Wall clock time and date at job start Tue Mar 31 2020 19:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.46844 * 2 1 4 4 H 1.09001 * 109.49661 * 55.07397 * 3 2 1 5 5 C 1.53181 * 109.50094 * 295.00102 * 3 2 1 6 6 N 1.46925 * 108.77815 * 185.41376 * 5 3 2 7 7 C 1.34779 * 120.63398 * 233.58650 * 6 5 3 8 8 O 1.21673 * 119.99518 * 6.80548 * 7 6 5 9 9 C 1.46805 * 120.00046 * 186.80614 * 7 6 5 10 10 C 1.36356 * 125.84803 * 204.00114 * 9 7 6 11 11 C 1.41306 * 107.01088 * 180.26764 * 10 9 7 12 12 C 1.47385 * 126.46002 * 179.97438 * 11 10 9 13 13 N 1.34778 * 120.00204 * 180.02562 * 12 11 10 14 14 O 1.21615 * 120.00516 * 0.02562 * 12 11 10 15 15 C 1.38205 * 107.07175 * 359.97438 * 11 10 9 16 16 N 1.34255 * 108.40179 * 0.02562 * 15 11 10 17 17 H 0.97001 * 125.39808 * 180.02562 * 16 15 11 18 18 C 1.46927 * 118.73878 * 53.85908 * 6 5 3 19 19 C 1.53622 * 108.54305 * 306.10086 * 18 6 5 20 20 C 1.53032 * 109.24798 * 54.85106 * 19 18 6 21 21 H 1.09006 * 109.46073 * 58.53021 * 20 19 18 22 22 N 1.46494 * 109.46509 * 178.49468 * 20 19 18 23 23 C 1.36945 * 119.99812 * 275.06986 * 22 20 19 24 24 H 1.07997 * 119.99743 * 359.97438 * 23 22 20 25 25 C 1.38814 * 119.99819 * 179.97438 * 23 22 20 26 26 N 1.31615 * 120.00074 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 119.99681 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.46554 * 90.00806 * 27 25 23 29 29 H 1.48502 * 109.46867 * 210.00406 * 27 25 23 30 30 H 1.48494 * 109.47429 * 330.00564 * 27 25 23 31 31 H 1.09000 * 109.47346 * 59.99584 * 1 2 3 32 32 H 1.09002 * 109.47421 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47349 * 299.99557 * 1 2 3 34 34 H 1.08997 * 109.47349 * 240.00443 * 2 1 3 35 35 H 1.08993 * 109.47382 * 120.00004 * 2 1 3 36 36 H 1.08998 * 109.58893 * 65.62261 * 5 3 2 37 37 H 1.09002 * 109.70565 * 305.26902 * 5 3 2 38 38 H 1.08005 * 126.49327 * 0.26237 * 10 9 7 39 39 H 0.97007 * 119.99790 * 0.02562 * 13 12 11 40 40 H 0.96991 * 120.01010 * 180.02562 * 13 12 11 41 41 H 1.08004 * 125.79805 * 180.02562 * 15 11 10 42 42 H 1.09010 * 109.58679 * 65.92568 * 18 6 5 43 43 H 1.08994 * 109.59334 * 186.35015 * 18 6 5 44 44 H 1.09000 * 109.63079 * 294.85841 * 19 18 6 45 45 H 1.08999 * 109.43105 * 174.72512 * 19 18 6 46 46 H 0.96999 * 120.00122 * 95.06753 * 22 20 19 47 47 H 0.97001 * 120.00052 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6065 1.9816 0.8424 5 6 1.6349 2.1281 -1.3086 6 7 2.2413 3.4657 -1.3492 7 6 1.4814 4.5580 -1.5635 8 8 0.2695 4.4579 -1.6022 9 6 2.1161 5.8686 -1.7503 10 6 1.5317 7.0789 -1.5200 11 6 2.4915 8.0676 -1.8332 12 6 2.3087 9.5270 -1.7380 13 7 3.3176 10.3558 -2.0723 14 8 1.2475 9.9835 -1.3579 15 6 3.6339 7.4080 -2.2454 16 7 3.4022 6.0866 -2.1938 17 1 4.0396 5.3947 -2.4305 18 6 3.6928 3.5895 -1.1577 19 6 4.0740 2.8880 0.1548 20 6 3.5655 1.4450 0.1217 21 1 3.9988 0.9268 -0.7338 22 7 3.9577 0.7608 1.3563 23 6 5.1962 0.1850 1.4562 24 1 5.8835 0.2349 0.6247 25 6 5.5680 -0.4629 2.6262 26 7 4.7301 -0.5242 3.6393 27 14 7.2571 -1.2490 2.7621 28 1 8.2230 -0.2567 3.2984 29 1 7.1875 -2.4165 3.6772 30 1 7.7035 -1.6986 1.4191 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5137 0.8900 34 1 1.8933 -0.5137 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 0.5496 2.2174 -1.3538 37 1 1.9887 1.5407 -2.1560 38 1 0.5259 7.2495 -1.1656 39 1 4.1640 9.9917 -2.3759 40 1 3.1975 11.3162 -2.0094 41 1 4.5562 7.8760 -2.5563 42 1 4.2130 3.1179 -1.9915 43 1 3.9657 4.6433 -1.1031 44 1 3.6218 3.4139 0.9958 45 1 5.1584 2.8893 0.2650 46 1 3.3402 0.7157 2.1030 47 1 4.9898 -0.9772 4.4568 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037949571.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:51 Heat of formation + Delta-G solvation = -39.264345 kcal Electronic energy + Delta-G solvation = -29122.671297 eV Core-core repulsion = 25112.233595 eV Total energy + Delta-G solvation = -4010.437702 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.83572 -40.96869 -39.80138 -39.04524 -36.30842 -35.37243 -34.63145 -33.47648 -32.42008 -31.18359 -30.97762 -29.64025 -26.84568 -25.42882 -24.83121 -24.32459 -22.92125 -22.16991 -21.39543 -20.97418 -20.61947 -19.23424 -18.92391 -17.85286 -17.63218 -17.21765 -16.84865 -16.59218 -16.51848 -15.81082 -15.63836 -15.50483 -15.21668 -14.84215 -14.76081 -14.68524 -14.63359 -14.51610 -14.27786 -13.96851 -13.59180 -13.36672 -13.12655 -13.06275 -12.83324 -12.66618 -12.55903 -12.20589 -12.08221 -11.84848 -11.60096 -11.53693 -11.28343 -11.16897 -11.10914 -10.83532 -10.61874 -10.17875 -9.82867 -9.37015 -8.95805 -7.89935 -5.17815 0.40598 0.77324 1.49460 1.50312 1.58479 1.74513 1.86962 2.24066 2.57013 2.59056 2.76459 3.42553 3.43887 3.73210 3.78302 3.86127 3.94241 4.01179 4.07326 4.14221 4.26959 4.28598 4.38963 4.42673 4.60581 4.64406 4.76825 4.77824 4.78245 4.84582 4.89603 5.00154 5.02508 5.13722 5.25815 5.33666 5.37967 5.43692 5.51529 5.55669 5.59137 5.63971 5.99548 6.24670 6.30688 6.32034 6.62241 6.96664 7.37434 7.47585 8.13657 8.36412 9.33752 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013675 B = 0.002844 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.040678 B = 9842.126769 C =11272.028921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 C -0.094 4.094 4 H 0.045 0.955 5 C 0.126 3.874 6 N -0.603 5.603 7 C 0.584 3.416 8 O -0.573 6.573 9 C -0.066 4.066 10 C -0.073 4.073 11 C -0.267 4.267 12 C 0.590 3.410 13 N -0.828 5.828 14 O -0.607 6.607 15 C 0.120 3.880 16 N -0.509 5.509 17 H 0.442 0.558 18 C 0.096 3.904 19 C -0.142 4.142 20 C 0.179 3.821 21 H 0.056 0.944 22 N -0.732 5.732 23 C -0.227 4.227 24 H 0.082 0.918 25 C -0.079 4.079 26 N -0.973 5.973 27 Si 0.967 3.033 28 H -0.290 1.290 29 H -0.304 1.304 30 H -0.266 1.266 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.041 0.959 34 H 0.069 0.931 35 H 0.046 0.954 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.126 0.874 39 H 0.419 0.581 40 H 0.411 0.589 41 H 0.245 0.755 42 H 0.108 0.892 43 H 0.103 0.897 44 H 0.037 0.963 45 H 0.075 0.925 46 H 0.369 0.631 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.547 15.623 -18.487 24.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.144 4.144 3 C -0.115 4.115 4 H 0.064 0.936 5 C 0.004 3.996 6 N -0.334 5.334 7 C 0.374 3.626 8 O -0.453 6.453 9 C -0.176 4.176 10 C -0.100 4.100 11 C -0.276 4.276 12 C 0.378 3.622 13 N -0.392 5.392 14 O -0.490 6.490 15 C -0.024 4.024 16 N -0.110 5.110 17 H 0.289 0.711 18 C -0.026 4.026 19 C -0.183 4.183 20 C 0.071 3.929 21 H 0.074 0.926 22 N -0.371 5.371 23 C -0.359 4.359 24 H 0.100 0.900 25 C -0.271 4.271 26 N -0.624 5.624 27 Si 0.797 3.203 28 H -0.217 1.217 29 H -0.231 1.231 30 H -0.191 1.191 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.144 0.856 39 H 0.251 0.749 40 H 0.242 0.758 41 H 0.261 0.739 42 H 0.126 0.874 43 H 0.120 0.880 44 H 0.056 0.944 45 H 0.094 0.906 46 H 0.200 0.800 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.464 15.387 -18.361 24.082 hybrid contribution 0.784 -0.725 1.197 1.604 sum 3.248 14.663 -17.163 22.806 Atomic orbital electron populations 1.21788 0.95166 1.01880 1.01610 1.21346 0.95827 0.95130 1.02111 1.21643 0.96155 0.96455 0.97207 0.93624 1.21711 0.99431 0.81241 0.97247 1.48116 1.08980 1.06364 1.69991 1.17442 0.85943 0.82950 0.76253 1.90807 1.14948 1.85551 1.53988 1.19573 0.87664 0.93574 1.16820 1.21027 0.99289 0.90405 0.99271 1.19574 0.97020 0.92553 1.18476 1.17592 0.83231 0.86076 0.75304 1.43411 1.16130 1.10296 1.69355 1.90807 1.29320 1.78693 1.50166 1.23284 0.99801 0.82024 0.97271 1.42461 1.10985 1.08895 1.48632 0.71079 1.22460 0.78824 1.02487 0.98847 1.22540 1.01674 0.97714 0.96334 1.20427 0.92045 0.91215 0.89219 0.92582 1.42619 1.15544 1.64936 1.13952 1.19612 0.92482 1.25507 0.98301 0.89984 1.25507 1.01541 1.03356 0.96660 1.69828 1.37152 1.50187 1.05213 0.85221 0.80218 0.77314 0.77504 1.21713 1.23127 1.19057 0.91675 0.92063 0.93990 0.91210 0.93547 0.89712 0.88902 0.85587 0.74920 0.75770 0.73945 0.87411 0.87975 0.94395 0.90647 0.79990 0.94395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.98 9.67 71.98 0.70 -3.29 16 2 C -0.11 -3.32 5.31 30.59 0.16 -3.15 16 3 C -0.09 -2.95 1.93 -10.72 -0.02 -2.98 16 4 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 5 C 0.13 3.26 5.33 86.36 0.46 3.72 16 6 N -0.60 -14.63 2.97 -822.65 -2.44 -17.07 16 7 C 0.58 16.53 7.62 86.48 0.66 17.19 16 8 O -0.57 -20.95 16.37 -4.26 -0.07 -21.02 16 9 C -0.07 -1.47 6.31 40.01 0.25 -1.22 16 10 C -0.07 -1.91 10.45 22.59 0.24 -1.67 16 11 C -0.27 -4.90 6.13 -20.12 -0.12 -5.03 16 12 C 0.59 11.99 8.09 86.65 0.70 12.69 16 13 N -0.83 -6.71 8.86 -175.91 -1.56 -8.27 16 14 O -0.61 -19.44 17.76 -4.08 -0.07 -19.51 16 15 C 0.12 0.90 11.43 84.31 0.96 1.87 16 16 N -0.51 -5.60 4.66 -183.35 -0.85 -6.46 16 17 H 0.44 2.20 6.36 -92.71 -0.59 1.61 16 18 C 0.10 1.79 5.32 86.51 0.46 2.25 16 19 C -0.14 -4.09 5.67 30.81 0.17 -3.91 16 20 C 0.18 6.15 2.19 45.02 0.10 6.25 16 21 H 0.06 1.86 8.08 -2.38 -0.02 1.84 16 22 N -0.73 -33.97 4.33 -322.81 -1.40 -35.37 16 23 C -0.23 -11.58 9.93 84.03 0.83 -10.75 16 24 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 25 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 26 N -0.97 -58.29 13.06 21.65 0.28 -58.01 16 27 Si 0.97 44.13 29.55 68.60 2.03 46.16 16 28 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 29 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 30 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 31 H 0.06 1.57 6.70 -2.39 -0.02 1.55 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.05 1.81 7.22 -2.39 -0.02 1.79 16 36 H 0.08 2.41 5.72 -2.39 -0.01 2.40 16 37 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.13 3.94 8.06 -2.91 -0.02 3.91 16 39 H 0.42 -0.34 7.74 -92.70 -0.72 -1.06 16 40 H 0.41 2.73 8.93 -92.71 -0.83 1.90 16 41 H 0.24 -1.34 7.44 -2.91 -0.02 -1.36 16 42 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 43 H 0.10 1.41 4.21 -2.39 -0.01 1.40 16 44 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.37 19.34 7.51 -92.71 -0.70 18.65 16 47 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -84.77 379.00 0.15 -84.62 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: -1.78 Total: 26.81 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 6.02 Total: 8.12 kcal Atomic # 7 Polarization: -119.20 SS G_CDS: -5.97 Total: -125.17 kcal Atomic # 8 Polarization: -40.38 SS G_CDS: -0.14 Total: -40.53 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -84.77 0.15 -84.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037949571.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.353 kcal (2) G-P(sol) polarization free energy of solvation -84.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds