Wall clock time and date at job start Tue Mar 31 2020 19:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.46844 * 2 1 4 4 H 1.09001 * 109.49661 * 55.07397 * 3 2 1 5 5 C 1.53181 * 109.50094 * 295.00102 * 3 2 1 6 6 N 1.46925 * 108.77815 * 185.41376 * 5 3 2 7 7 C 1.34779 * 120.63398 * 233.58650 * 6 5 3 8 8 O 1.21673 * 119.99518 * 6.80548 * 7 6 5 9 9 C 1.46805 * 120.00046 * 186.80614 * 7 6 5 10 10 C 1.36356 * 125.84803 * 204.00114 * 9 7 6 11 11 C 1.41306 * 107.01088 * 180.26764 * 10 9 7 12 12 C 1.47385 * 126.46002 * 179.97438 * 11 10 9 13 13 N 1.34778 * 120.00204 * 180.02562 * 12 11 10 14 14 O 1.21615 * 120.00516 * 0.02562 * 12 11 10 15 15 C 1.38205 * 107.07175 * 359.97438 * 11 10 9 16 16 N 1.34255 * 108.40179 * 0.02562 * 15 11 10 17 17 H 0.97001 * 125.39808 * 180.02562 * 16 15 11 18 18 C 1.46927 * 118.73878 * 53.85908 * 6 5 3 19 19 C 1.53622 * 108.54305 * 306.10086 * 18 6 5 20 20 C 1.53032 * 109.24798 * 54.85106 * 19 18 6 21 21 H 1.09006 * 109.46073 * 58.53021 * 20 19 18 22 22 N 1.46494 * 109.46509 * 178.49468 * 20 19 18 23 23 C 1.36945 * 119.99812 * 275.06986 * 22 20 19 24 24 H 1.07997 * 119.99743 * 359.97438 * 23 22 20 25 25 C 1.38814 * 119.99819 * 179.97438 * 23 22 20 26 26 N 1.31615 * 120.00074 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 119.99681 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.46554 * 90.00806 * 27 25 23 29 29 H 1.48502 * 109.46867 * 210.00406 * 27 25 23 30 30 H 1.48494 * 109.47429 * 330.00564 * 27 25 23 31 31 H 1.09000 * 109.47346 * 59.99584 * 1 2 3 32 32 H 1.09002 * 109.47421 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47349 * 299.99557 * 1 2 3 34 34 H 1.08997 * 109.47349 * 240.00443 * 2 1 3 35 35 H 1.08993 * 109.47382 * 120.00004 * 2 1 3 36 36 H 1.08998 * 109.58893 * 65.62261 * 5 3 2 37 37 H 1.09002 * 109.70565 * 305.26902 * 5 3 2 38 38 H 1.08005 * 126.49327 * 0.26237 * 10 9 7 39 39 H 0.97007 * 119.99790 * 0.02562 * 13 12 11 40 40 H 0.96991 * 120.01010 * 180.02562 * 13 12 11 41 41 H 1.08004 * 125.79805 * 180.02562 * 15 11 10 42 42 H 1.09010 * 109.58679 * 65.92568 * 18 6 5 43 43 H 1.08994 * 109.59334 * 186.35015 * 18 6 5 44 44 H 1.09000 * 109.63079 * 294.85841 * 19 18 6 45 45 H 1.08999 * 109.43105 * 174.72512 * 19 18 6 46 46 H 0.96999 * 120.00122 * 95.06753 * 22 20 19 47 47 H 0.97001 * 120.00052 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6065 1.9816 0.8424 5 6 1.6349 2.1281 -1.3086 6 7 2.2413 3.4657 -1.3492 7 6 1.4814 4.5580 -1.5635 8 8 0.2695 4.4579 -1.6022 9 6 2.1161 5.8686 -1.7503 10 6 1.5317 7.0789 -1.5200 11 6 2.4915 8.0676 -1.8332 12 6 2.3087 9.5270 -1.7380 13 7 3.3176 10.3558 -2.0723 14 8 1.2475 9.9835 -1.3579 15 6 3.6339 7.4080 -2.2454 16 7 3.4022 6.0866 -2.1938 17 1 4.0396 5.3947 -2.4305 18 6 3.6928 3.5895 -1.1577 19 6 4.0740 2.8880 0.1548 20 6 3.5655 1.4450 0.1217 21 1 3.9988 0.9268 -0.7338 22 7 3.9577 0.7608 1.3563 23 6 5.1962 0.1850 1.4562 24 1 5.8835 0.2349 0.6247 25 6 5.5680 -0.4629 2.6262 26 7 4.7301 -0.5242 3.6393 27 14 7.2571 -1.2490 2.7621 28 1 8.2230 -0.2567 3.2984 29 1 7.1875 -2.4165 3.6772 30 1 7.7035 -1.6986 1.4191 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5137 0.8900 34 1 1.8933 -0.5137 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 0.5496 2.2174 -1.3538 37 1 1.9887 1.5407 -2.1560 38 1 0.5259 7.2495 -1.1656 39 1 4.1640 9.9917 -2.3759 40 1 3.1975 11.3162 -2.0094 41 1 4.5562 7.8760 -2.5563 42 1 4.2130 3.1179 -1.9915 43 1 3.9657 4.6433 -1.1031 44 1 3.6218 3.4139 0.9958 45 1 5.1584 2.8893 0.2650 46 1 3.3402 0.7157 2.1030 47 1 4.9898 -0.9772 4.4568 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037949571.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:52 Heat of formation + Delta-G solvation = -11.668114 kcal Electronic energy + Delta-G solvation = -29121.474634 eV Core-core repulsion = 25112.233595 eV Total energy + Delta-G solvation = -4009.241039 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.02158 -39.89052 -38.93438 -37.77457 -34.94594 -33.94247 -33.83262 -31.83709 -31.62006 -30.09678 -29.62080 -28.46804 -25.42202 -24.27079 -23.48715 -23.31496 -21.83033 -20.89370 -20.51352 -19.92435 -19.62823 -18.19084 -17.19373 -17.03430 -16.80679 -16.27753 -15.74309 -15.59456 -15.01876 -14.85110 -14.28105 -14.15812 -14.02460 -13.80091 -13.73696 -13.57241 -13.41094 -13.26604 -13.05536 -12.75609 -12.63252 -12.17686 -11.88941 -11.71452 -11.37730 -11.02540 -10.93161 -10.80690 -10.44111 -10.32067 -10.27997 -10.20801 -10.07017 -9.93411 -9.80918 -9.68347 -9.37879 -8.97873 -8.78622 -8.51793 -7.04742 -5.84693 -3.14087 1.19548 1.61092 2.60032 2.81199 3.14340 3.36089 3.38056 3.40793 3.41680 3.43744 4.34621 4.45883 4.50339 4.65534 4.73576 4.94565 5.10760 5.12272 5.16006 5.29813 5.34613 5.51329 5.52902 5.59726 5.61466 5.70809 5.82865 5.89274 6.03316 6.07109 6.14013 6.20166 6.29004 6.31064 6.38404 6.40223 6.50796 6.54626 6.59039 6.72145 6.85809 6.89470 6.95977 7.12930 7.32509 7.60285 8.05110 8.11177 8.33110 9.44693 10.01585 10.36324 11.37525 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013675 B = 0.002844 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.040678 B = 9842.126769 C =11272.028921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.105 4.105 4 H 0.072 0.928 5 C 0.120 3.880 6 N -0.605 5.605 7 C 0.587 3.413 8 O -0.529 6.529 9 C -0.047 4.047 10 C -0.050 4.050 11 C -0.237 4.237 12 C 0.595 3.405 13 N -0.856 5.856 14 O -0.545 6.545 15 C 0.065 3.935 16 N -0.524 5.524 17 H 0.427 0.573 18 C 0.089 3.911 19 C -0.149 4.149 20 C 0.184 3.816 21 H 0.048 0.952 22 N -0.719 5.719 23 C -0.241 4.241 24 H 0.069 0.931 25 C -0.011 4.011 26 N -0.930 5.930 27 Si 0.905 3.095 28 H -0.290 1.290 29 H -0.291 1.291 30 H -0.282 1.282 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.158 0.842 39 H 0.398 0.602 40 H 0.403 0.597 41 H 0.180 0.820 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.063 0.937 45 H 0.077 0.923 46 H 0.385 0.615 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.234 14.508 -15.197 21.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.125 4.125 4 H 0.090 0.910 5 C -0.002 4.002 6 N -0.338 5.338 7 C 0.375 3.625 8 O -0.405 6.405 9 C -0.158 4.158 10 C -0.075 4.075 11 C -0.248 4.248 12 C 0.381 3.619 13 N -0.420 5.420 14 O -0.422 6.422 15 C -0.077 4.077 16 N -0.123 5.123 17 H 0.270 0.730 18 C -0.035 4.035 19 C -0.191 4.191 20 C 0.074 3.926 21 H 0.066 0.934 22 N -0.359 5.359 23 C -0.372 4.372 24 H 0.087 0.913 25 C -0.207 4.207 26 N -0.578 5.578 27 Si 0.736 3.264 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.086 0.914 38 H 0.175 0.825 39 H 0.226 0.774 40 H 0.234 0.766 41 H 0.197 0.803 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.081 0.919 45 H 0.095 0.905 46 H 0.219 0.781 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.945 14.258 -14.985 20.706 hybrid contribution 1.805 -0.462 0.239 1.879 sum 0.860 13.796 -14.746 20.212 Atomic orbital electron populations 1.21846 0.96706 1.01097 1.01405 1.21445 0.94468 0.95541 1.03485 1.21791 0.97561 0.96399 0.96753 0.90995 1.21807 0.99660 0.80715 0.97993 1.48081 1.08190 1.06930 1.70572 1.17102 0.86357 0.82024 0.77025 1.90837 1.12929 1.84823 1.51907 1.20116 0.85691 0.95397 1.14608 1.21062 0.99553 0.88568 0.98344 1.19561 0.95976 0.92969 1.16257 1.17406 0.83253 0.85416 0.75780 1.43677 1.16514 1.10294 1.71480 1.90835 1.26658 1.77762 1.46990 1.22432 0.99601 0.83251 1.02401 1.42556 1.12471 1.07773 1.49532 0.72963 1.22349 0.79978 1.00991 1.00181 1.22759 1.02221 0.99494 0.94599 1.20167 0.90842 0.90265 0.91346 0.93428 1.42406 1.16516 1.64321 1.12706 1.19182 0.91792 1.27654 0.98605 0.91289 1.24738 0.98125 1.01430 0.96428 1.69654 1.35210 1.48163 1.04731 0.86234 0.84089 0.78792 0.77295 1.21781 1.21771 1.20811 0.93194 0.93129 0.92896 0.92468 0.89743 0.88811 0.91445 0.82482 0.77434 0.76642 0.80266 0.91163 0.90490 0.91867 0.90489 0.78114 0.93431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.67 37.15 0.36 -1.71 16 2 C -0.11 -1.73 5.31 -26.73 -0.14 -1.87 16 3 C -0.11 -1.64 1.93 -90.50 -0.17 -1.81 16 4 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 5 C 0.12 1.64 5.33 -3.72 -0.02 1.62 16 6 N -0.61 -7.89 2.97 -174.00 -0.52 -8.40 16 7 C 0.59 8.46 7.62 -12.80 -0.10 8.36 16 8 O -0.53 -9.35 16.37 5.21 0.09 -9.27 16 9 C -0.05 -0.56 6.31 -82.41 -0.52 -1.08 16 10 C -0.05 -0.64 10.45 -39.09 -0.41 -1.05 16 11 C -0.24 -2.42 6.13 -105.02 -0.64 -3.07 16 12 C 0.59 6.42 8.09 -12.54 -0.10 6.31 16 13 N -0.86 -4.85 8.86 30.42 0.27 -4.58 16 14 O -0.55 -8.44 17.76 5.26 0.09 -8.35 16 15 C 0.07 0.42 11.43 -16.50 -0.19 0.23 16 16 N -0.52 -4.06 4.66 -9.31 -0.04 -4.11 16 17 H 0.43 2.33 6.36 -40.82 -0.26 2.07 16 18 C 0.09 0.99 5.32 -3.49 -0.02 0.97 16 19 C -0.15 -2.28 5.67 -26.39 -0.15 -2.43 16 20 C 0.18 3.24 2.19 -67.89 -0.15 3.09 16 21 H 0.05 0.85 8.08 -51.93 -0.42 0.43 16 22 N -0.72 -16.47 4.33 -53.38 -0.23 -16.70 16 23 C -0.24 -6.20 9.93 -15.05 -0.15 -6.35 16 24 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 25 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 26 N -0.93 -26.98 13.06 55.49 0.72 -26.26 16 27 Si 0.90 21.40 29.55 -169.99 -5.02 16.37 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 29 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 30 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 31 H 0.05 0.62 6.70 -51.93 -0.35 0.27 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.08 1.58 7.22 -51.93 -0.37 1.21 16 36 H 0.09 1.36 5.72 -51.93 -0.30 1.06 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.16 2.19 8.06 -52.48 -0.42 1.76 16 39 H 0.40 0.88 7.74 -40.82 -0.32 0.56 16 40 H 0.40 1.88 8.93 -40.82 -0.36 1.51 16 41 H 0.18 0.28 7.44 -52.48 -0.39 -0.11 16 42 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 43 H 0.08 0.70 4.21 -51.93 -0.22 0.48 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.38 9.66 7.51 -40.82 -0.31 9.35 16 47 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 379.00 15.07 5.71 5.71 Total: -1.00 -35.19 379.00 -8.08 -43.27 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -6.65 Total: 11.50 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -2.50 Total: 0.82 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: 0.20 Total: -60.05 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.18 Total: -17.62 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.19 -8.08 -43.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037949571.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.599 kcal (2) G-P(sol) polarization free energy of solvation -35.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds