Wall clock time and date at job start Tue Mar 31 2020 19:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47019 * 2 1 4 4 H 1.08995 * 109.49990 * 54.93853 * 3 2 1 5 5 C 1.53196 * 109.49691 * 294.83741 * 3 2 1 6 6 N 1.46928 * 108.76994 * 185.41516 * 5 3 2 7 7 C 1.34783 * 120.62814 * 233.88114 * 6 5 3 8 8 O 1.21517 * 119.99915 * 359.18088 * 7 6 5 9 9 C 1.48126 * 120.00075 * 179.18389 * 7 6 5 10 10 C 1.39280 * 120.06054 * 202.54715 * 9 7 6 11 11 N 1.32163 * 120.02014 * 179.75125 * 10 9 7 12 12 C 1.31973 * 120.14056 * 0.52640 * 11 10 9 13 13 C 1.39440 * 120.12100 * 359.72708 * 12 11 10 14 14 O 1.35674 * 120.01308 * 180.02562 * 13 12 11 15 15 C 1.42904 * 116.99933 * 179.97438 * 14 13 12 16 16 N 1.32193 * 119.98205 * 0.02562 * 13 12 11 17 17 C 1.46926 * 118.73989 * 53.61081 * 6 5 3 18 18 C 1.53187 * 108.77477 * 306.38730 * 17 6 5 19 19 C 1.53034 * 109.31389 * 54.63921 * 18 17 6 20 20 H 1.08998 * 109.46171 * 178.62838 * 19 18 17 21 21 N 1.46501 * 109.46333 * 58.64827 * 19 18 17 22 22 C 1.36941 * 119.99482 * 84.99969 * 21 19 18 23 23 H 1.07998 * 120.00396 * 0.02562 * 22 21 19 24 24 C 1.38815 * 119.99775 * 180.02562 * 22 21 19 25 25 N 1.31618 * 119.99951 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99881 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47241 * 90.00282 * 26 24 22 28 28 H 1.48501 * 109.46997 * 210.00222 * 26 24 22 29 29 H 1.48500 * 109.47012 * 330.00466 * 26 24 22 30 30 H 1.08995 * 109.47477 * 300.00076 * 1 2 3 31 31 H 1.09001 * 109.47230 * 59.99888 * 1 2 3 32 32 H 1.08993 * 109.47241 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47226 * 240.00197 * 2 1 3 34 34 H 1.09001 * 109.47230 * 120.00112 * 2 1 3 35 35 H 1.08994 * 109.58404 * 65.62946 * 5 3 2 36 36 H 1.08999 * 109.58919 * 305.19794 * 5 3 2 37 37 H 1.08005 * 119.99038 * 0.02562 * 10 9 7 38 38 H 1.08012 * 119.93991 * 179.70760 * 12 11 10 39 39 H 1.09003 * 109.46721 * 180.02562 * 15 14 13 40 40 H 1.08998 * 109.47099 * 299.99616 * 15 14 13 41 41 H 1.08996 * 109.46807 * 60.00198 * 15 14 13 42 42 H 1.09000 * 109.58669 * 66.17888 * 17 6 5 43 43 H 1.09002 * 109.58600 * 186.59741 * 17 6 5 44 44 H 1.09004 * 109.49259 * 174.58630 * 18 17 6 45 45 H 1.08997 * 109.49664 * 294.65248 * 18 17 6 46 46 H 0.96996 * 120.00521 * 265.00248 * 21 19 18 47 47 H 0.96997 * 119.99585 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6048 1.9823 0.8410 5 6 1.6385 2.1268 -1.3105 6 7 2.2451 3.4644 -1.3506 7 6 1.4849 4.5571 -1.5622 8 8 0.2880 4.4400 -1.7368 9 6 2.1084 5.9006 -1.5819 10 6 1.3362 7.0319 -1.3293 11 7 1.8943 8.2298 -1.3422 12 6 3.1813 8.3585 -1.6045 13 6 3.9588 7.2303 -1.8635 14 8 5.2818 7.3651 -2.1324 15 6 6.0172 6.1668 -2.3878 16 7 3.4066 6.0294 -1.8470 17 6 3.6952 3.5887 -1.1498 18 6 4.0736 2.8881 0.1589 19 6 3.5652 1.4450 0.1257 20 1 3.8544 0.9369 1.0457 21 7 4.1506 0.7475 -1.0219 22 6 5.3879 0.1706 -0.9141 23 1 5.9319 0.2295 0.0170 24 6 5.9429 -0.4899 -2.0016 25 7 5.2801 -0.5612 -3.1365 26 14 7.6303 -1.2775 -1.8543 27 1 7.4829 -2.6813 -1.3930 28 1 8.3022 -1.2596 -3.1786 29 1 8.4474 -0.5176 -0.8744 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 0.5533 2.2161 -1.3585 36 1 1.9965 1.5378 -2.1549 37 1 0.2819 6.9297 -1.1183 38 1 3.6330 9.3394 -1.6189 39 1 7.0595 6.4158 -2.5873 40 1 5.9604 5.5131 -1.5174 41 1 5.5929 5.6575 -3.2530 42 1 4.2209 3.1189 -1.9811 43 1 3.9670 4.6427 -1.0919 44 1 5.1578 2.8894 0.2719 45 1 3.6197 3.4151 0.9981 46 1 3.6619 0.6943 -1.8580 47 1 5.6680 -1.0224 -3.8965 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037934194.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:28 Heat of formation + Delta-G solvation = -13.600490 kcal Electronic energy + Delta-G solvation = -30396.913784 eV Core-core repulsion = 26387.588950 eV Total energy + Delta-G solvation = -4009.324833 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.76577 -41.17859 -39.64650 -39.03966 -36.26851 -35.52762 -34.96770 -33.43055 -32.36085 -31.04477 -30.00162 -28.75946 -27.29397 -25.82567 -25.32128 -25.08970 -24.68673 -22.25454 -21.75984 -20.09919 -19.60702 -19.25145 -18.82701 -18.05572 -17.72658 -17.39150 -17.20366 -16.67334 -16.26606 -15.99007 -15.63914 -15.57877 -15.26476 -15.05634 -14.80750 -14.60455 -14.37656 -14.15512 -14.06861 -13.84026 -13.44710 -13.01087 -12.92652 -12.85005 -12.75646 -12.66410 -12.63230 -12.37395 -12.26256 -12.11519 -11.85273 -11.69139 -11.62847 -11.52311 -11.45648 -11.14811 -10.86913 -10.13540 -9.95894 -9.64430 -8.91312 -7.88095 -5.14262 -0.77533 -0.15297 1.45849 1.48920 1.50170 1.57456 1.73725 1.79849 2.46327 2.59763 2.68817 3.04231 3.27152 3.45690 3.50272 3.80437 3.85086 3.95459 4.04066 4.08787 4.30396 4.34214 4.36714 4.37244 4.42750 4.43838 4.46030 4.60970 4.67339 4.73506 4.84265 4.91575 4.97521 5.03704 5.05598 5.14385 5.22013 5.24145 5.30099 5.41085 5.50060 5.59075 5.63524 5.80347 5.89423 6.25176 6.33228 6.45228 6.86988 7.41030 8.16740 8.40967 9.35148 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010670 B = 0.004442 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.582852 B = 6302.363751 C = 8365.518935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.091 4.091 4 H 0.086 0.914 5 C 0.122 3.878 6 N -0.578 5.578 7 C 0.568 3.432 8 O -0.559 6.559 9 C 0.062 3.938 10 C 0.070 3.930 11 N -0.410 5.410 12 C 0.085 3.915 13 C 0.263 3.737 14 O -0.293 6.293 15 C 0.029 3.971 16 N -0.476 5.476 17 C 0.098 3.902 18 C -0.143 4.143 19 C 0.172 3.828 20 H 0.047 0.953 21 N -0.722 5.722 22 C -0.226 4.226 23 H 0.074 0.926 24 C -0.070 4.070 25 N -0.968 5.968 26 Si 0.962 3.038 27 H -0.294 1.294 28 H -0.301 1.301 29 H -0.270 1.270 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.044 0.956 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.052 0.948 37 H 0.194 0.806 38 H 0.220 0.780 39 H 0.131 0.869 40 H 0.058 0.942 41 H 0.052 0.948 42 H 0.048 0.952 43 H 0.136 0.864 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.373 0.627 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.341 16.462 6.227 18.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.111 4.111 4 H 0.104 0.896 5 C -0.001 4.001 6 N -0.307 5.307 7 C 0.354 3.646 8 O -0.438 6.438 9 C -0.075 4.075 10 C -0.087 4.087 11 N -0.124 5.124 12 C -0.080 4.080 13 C 0.078 3.922 14 O -0.197 6.197 15 C -0.065 4.065 16 N -0.210 5.210 17 C -0.024 4.024 18 C -0.184 4.184 19 C 0.063 3.937 20 H 0.065 0.935 21 N -0.363 5.363 22 C -0.358 4.358 23 H 0.092 0.908 24 C -0.262 4.262 25 N -0.620 5.620 26 Si 0.792 3.208 27 H -0.222 1.222 28 H -0.229 1.229 29 H -0.195 1.195 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.112 0.888 36 H 0.070 0.930 37 H 0.211 0.789 38 H 0.236 0.764 39 H 0.149 0.851 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.152 0.848 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.206 0.794 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.649 16.516 6.202 18.245 hybrid contribution 1.157 -1.473 -0.779 2.029 sum -3.491 15.044 5.423 16.368 Atomic orbital electron populations 1.21788 0.94553 1.02001 1.02005 1.21336 0.96218 0.94919 1.01813 1.21665 0.95767 0.96661 0.97027 0.89564 1.21677 0.98997 0.81363 0.98030 1.48064 1.09407 1.06002 1.67222 1.17949 0.85720 0.83550 0.77385 1.90757 1.14730 1.86159 1.52174 1.21715 0.89352 0.95724 1.00743 1.23701 1.02366 0.86386 0.96240 1.68733 1.10344 1.24278 1.09056 1.23822 0.88701 0.99744 0.95769 1.21463 0.87064 0.90588 0.93076 1.86293 1.14923 1.35209 1.83263 1.23220 0.96661 0.85162 1.01500 1.68063 1.11933 1.24816 1.16154 1.22606 0.77815 1.04504 0.97518 1.22444 1.01206 0.97974 0.96796 1.20446 0.91177 0.91262 0.90805 0.93473 1.42554 1.18372 1.64119 1.11295 1.19548 0.94360 1.25176 0.96684 0.90797 1.25347 1.01709 1.03158 0.96025 1.69805 1.39612 1.49756 1.02797 0.85310 0.80908 0.78382 0.76172 1.22151 1.22860 1.19457 0.91686 0.93050 0.92166 0.93694 0.91884 0.88835 0.93013 0.78911 0.76386 0.85081 0.92324 0.92943 0.93359 0.84776 0.91690 0.91470 0.79362 0.94429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.67 71.98 0.70 -3.00 16 2 C -0.10 -3.27 5.19 30.59 0.16 -3.11 16 3 C -0.09 -2.89 2.14 -10.71 -0.02 -2.91 16 4 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 5 C 0.12 4.12 5.03 86.36 0.43 4.55 16 6 N -0.58 -19.11 2.97 -821.99 -2.44 -21.55 16 7 C 0.57 18.23 7.62 86.87 0.66 18.89 16 8 O -0.56 -19.81 15.97 -3.77 -0.06 -19.87 16 9 C 0.06 1.69 6.43 41.83 0.27 1.96 16 10 C 0.07 1.59 10.75 84.89 0.91 2.50 16 11 N -0.41 -8.31 10.48 -193.73 -2.03 -10.34 16 12 C 0.09 1.46 11.18 84.96 0.95 2.41 16 13 C 0.26 5.61 7.50 84.93 0.64 6.25 16 14 O -0.29 -5.72 10.49 -89.91 -0.94 -6.66 16 15 C 0.03 0.56 10.37 113.37 1.18 1.74 16 16 N -0.48 -12.38 5.49 -297.47 -1.63 -14.01 16 17 C 0.10 3.22 5.75 86.36 0.50 3.72 16 18 C -0.14 -4.66 5.78 30.67 0.18 -4.49 16 19 C 0.17 6.28 2.53 45.02 0.11 6.39 16 20 H 0.05 1.76 8.08 -2.39 -0.02 1.74 16 21 N -0.72 -33.30 3.72 -322.81 -1.20 -34.50 16 22 C -0.23 -11.65 9.93 84.03 0.83 -10.82 16 23 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 24 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 25 N -0.97 -57.23 13.06 21.65 0.28 -56.95 16 26 Si 0.96 44.65 29.55 68.60 2.03 46.68 16 27 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 28 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 29 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.05 1.33 6.70 -2.39 -0.02 1.31 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.04 1.69 7.70 -2.39 -0.02 1.68 16 34 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.09 3.07 5.73 -2.39 -0.01 3.06 16 36 H 0.05 2.04 6.64 -2.39 -0.02 2.02 16 37 H 0.19 3.89 7.81 -2.91 -0.02 3.86 16 38 H 0.22 1.98 8.06 -2.90 -0.02 1.96 16 39 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.06 1.23 7.44 -2.39 -0.02 1.21 16 41 H 0.05 1.16 8.11 -2.39 -0.02 1.14 16 42 H 0.05 1.94 7.74 -2.39 -0.02 1.92 16 43 H 0.14 4.01 3.29 -50.83 -0.17 3.84 16 44 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 45 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.37 18.92 5.94 -92.71 -0.55 18.37 16 47 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -64.05 374.78 2.25 -61.80 By element: Atomic # 1 Polarization: 34.42 SS G_CDS: 0.29 Total: 34.71 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 7.96 Total: 20.70 kcal Atomic # 7 Polarization: -130.33 SS G_CDS: -7.02 Total: -137.35 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -1.00 Total: -26.53 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -64.05 2.25 -61.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037934194.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.202 kcal (2) G-P(sol) polarization free energy of solvation -64.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds