Wall clock time and date at job start Tue Mar 31 2020 19:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47019 * 2 1 4 4 H 1.08995 * 109.49990 * 54.93853 * 3 2 1 5 5 C 1.53196 * 109.49691 * 294.83741 * 3 2 1 6 6 N 1.46928 * 108.76994 * 185.41516 * 5 3 2 7 7 C 1.34783 * 120.62814 * 233.88114 * 6 5 3 8 8 O 1.21517 * 119.99915 * 359.18088 * 7 6 5 9 9 C 1.48126 * 120.00075 * 179.18389 * 7 6 5 10 10 C 1.39280 * 120.06054 * 202.54715 * 9 7 6 11 11 N 1.32163 * 120.02014 * 179.75125 * 10 9 7 12 12 C 1.31973 * 120.14056 * 0.52640 * 11 10 9 13 13 C 1.39440 * 120.12100 * 359.72708 * 12 11 10 14 14 O 1.35674 * 120.01308 * 180.02562 * 13 12 11 15 15 C 1.42904 * 116.99933 * 179.97438 * 14 13 12 16 16 N 1.32193 * 119.98205 * 0.02562 * 13 12 11 17 17 C 1.46926 * 118.73989 * 53.61081 * 6 5 3 18 18 C 1.53187 * 108.77477 * 306.38730 * 17 6 5 19 19 C 1.53034 * 109.31389 * 54.63921 * 18 17 6 20 20 H 1.08998 * 109.46171 * 178.62838 * 19 18 17 21 21 N 1.46501 * 109.46333 * 58.64827 * 19 18 17 22 22 C 1.36941 * 119.99482 * 84.99969 * 21 19 18 23 23 H 1.07998 * 120.00396 * 0.02562 * 22 21 19 24 24 C 1.38815 * 119.99775 * 180.02562 * 22 21 19 25 25 N 1.31618 * 119.99951 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99881 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47241 * 90.00282 * 26 24 22 28 28 H 1.48501 * 109.46997 * 210.00222 * 26 24 22 29 29 H 1.48500 * 109.47012 * 330.00466 * 26 24 22 30 30 H 1.08995 * 109.47477 * 300.00076 * 1 2 3 31 31 H 1.09001 * 109.47230 * 59.99888 * 1 2 3 32 32 H 1.08993 * 109.47241 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47226 * 240.00197 * 2 1 3 34 34 H 1.09001 * 109.47230 * 120.00112 * 2 1 3 35 35 H 1.08994 * 109.58404 * 65.62946 * 5 3 2 36 36 H 1.08999 * 109.58919 * 305.19794 * 5 3 2 37 37 H 1.08005 * 119.99038 * 0.02562 * 10 9 7 38 38 H 1.08012 * 119.93991 * 179.70760 * 12 11 10 39 39 H 1.09003 * 109.46721 * 180.02562 * 15 14 13 40 40 H 1.08998 * 109.47099 * 299.99616 * 15 14 13 41 41 H 1.08996 * 109.46807 * 60.00198 * 15 14 13 42 42 H 1.09000 * 109.58669 * 66.17888 * 17 6 5 43 43 H 1.09002 * 109.58600 * 186.59741 * 17 6 5 44 44 H 1.09004 * 109.49259 * 174.58630 * 18 17 6 45 45 H 1.08997 * 109.49664 * 294.65248 * 18 17 6 46 46 H 0.96996 * 120.00521 * 265.00248 * 21 19 18 47 47 H 0.96997 * 119.99585 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6048 1.9823 0.8410 5 6 1.6385 2.1268 -1.3105 6 7 2.2451 3.4644 -1.3506 7 6 1.4849 4.5571 -1.5622 8 8 0.2880 4.4400 -1.7368 9 6 2.1084 5.9006 -1.5819 10 6 1.3362 7.0319 -1.3293 11 7 1.8943 8.2298 -1.3422 12 6 3.1813 8.3585 -1.6045 13 6 3.9588 7.2303 -1.8635 14 8 5.2818 7.3651 -2.1324 15 6 6.0172 6.1668 -2.3878 16 7 3.4066 6.0294 -1.8470 17 6 3.6952 3.5887 -1.1498 18 6 4.0736 2.8881 0.1589 19 6 3.5652 1.4450 0.1257 20 1 3.8544 0.9369 1.0457 21 7 4.1506 0.7475 -1.0219 22 6 5.3879 0.1706 -0.9141 23 1 5.9319 0.2295 0.0170 24 6 5.9429 -0.4899 -2.0016 25 7 5.2801 -0.5612 -3.1365 26 14 7.6303 -1.2775 -1.8543 27 1 7.4829 -2.6813 -1.3930 28 1 8.3022 -1.2596 -3.1786 29 1 8.4474 -0.5176 -0.8744 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 0.5533 2.2161 -1.3585 36 1 1.9965 1.5378 -2.1549 37 1 0.2819 6.9297 -1.1183 38 1 3.6330 9.3394 -1.6189 39 1 7.0595 6.4158 -2.5873 40 1 5.9604 5.5131 -1.5174 41 1 5.5929 5.6575 -3.2530 42 1 4.2209 3.1189 -1.9811 43 1 3.9670 4.6427 -1.0919 44 1 5.1578 2.8894 0.2719 45 1 3.6197 3.4151 0.9981 46 1 3.6619 0.6943 -1.8580 47 1 5.6680 -1.0224 -3.8965 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037934194.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:29 Heat of formation + Delta-G solvation = 5.526840 kcal Electronic energy + Delta-G solvation = -30396.084361 eV Core-core repulsion = 26387.588950 eV Total energy + Delta-G solvation = -4008.495410 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.77019 -39.91269 -38.64536 -37.75782 -35.05114 -33.97017 -33.72983 -31.72860 -31.40530 -29.44836 -28.60488 -27.84146 -26.11284 -24.47023 -24.05354 -23.61006 -23.45637 -20.91962 -20.56661 -18.72240 -18.60487 -17.68300 -17.40960 -17.10801 -16.68773 -16.31696 -15.94809 -15.23103 -14.73975 -14.71660 -14.51962 -14.08953 -14.01309 -13.79598 -13.39006 -13.30011 -13.13357 -13.01198 -12.66837 -12.57710 -12.12008 -12.00319 -11.84995 -11.55471 -11.43904 -11.23277 -11.10016 -10.91587 -10.82710 -10.52347 -10.38967 -10.30803 -10.25955 -10.20400 -9.81705 -9.58850 -9.15898 -9.03817 -8.83680 -8.28516 -7.00159 -5.82207 -3.10484 0.19944 0.78791 2.57634 2.70961 2.96425 3.38125 3.43979 3.45490 3.45958 3.74783 3.97421 4.17304 4.54040 4.60657 4.87891 5.07142 5.12949 5.16465 5.21155 5.24935 5.33698 5.53395 5.54762 5.57823 5.66165 5.70513 5.76239 5.79121 5.84692 5.91195 6.06615 6.14322 6.27256 6.35567 6.37832 6.41747 6.52694 6.58682 6.69959 6.72234 6.76314 6.83167 6.92769 6.98372 7.34011 7.59066 7.65268 8.14907 8.36185 9.47914 10.04702 10.39981 11.40152 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010670 B = 0.004442 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.582852 B = 6302.363751 C = 8365.518935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.066 0.934 5 C 0.116 3.884 6 N -0.573 5.573 7 C 0.567 3.433 8 O -0.539 6.539 9 C 0.085 3.915 10 C 0.060 3.940 11 N -0.405 5.405 12 C 0.061 3.939 13 C 0.270 3.730 14 O -0.298 6.298 15 C 0.030 3.970 16 N -0.458 5.458 17 C 0.085 3.915 18 C -0.152 4.152 19 C 0.178 3.822 20 H 0.050 0.950 21 N -0.717 5.717 22 C -0.237 4.237 23 H 0.069 0.931 24 C -0.011 4.011 25 N -0.932 5.932 26 Si 0.903 3.097 27 H -0.291 1.291 28 H -0.293 1.293 29 H -0.283 1.283 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.184 0.816 38 H 0.181 0.819 39 H 0.104 0.896 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.084 0.916 43 H 0.118 0.882 44 H 0.072 0.928 45 H 0.044 0.956 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.458 14.210 4.599 15.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.085 0.915 5 C -0.006 4.006 6 N -0.302 5.302 7 C 0.351 3.649 8 O -0.417 6.417 9 C -0.055 4.055 10 C -0.097 4.097 11 N -0.119 5.119 12 C -0.104 4.104 13 C 0.086 3.914 14 O -0.202 6.202 15 C -0.065 4.065 16 N -0.191 5.191 17 C -0.036 4.036 18 C -0.193 4.193 19 C 0.067 3.933 20 H 0.068 0.932 21 N -0.360 5.360 22 C -0.368 4.368 23 H 0.087 0.913 24 C -0.207 4.207 25 N -0.580 5.580 26 Si 0.734 3.266 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.209 1.209 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.201 0.799 38 H 0.198 0.802 39 H 0.122 0.878 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.102 0.898 43 H 0.134 0.866 44 H 0.091 0.909 45 H 0.062 0.938 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.746 14.250 4.519 15.685 hybrid contribution 1.191 -0.907 -0.296 1.526 sum -3.554 13.344 4.224 14.440 Atomic orbital electron populations 1.21855 0.96763 1.01091 1.01370 1.21416 0.94305 0.95614 1.03437 1.21753 0.97503 0.96215 0.96793 0.91550 1.21824 0.98879 0.81214 0.98703 1.48046 1.09443 1.05919 1.66816 1.17645 0.85951 0.82867 0.78407 1.90781 1.13862 1.85618 1.51398 1.22064 0.88841 0.96586 0.97971 1.23565 1.02051 0.86688 0.97444 1.68602 1.09744 1.25037 1.08516 1.23177 0.89439 0.98759 0.99028 1.21202 0.86601 0.90703 0.92912 1.86275 1.15369 1.35166 1.83411 1.23145 0.95395 0.85372 1.02581 1.68334 1.11870 1.23304 1.15632 1.22746 0.78051 1.03746 0.99095 1.22568 1.01630 0.99206 0.95880 1.20232 0.89672 0.90755 0.92612 0.93207 1.42457 1.19139 1.63882 1.10514 1.19206 0.93660 1.26932 0.96992 0.91327 1.24685 0.98498 1.01472 0.96004 1.69647 1.38142 1.48026 1.02192 0.86262 0.84277 0.79429 0.76612 1.21824 1.21911 1.20891 0.93352 0.92758 0.93125 0.90444 0.91973 0.89342 0.90273 0.79910 0.80186 0.87813 0.91414 0.91489 0.89806 0.86552 0.90923 0.93771 0.78121 0.93543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.67 37.16 0.36 -1.67 16 2 C -0.11 -1.71 5.19 -26.73 -0.14 -1.85 16 3 C -0.10 -1.64 2.14 -90.49 -0.19 -1.84 16 4 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 5 C 0.12 1.92 5.03 -3.71 -0.02 1.90 16 6 N -0.57 -9.41 2.97 -173.77 -0.52 -9.93 16 7 C 0.57 9.18 7.62 -12.20 -0.09 9.08 16 8 O -0.54 -9.63 15.97 5.35 0.09 -9.55 16 9 C 0.08 1.19 6.43 -82.86 -0.53 0.66 16 10 C 0.06 0.74 10.75 -17.02 -0.18 0.56 16 11 N -0.41 -4.68 10.48 -12.58 -0.13 -4.81 16 12 C 0.06 0.62 11.18 -17.04 -0.19 0.43 16 13 C 0.27 3.17 7.50 -16.95 -0.13 3.04 16 14 O -0.30 -3.24 10.49 -18.72 -0.20 -3.44 16 15 C 0.03 0.30 10.37 101.05 1.05 1.35 16 16 N -0.46 -6.19 5.49 -9.69 -0.05 -6.24 16 17 C 0.09 1.40 5.75 -3.71 -0.02 1.38 16 18 C -0.15 -2.52 5.78 -26.62 -0.15 -2.67 16 19 C 0.18 3.25 2.53 -67.89 -0.17 3.08 16 20 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 21 N -0.72 -16.10 3.72 -53.38 -0.20 -16.30 16 22 C -0.24 -6.04 9.93 -15.06 -0.15 -6.19 16 23 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 24 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 25 N -0.93 -26.59 13.06 55.49 0.72 -25.86 16 26 Si 0.90 21.39 29.55 -169.99 -5.02 16.37 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.72 6.70 -51.93 -0.35 0.37 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 1.41 7.70 -51.93 -0.40 1.01 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.09 1.44 5.73 -51.93 -0.30 1.15 16 36 H 0.08 1.47 6.64 -51.93 -0.34 1.12 16 37 H 0.18 2.00 7.81 -52.48 -0.41 1.59 16 38 H 0.18 1.25 8.06 -52.48 -0.42 0.83 16 39 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.73 7.44 -51.93 -0.39 0.35 16 41 H 0.07 0.74 8.11 -51.93 -0.42 0.32 16 42 H 0.08 1.62 7.74 -51.93 -0.40 1.21 16 43 H 0.12 1.76 3.29 -76.47 -0.25 1.51 16 44 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.38 9.28 5.94 -40.82 -0.24 9.04 16 47 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 374.78 15.07 5.65 5.65 Total: -1.00 -29.31 374.78 -7.18 -36.49 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -6.85 Total: 10.74 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: -0.66 Total: 6.89 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: -0.18 Total: -63.15 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.11 Total: -12.98 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.31 -7.18 -36.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037934194.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.012 kcal (2) G-P(sol) polarization free energy of solvation -29.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds