Wall clock time and date at job start Tue Mar 31 2020 19:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47290 * 2 1 4 4 H 1.09002 * 109.49452 * 55.06320 * 3 2 1 5 5 C 1.53199 * 109.49774 * 295.00435 * 3 2 1 6 6 N 1.46931 * 108.77216 * 185.41186 * 5 3 2 7 7 C 1.34776 * 120.63006 * 233.62946 * 6 5 3 8 8 O 1.21596 * 119.99651 * 356.44020 * 7 6 5 9 9 C 1.47572 * 120.00276 * 176.44137 * 7 6 5 10 10 C 1.38049 * 119.72819 * 218.94428 * 9 7 6 11 11 N 1.34876 * 119.94942 * 179.97438 * 10 9 7 12 12 C 1.46499 * 120.31005 * 179.97438 * 11 10 9 13 13 C 1.34959 * 119.38198 * 359.97438 * 11 10 9 14 14 O 1.21866 * 120.26748 * 179.97438 * 13 11 10 15 15 C 1.41784 * 119.45992 * 0.02562 * 13 11 10 16 16 N 1.30601 * 120.03292 * 359.73748 * 15 13 11 17 17 C 1.46928 * 118.73956 * 53.60513 * 6 5 3 18 18 C 1.53184 * 108.77685 * 306.39180 * 17 6 5 19 19 C 1.53037 * 109.31549 * 54.63484 * 18 17 6 20 20 H 1.08995 * 109.46162 * 58.65339 * 19 18 17 21 21 N 1.46495 * 109.46464 * 178.61565 * 19 18 17 22 22 C 1.36941 * 120.00073 * 275.06806 * 21 19 18 23 23 H 1.08002 * 119.99686 * 359.97438 * 22 21 19 24 24 C 1.38811 * 120.00296 * 179.97438 * 22 21 19 25 25 N 1.31619 * 119.99775 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99929 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47174 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47295 * 120.00247 * 26 24 22 29 29 H 1.48505 * 109.47219 * 239.99850 * 26 24 22 30 30 H 1.08999 * 109.47508 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47290 * 59.99855 * 1 2 3 32 32 H 1.08996 * 109.47188 * 300.00022 * 1 2 3 33 33 H 1.08994 * 109.47298 * 120.00427 * 2 1 3 34 34 H 1.09005 * 109.46791 * 240.00440 * 2 1 3 35 35 H 1.09000 * 109.58257 * 305.19501 * 5 3 2 36 36 H 1.08992 * 109.58801 * 65.62890 * 5 3 2 37 37 H 1.08000 * 120.02889 * 0.02562 * 10 9 7 38 38 H 1.08998 * 109.46856 * 89.99803 * 12 11 10 39 39 H 1.09003 * 109.47078 * 210.00030 * 12 11 10 40 40 H 1.09003 * 109.46972 * 329.99879 * 12 11 10 41 41 H 1.08001 * 119.98051 * 180.02562 * 15 13 11 42 42 H 1.09000 * 109.58359 * 66.18249 * 17 6 5 43 43 H 1.09000 * 109.58386 * 186.45751 * 17 6 5 44 44 H 1.08995 * 109.49977 * 174.58624 * 18 17 6 45 45 H 1.09001 * 109.49844 * 294.64969 * 18 17 6 46 46 H 0.97002 * 120.00286 * 95.06360 * 21 19 18 47 47 H 0.97002 * 119.99599 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6065 1.9816 0.8424 5 6 1.6350 2.1280 -1.3088 6 7 2.2415 3.4657 -1.3493 7 6 1.4815 4.5581 -1.5627 8 8 0.2928 4.4370 -1.7883 9 6 2.0919 5.9010 -1.5226 10 6 1.4007 6.9504 -0.9509 11 7 1.9546 8.1795 -0.9114 12 6 1.2280 9.2989 -0.3071 13 6 3.1846 8.3686 -1.4338 14 8 3.7001 9.4726 -1.4072 15 6 3.8715 7.2728 -2.0147 16 7 3.3163 6.0909 -2.0370 17 6 3.6922 3.5899 -1.1521 18 6 4.0741 2.8880 0.1548 19 6 3.5656 1.4449 0.1217 20 1 3.9989 0.9268 -0.7338 21 7 3.9578 0.7607 1.3562 22 6 5.1962 0.1848 1.4561 23 1 5.8836 0.2347 0.6246 24 6 5.5680 -0.4631 2.6261 25 7 4.7301 -0.5244 3.6393 26 14 7.2576 -1.2480 2.7626 27 1 8.0036 -1.0405 1.4955 28 1 8.0044 -0.6236 3.8840 29 1 7.1082 -2.7034 3.0171 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 1.9907 1.5398 -2.1547 36 1 0.5497 2.2175 -1.3538 37 1 0.4176 6.7871 -0.5348 38 1 1.4686 9.3575 0.7544 39 1 1.5187 10.2279 -0.7974 40 1 0.1559 9.1440 -0.4286 41 1 4.8563 7.4146 -2.4348 42 1 4.2156 3.1209 -1.9853 43 1 3.9644 4.6439 -1.0964 44 1 5.1584 2.8891 0.2650 45 1 3.6224 3.4141 0.9958 46 1 3.3403 0.7156 2.1029 47 1 4.9898 -0.9774 4.4567 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037889881.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:29 Heat of formation + Delta-G solvation = -24.204280 kcal Electronic energy + Delta-G solvation = -29536.099226 eV Core-core repulsion = 25526.314578 eV Total energy + Delta-G solvation = -4009.784648 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.04043 -41.24239 -39.29713 -38.50198 -37.14827 -36.10892 -35.23522 -33.43636 -31.85119 -31.04585 -30.11665 -29.31352 -26.97744 -25.86198 -25.34503 -24.95564 -24.07542 -22.20932 -21.59649 -20.72594 -19.82913 -19.08090 -18.64850 -18.15746 -17.67513 -17.28885 -16.80189 -16.55680 -16.16738 -15.75465 -15.61609 -15.54785 -15.29512 -14.91835 -14.70637 -14.53895 -14.47093 -14.30688 -14.11411 -13.67762 -13.58902 -13.46208 -13.10358 -13.01008 -12.86104 -12.74075 -12.49024 -12.46073 -12.15838 -12.06371 -11.88835 -11.79360 -11.55513 -11.48325 -11.25890 -11.06784 -10.86233 -10.39995 -9.72829 -9.32541 -8.92815 -7.89622 -5.16418 -0.59183 0.10674 1.13367 1.49052 1.49991 1.59070 1.60406 1.95386 2.42746 2.59269 2.95482 3.10420 3.41944 3.44577 3.73799 3.82101 3.83398 4.01721 4.08006 4.14754 4.16773 4.31503 4.33804 4.38284 4.46019 4.52920 4.65937 4.67789 4.70398 4.81260 4.83986 4.88136 4.91151 5.03450 5.08530 5.10268 5.20857 5.33906 5.36394 5.40151 5.51341 5.54150 5.60746 5.69415 6.29026 6.32439 6.38098 6.51945 7.02700 7.39142 8.15446 8.38641 9.34002 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012835 B = 0.003178 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.013470 B = 8809.429833 C =10207.450914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.091 4.091 4 H 0.056 0.944 5 C 0.126 3.874 6 N -0.589 5.589 7 C 0.591 3.409 8 O -0.569 6.569 9 C -0.093 4.093 10 C 0.188 3.812 11 N -0.475 5.475 12 C 0.045 3.955 13 C 0.470 3.530 14 O -0.554 6.554 15 C 0.033 3.967 16 N -0.375 5.375 17 C 0.115 3.885 18 C -0.141 4.141 19 C 0.178 3.822 20 H 0.046 0.954 21 N -0.730 5.730 22 C -0.227 4.227 23 H 0.076 0.924 24 C -0.075 4.075 25 N -0.970 5.970 26 Si 0.965 3.035 27 H -0.265 1.265 28 H -0.298 1.298 29 H -0.297 1.297 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.212 0.788 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.128 0.872 41 H 0.213 0.787 42 H 0.079 0.921 43 H 0.111 0.889 44 H 0.061 0.939 45 H 0.043 0.957 46 H 0.371 0.629 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.903 16.812 -11.718 22.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.111 4.111 4 H 0.075 0.925 5 C 0.003 3.997 6 N -0.319 5.319 7 C 0.378 3.622 8 O -0.449 6.449 9 C -0.217 4.217 10 C 0.052 3.948 11 N -0.184 5.184 12 C -0.094 4.094 13 C 0.268 3.732 14 O -0.432 6.432 15 C -0.155 4.155 16 N -0.091 5.091 17 C -0.008 4.008 18 C -0.183 4.183 19 C 0.070 3.930 20 H 0.064 0.936 21 N -0.369 5.369 22 C -0.360 4.360 23 H 0.094 0.906 24 C -0.267 4.267 25 N -0.621 5.621 26 Si 0.795 3.205 27 H -0.190 1.190 28 H -0.226 1.226 29 H -0.225 1.225 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.229 0.771 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.146 0.854 41 H 0.229 0.771 42 H 0.097 0.903 43 H 0.129 0.871 44 H 0.080 0.920 45 H 0.062 0.938 46 H 0.203 0.797 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -9.789 16.694 -12.148 22.849 hybrid contribution 0.616 -0.062 1.326 1.463 sum -9.173 16.632 -10.822 21.860 Atomic orbital electron populations 1.21779 0.94639 1.01922 1.01909 1.21355 0.96243 0.95057 1.01893 1.21624 0.95512 0.96599 0.97403 0.92502 1.21740 0.99638 0.81288 0.97003 1.48001 1.09058 1.06322 1.68515 1.17479 0.85175 0.83286 0.76218 1.90776 1.15813 1.86620 1.51674 1.20178 0.94250 0.94851 1.12372 1.23386 0.99215 0.82064 0.90147 1.45704 1.16624 1.10496 1.45584 1.22718 0.98742 0.87712 1.00208 1.18957 0.81620 0.91667 0.80961 1.90942 1.66131 1.26591 1.59552 1.25080 1.02940 0.85613 1.01868 1.67791 1.07692 1.24161 1.09501 1.22135 0.78556 1.03204 0.96860 1.22500 1.01037 0.97854 0.96859 1.20428 0.92664 0.91027 0.88904 0.93606 1.42580 1.15456 1.64896 1.13956 1.19619 0.92608 1.25482 0.98241 0.90623 1.25438 1.01436 1.03284 0.96587 1.69819 1.36951 1.50187 1.05146 0.85190 0.80430 0.77391 0.77497 1.18977 1.22558 1.22491 0.92277 0.91475 0.93359 0.93535 0.91823 0.90087 0.88578 0.77134 0.88419 0.88722 0.85403 0.77081 0.90281 0.87128 0.91987 0.93830 0.79708 0.94331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.67 71.98 0.70 -2.96 16 2 C -0.11 -3.33 5.31 30.59 0.16 -3.17 16 3 C -0.09 -2.85 1.93 -10.72 -0.02 -2.87 16 4 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 5 C 0.13 3.32 5.31 86.36 0.46 3.78 16 6 N -0.59 -15.55 2.97 -822.60 -2.44 -18.00 16 7 C 0.59 15.29 7.45 86.71 0.65 15.94 16 8 O -0.57 -16.81 16.29 -4.02 -0.07 -16.87 16 9 C -0.09 -1.95 6.01 41.21 0.25 -1.70 16 10 C 0.19 2.74 9.91 84.18 0.83 3.57 16 11 N -0.48 -6.76 2.97 -671.21 -2.00 -8.75 16 12 C 0.05 0.32 10.43 127.77 1.33 1.65 16 13 C 0.47 9.24 7.45 85.09 0.63 9.87 16 14 O -0.55 -14.01 16.74 -4.88 -0.08 -14.09 16 15 C 0.03 0.61 11.23 85.75 0.96 1.57 16 16 N -0.38 -7.78 7.27 -183.48 -1.33 -9.12 16 17 C 0.12 3.01 6.01 86.36 0.52 3.53 16 18 C -0.14 -4.68 5.66 30.67 0.17 -4.51 16 19 C 0.18 6.58 2.19 45.02 0.10 6.68 16 20 H 0.05 1.73 8.08 -2.39 -0.02 1.71 16 21 N -0.73 -34.97 4.33 -322.83 -1.40 -36.37 16 22 C -0.23 -12.12 9.93 84.03 0.83 -11.29 16 23 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 24 C -0.08 -4.23 5.50 84.86 0.47 -3.77 16 25 N -0.97 -58.42 13.06 21.65 0.28 -58.14 16 26 Si 0.96 45.54 29.55 68.60 2.03 47.57 16 27 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 28 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 29 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 1.47 6.70 -2.38 -0.02 1.46 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.05 1.80 7.22 -2.39 -0.02 1.79 16 34 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 35 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.10 2.52 5.74 -2.39 -0.01 2.50 16 37 H 0.21 1.81 8.01 -2.91 -0.02 1.79 16 38 H 0.10 0.52 8.14 -2.39 -0.02 0.51 16 39 H 0.09 0.85 7.46 -2.39 -0.02 0.84 16 40 H 0.13 0.06 8.04 -2.39 -0.02 0.04 16 41 H 0.21 2.82 8.06 -2.91 -0.02 2.80 16 42 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.11 2.71 4.50 -2.39 -0.01 2.70 16 44 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.37 19.50 7.51 -92.71 -0.70 18.81 16 47 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -72.23 379.22 3.33 -68.90 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: 0.30 Total: 28.56 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: 8.05 Total: 16.31 kcal Atomic # 7 Polarization: -123.48 SS G_CDS: -6.89 Total: -130.38 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.15 Total: -30.97 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -72.23 3.33 -68.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037889881.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.696 kcal (2) G-P(sol) polarization free energy of solvation -72.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds