Wall clock time and date at job start Tue Mar 31 2020 19:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47533 * 2 1 4 4 H 1.09005 * 109.49612 * 304.93952 * 3 2 1 5 5 C 1.53192 * 109.49662 * 64.99813 * 3 2 1 6 6 N 1.46928 * 108.77658 * 174.59254 * 5 3 2 7 7 C 1.34775 * 120.63445 * 126.41167 * 6 5 3 8 8 O 1.21510 * 119.99998 * 352.35136 * 7 6 5 9 9 C 1.48134 * 119.99880 * 172.35202 * 7 6 5 10 10 C 1.39288 * 120.05654 * 170.69125 * 9 7 6 11 11 N 1.32160 * 120.01672 * 179.68918 * 10 9 7 12 12 C 1.31976 * 120.14574 * 0.60097 * 11 10 9 13 13 C 1.39450 * 120.11482 * 359.67107 * 12 11 10 14 14 O 1.35672 * 120.01200 * 179.97438 * 13 12 11 15 15 C 1.42902 * 117.00254 * 180.02562 * 14 13 12 16 16 N 1.32192 * 119.97983 * 0.02562 * 13 12 11 17 17 C 1.46931 * 118.73716 * 306.39131 * 6 5 3 18 18 C 1.53198 * 108.77506 * 53.60474 * 17 6 5 19 19 C 1.53035 * 109.31292 * 305.36820 * 18 17 6 20 20 H 1.09004 * 109.45547 * 181.37958 * 19 18 17 21 21 N 1.46496 * 109.45994 * 301.34106 * 19 18 17 22 22 C 1.36933 * 120.00228 * 275.06706 * 21 19 18 23 23 H 1.08008 * 119.99740 * 0.02562 * 22 21 19 24 24 C 1.38808 * 120.00312 * 180.02562 * 22 21 19 25 25 N 1.31618 * 119.99984 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00156 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47729 * 90.00066 * 26 24 22 28 28 H 1.48509 * 109.46942 * 209.99997 * 26 24 22 29 29 H 1.48500 * 109.47250 * 329.99585 * 26 24 22 30 30 H 1.08999 * 109.47011 * 300.00237 * 1 2 3 31 31 H 1.08994 * 109.47009 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46798 * 60.00206 * 1 2 3 33 33 H 1.09004 * 109.46994 * 119.99724 * 2 1 3 34 34 H 1.08999 * 109.47011 * 239.99762 * 2 1 3 35 35 H 1.08999 * 109.58857 * 294.37587 * 5 3 2 36 36 H 1.08993 * 109.58930 * 54.65903 * 5 3 2 37 37 H 1.07999 * 119.99049 * 359.97438 * 10 9 7 38 38 H 1.07996 * 119.94452 * 179.69417 * 12 11 10 39 39 H 1.09003 * 109.46879 * 59.99548 * 15 14 13 40 40 H 1.08991 * 109.47352 * 179.97438 * 15 14 13 41 41 H 1.09001 * 109.46542 * 300.00192 * 15 14 13 42 42 H 1.08996 * 109.58862 * 173.39805 * 17 6 5 43 43 H 1.08996 * 109.58531 * 293.82546 * 17 6 5 44 44 H 1.09006 * 109.49171 * 65.31932 * 18 17 6 45 45 H 1.08992 * 109.49799 * 185.37875 * 18 17 6 46 46 H 0.96997 * 119.99688 * 95.07246 * 21 19 18 47 47 H 0.97002 * 120.00387 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6065 1.9816 -0.8423 5 6 1.6351 2.1279 1.3088 6 7 2.2415 3.4656 1.3493 7 6 1.4817 4.5579 1.5636 8 8 0.2707 4.4606 1.5870 9 6 2.1228 5.8772 1.7707 10 6 1.3466 7.0334 1.7986 11 7 1.9187 8.2093 1.9895 12 6 3.2270 8.2929 2.1423 13 6 4.0103 7.1397 2.1096 14 8 5.3550 7.2281 2.2663 15 6 6.0952 6.0066 2.2214 16 7 3.4424 5.9604 1.9250 17 6 3.6923 3.5899 1.1522 18 6 4.0742 2.8879 -0.1548 19 6 3.5656 1.4449 -0.1216 20 1 3.8574 0.9359 -1.0403 21 7 4.1481 0.7485 1.0281 22 6 5.3861 0.1726 0.9246 23 1 5.9334 0.2322 -0.0047 24 6 5.9377 -0.4877 2.0138 25 7 5.2706 -0.5608 3.1461 26 14 7.6269 -1.2727 1.8728 27 1 8.6658 -0.2851 2.2609 28 1 7.7022 -2.4504 2.7743 29 1 7.8555 -1.7068 0.4712 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 0.5497 2.2174 1.3538 36 1 1.9886 1.5384 2.1546 37 1 0.2764 6.9684 1.6688 38 1 3.6916 9.2561 2.2931 39 1 5.9439 5.5255 1.2550 40 1 7.1553 6.2188 2.3592 41 1 5.7507 5.3437 3.0152 42 1 3.9642 4.6438 1.0940 43 1 4.2157 3.1208 1.9852 44 1 3.6220 3.4138 -0.9958 45 1 5.1585 2.8896 -0.2653 46 1 3.6567 0.6952 1.8627 47 1 5.6562 -1.0219 3.9074 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037934195.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:33 Heat of formation + Delta-G solvation = 7.953174 kcal Electronic energy + Delta-G solvation = -30433.647192 eV Core-core repulsion = 26425.256995 eV Total energy + Delta-G solvation = -4008.390196 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.76926 -39.89793 -38.64790 -37.74563 -35.07287 -33.94830 -33.71704 -31.72201 -31.39389 -29.43979 -28.59178 -27.83948 -26.10031 -24.47437 -24.03648 -23.59034 -23.44547 -20.91304 -20.57349 -18.73554 -18.60767 -17.63215 -17.39817 -17.09904 -16.61218 -16.34548 -15.92087 -15.27668 -14.72984 -14.71429 -14.50686 -14.06277 -14.03270 -13.77746 -13.40396 -13.29129 -13.14586 -12.97431 -12.70143 -12.58330 -12.10028 -11.98464 -11.84944 -11.51146 -11.42553 -11.22282 -11.08581 -10.92091 -10.81131 -10.54600 -10.37807 -10.28933 -10.23708 -10.19448 -9.80732 -9.58066 -9.11756 -9.03690 -8.78402 -8.25937 -6.99436 -5.81900 -3.10044 0.17819 0.79156 2.62470 2.68166 2.98028 3.37733 3.44333 3.45657 3.52996 3.70329 3.97948 4.17758 4.54330 4.62346 4.87401 5.08382 5.14312 5.17020 5.22497 5.26048 5.35032 5.54908 5.55659 5.60064 5.67465 5.73060 5.78174 5.80210 5.86504 5.93584 6.07731 6.15850 6.29402 6.36764 6.39759 6.43945 6.53893 6.59889 6.70680 6.74162 6.77461 6.85918 6.94480 7.00671 7.34215 7.61461 7.65467 8.15760 8.36530 9.48213 10.05293 10.40586 11.40504 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010575 B = 0.004500 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2647.119299 B = 6220.436611 C = 8313.569187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.066 0.934 5 C 0.115 3.885 6 N -0.573 5.573 7 C 0.566 3.434 8 O -0.539 6.539 9 C 0.083 3.917 10 C 0.062 3.938 11 N -0.405 5.405 12 C 0.061 3.939 13 C 0.270 3.730 14 O -0.297 6.297 15 C 0.029 3.971 16 N -0.457 5.457 17 C 0.080 3.920 18 C -0.151 4.151 19 C 0.177 3.823 20 H 0.049 0.951 21 N -0.717 5.717 22 C -0.236 4.236 23 H 0.069 0.931 24 C -0.011 4.011 25 N -0.932 5.932 26 Si 0.903 3.097 27 H -0.291 1.291 28 H -0.293 1.293 29 H -0.283 1.283 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.185 0.815 38 H 0.181 0.819 39 H 0.066 0.934 40 H 0.104 0.896 41 H 0.068 0.932 42 H 0.127 0.873 43 H 0.081 0.919 44 H 0.044 0.956 45 H 0.072 0.928 46 H 0.383 0.617 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.348 14.141 -4.044 15.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.085 0.915 5 C -0.007 4.007 6 N -0.302 5.302 7 C 0.351 3.649 8 O -0.417 6.417 9 C -0.056 4.056 10 C -0.096 4.096 11 N -0.119 5.119 12 C -0.104 4.104 13 C 0.086 3.914 14 O -0.202 6.202 15 C -0.066 4.066 16 N -0.190 5.190 17 C -0.042 4.042 18 C -0.192 4.192 19 C 0.067 3.933 20 H 0.067 0.933 21 N -0.360 5.360 22 C -0.367 4.367 23 H 0.087 0.913 24 C -0.207 4.207 25 N -0.581 5.581 26 Si 0.734 3.266 27 H -0.219 1.219 28 H -0.219 1.219 29 H -0.209 1.209 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.202 0.798 38 H 0.198 0.802 39 H 0.085 0.915 40 H 0.122 0.878 41 H 0.087 0.913 42 H 0.143 0.857 43 H 0.099 0.901 44 H 0.062 0.938 45 H 0.090 0.910 46 H 0.219 0.781 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.648 14.171 -4.025 15.447 hybrid contribution 1.201 -0.924 0.243 1.535 sum -3.447 13.246 -3.782 14.200 Atomic orbital electron populations 1.21853 0.96771 1.01055 1.01378 1.21418 0.94303 0.95662 1.03407 1.21739 0.97466 0.96156 0.96836 0.91530 1.21817 0.98859 0.81274 0.98716 1.48031 1.09571 1.05895 1.66749 1.17636 0.86158 0.82738 0.78362 1.90770 1.12856 1.85044 1.53019 1.22105 0.88659 0.96531 0.98302 1.23596 1.02425 0.86674 0.96944 1.68611 1.09602 1.26325 1.07363 1.23191 0.89173 0.98294 0.99700 1.21269 0.86363 0.91031 0.92751 1.86275 1.13098 1.35058 1.85771 1.23174 0.95356 0.84566 1.03470 1.68390 1.11689 1.24442 1.14523 1.22931 0.77910 1.04440 0.98892 1.22562 1.01533 0.99140 0.95977 1.20236 0.89702 0.90824 0.92545 0.93253 1.42452 1.18999 1.63985 1.10548 1.19207 0.93557 1.26895 0.97050 0.91330 1.24679 0.98466 1.01501 0.96044 1.69646 1.37982 1.48154 1.02275 0.86261 0.84471 0.78794 0.77056 1.21893 1.21897 1.20869 0.92773 0.93147 0.93346 0.90467 0.91995 0.89405 0.90351 0.79767 0.80189 0.91509 0.87785 0.91301 0.85679 0.90108 0.93770 0.90958 0.78146 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.67 37.16 0.36 -1.69 16 2 C -0.11 -1.73 5.19 -26.73 -0.14 -1.87 16 3 C -0.10 -1.65 2.14 -90.50 -0.19 -1.84 16 4 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 5 C 0.12 1.92 5.03 -3.71 -0.02 1.90 16 6 N -0.57 -9.44 2.97 -173.77 -0.52 -9.96 16 7 C 0.57 9.16 7.66 -12.20 -0.09 9.07 16 8 O -0.54 -9.55 15.81 5.36 0.08 -9.47 16 9 C 0.08 1.17 6.58 -82.86 -0.55 0.62 16 10 C 0.06 0.76 10.76 -17.02 -0.18 0.58 16 11 N -0.41 -4.69 10.48 -12.58 -0.13 -4.82 16 12 C 0.06 0.63 11.18 -17.04 -0.19 0.44 16 13 C 0.27 3.17 7.50 -16.95 -0.13 3.05 16 14 O -0.30 -3.25 10.49 -18.72 -0.20 -3.45 16 15 C 0.03 0.30 10.25 101.05 1.04 1.34 16 16 N -0.46 -6.17 5.27 -9.69 -0.05 -6.22 16 17 C 0.08 1.31 5.64 -3.71 -0.02 1.29 16 18 C -0.15 -2.51 5.78 -26.61 -0.15 -2.66 16 19 C 0.18 3.26 2.53 -67.89 -0.17 3.09 16 20 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 21 N -0.72 -16.13 3.72 -53.39 -0.20 -16.33 16 22 C -0.24 -6.02 9.93 -15.06 -0.15 -6.17 16 23 H 0.07 1.72 7.83 -52.48 -0.41 1.31 16 24 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 25 N -0.93 -26.62 13.06 55.49 0.72 -25.89 16 26 Si 0.90 21.40 29.55 -169.99 -5.02 16.37 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 30 H 0.05 0.72 6.70 -51.93 -0.35 0.37 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 1.41 7.69 -51.93 -0.40 1.01 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.09 1.44 5.72 -51.93 -0.30 1.14 16 36 H 0.08 1.45 6.64 -51.93 -0.35 1.11 16 37 H 0.19 2.04 7.67 -52.49 -0.40 1.64 16 38 H 0.18 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.07 0.71 7.38 -51.93 -0.38 0.33 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.79 8.11 -51.93 -0.42 0.37 16 42 H 0.13 1.88 3.06 -84.27 -0.26 1.63 16 43 H 0.08 1.56 7.74 -51.93 -0.40 1.16 16 44 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 46 H 0.38 9.29 5.94 -40.82 -0.24 9.05 16 47 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 373.91 15.07 5.63 5.63 Total: -1.00 -29.25 373.91 -7.21 -36.45 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -6.85 Total: 10.92 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -0.69 Total: 6.75 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: -0.17 Total: -63.22 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -0.11 Total: -12.92 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.25 -7.21 -36.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037934195.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.407 kcal (2) G-P(sol) polarization free energy of solvation -29.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds