Wall clock time and date at job start Tue Mar 31 2020 19:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47136 * 2 1 4 4 H 1.09003 * 109.49369 * 54.93731 * 3 2 1 5 5 C 1.53190 * 109.52662 * 294.85573 * 3 2 1 6 6 N 1.46925 * 108.77759 * 185.39646 * 5 3 2 7 7 C 1.34776 * 120.62878 * 233.58999 * 6 5 3 8 8 O 1.21544 * 120.00137 * 359.53637 * 7 6 5 9 9 C 1.47932 * 119.99901 * 179.53862 * 7 6 5 10 10 C 1.39981 * 120.11701 * 202.01931 * 9 7 6 11 11 C 1.38421 * 117.96720 * 179.78302 * 10 9 7 12 12 C 1.39340 * 118.03853 * 0.48723 * 11 10 9 13 13 O 1.35521 * 120.02960 * 179.72616 * 12 11 10 14 14 C 1.42899 * 116.99962 * 180.02562 * 13 12 11 15 15 N 1.32679 * 119.94335 * 359.74938 * 12 11 10 16 16 N 1.28356 * 122.19585 * 359.97438 * 15 12 11 17 17 C 1.46922 * 118.73638 * 53.60633 * 6 5 3 18 18 C 1.53187 * 108.76834 * 306.38056 * 17 6 5 19 19 C 1.53039 * 109.49810 * 175.00131 * 3 2 1 20 20 H 1.08994 * 109.46078 * 61.34090 * 19 3 2 21 21 N 1.46507 * 109.45938 * 301.37014 * 19 3 2 22 22 C 1.36934 * 119.99878 * 154.97430 * 21 19 3 23 23 H 1.08000 * 120.00369 * 0.02562 * 22 21 19 24 24 C 1.38812 * 120.00002 * 179.97438 * 22 21 19 25 25 N 1.31626 * 120.00000 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00213 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47407 * 180.02562 * 26 24 22 28 28 H 1.48504 * 109.47277 * 300.00367 * 26 24 22 29 29 H 1.48498 * 109.47302 * 60.00265 * 26 24 22 30 30 H 1.08998 * 109.47325 * 59.99966 * 1 2 3 31 31 H 1.09002 * 109.47312 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47699 * 299.99684 * 1 2 3 33 33 H 1.09002 * 109.47699 * 240.00316 * 2 1 3 34 34 H 1.08998 * 109.47325 * 120.00034 * 2 1 3 35 35 H 1.09001 * 109.58526 * 305.18506 * 5 3 2 36 36 H 1.09010 * 109.58481 * 65.46304 * 5 3 2 37 37 H 1.08003 * 121.01172 * 0.02562 * 10 9 7 38 38 H 1.07999 * 120.97496 * 180.21973 * 11 10 9 39 39 H 1.09008 * 109.47079 * 60.00168 * 14 13 12 40 40 H 1.08999 * 109.47451 * 180.02562 * 14 13 12 41 41 H 1.08995 * 109.47812 * 300.00355 * 14 13 12 42 42 H 1.09001 * 109.58768 * 66.18817 * 17 6 5 43 43 H 1.09002 * 109.58037 * 186.46125 * 17 6 5 44 44 H 1.08998 * 109.51084 * 294.70213 * 18 17 6 45 45 H 1.08999 * 109.48544 * 174.59781 * 18 17 6 46 46 H 0.96998 * 119.99713 * 334.97182 * 21 19 3 47 47 H 0.96993 * 120.00063 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6046 1.9822 0.8411 5 6 1.6384 2.1276 -1.3101 6 7 2.2449 3.4652 -1.3495 7 6 1.4855 4.5574 -1.5662 8 8 0.2882 4.4404 -1.7397 9 6 2.1092 5.8985 -1.5930 10 6 1.3330 7.0389 -1.3555 11 6 1.9631 8.2711 -1.3867 12 6 3.3285 8.3016 -1.6627 13 8 3.9848 9.4865 -1.7087 14 6 5.3836 9.4425 -1.9975 15 7 3.9856 7.1698 -1.8808 16 7 3.4059 6.0251 -1.8474 17 6 3.6950 3.5895 -1.1485 18 6 4.0732 2.8884 0.1599 19 6 3.5651 1.4451 0.1257 20 1 4.0008 0.9268 -0.7285 21 7 3.9542 0.7614 1.3617 22 6 5.1921 0.1852 1.4649 23 1 5.8819 0.2351 0.6353 24 6 5.5609 -0.4622 2.6361 25 7 4.7204 -0.5226 3.6473 26 14 7.2493 -1.2488 2.7767 27 1 7.3954 -1.8713 4.1170 28 1 7.3990 -2.2902 1.7287 29 1 8.2956 -0.2107 2.5959 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.9964 1.5390 -2.1548 36 1 0.5529 2.2145 -1.3592 37 1 0.2756 6.9596 -1.1503 38 1 1.4116 9.1821 -1.2069 39 1 5.5387 8.9837 -2.9741 40 1 5.7853 10.4558 -2.0039 41 1 5.8939 8.8546 -1.2347 42 1 4.2207 3.1203 -1.9801 43 1 3.9670 4.6436 -1.0925 44 1 3.6185 3.4143 0.9994 45 1 5.1573 2.8898 0.2730 46 1 3.3348 0.7169 2.1068 47 1 4.9780 -0.9753 4.4656 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037960669.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:08 Heat of formation + Delta-G solvation = 12.664924 kcal Electronic energy + Delta-G solvation = -29365.574724 eV Core-core repulsion = 25357.388845 eV Total energy + Delta-G solvation = -4008.185880 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.75541 -40.06301 -38.76019 -37.76665 -34.85183 -33.78611 -33.60598 -32.23008 -31.67388 -29.45506 -28.77978 -27.94171 -26.06479 -24.78809 -24.19858 -23.67388 -22.71736 -20.86319 -20.49835 -19.42723 -18.98232 -18.38528 -17.25154 -17.03640 -16.74800 -16.12330 -15.42082 -15.09001 -15.00754 -14.79052 -14.45414 -14.32195 -13.95057 -13.86353 -13.60632 -13.39963 -13.26159 -12.99565 -12.63432 -12.54814 -12.37092 -12.08524 -11.97718 -11.63582 -11.31248 -11.26429 -10.89178 -10.83768 -10.70063 -10.60675 -10.38203 -10.21650 -10.15522 -10.05907 -9.86738 -9.65811 -9.56193 -9.41646 -8.83471 -8.48498 -6.93358 -5.75607 -3.03912 0.23412 0.36005 2.41272 2.48853 2.87911 3.29319 3.44308 3.49200 3.49718 3.63491 3.88777 4.27233 4.47926 4.51399 4.59592 4.83401 4.91830 4.99978 5.13827 5.22512 5.24918 5.32406 5.38731 5.48484 5.54977 5.61930 5.62399 5.65210 5.72968 5.88189 5.91387 6.12380 6.15960 6.25181 6.38624 6.41597 6.43634 6.48406 6.54626 6.60037 6.71367 6.88101 6.97740 7.10266 7.42316 7.70756 7.97452 8.17831 8.42806 9.54151 10.11788 10.46867 11.46880 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011701 B = 0.003245 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.368357 B = 8626.965587 C =10558.827371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.070 0.930 5 C 0.117 3.883 6 N -0.580 5.580 7 C 0.576 3.424 8 O -0.541 6.541 9 C -0.001 4.001 10 C -0.032 4.032 11 C -0.139 4.139 12 C 0.277 3.723 13 O -0.298 6.298 14 C 0.032 3.968 15 N -0.304 5.304 16 N -0.159 5.159 17 C 0.081 3.919 18 C -0.151 4.151 19 C 0.182 3.818 20 H 0.049 0.951 21 N -0.720 5.720 22 C -0.237 4.237 23 H 0.069 0.931 24 C -0.013 4.013 25 N -0.933 5.933 26 Si 0.905 3.095 27 H -0.292 1.292 28 H -0.286 1.286 29 H -0.287 1.287 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.169 0.831 38 H 0.164 0.836 39 H 0.065 0.935 40 H 0.103 0.897 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.123 0.877 44 H 0.055 0.945 45 H 0.076 0.924 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.911 17.940 -12.228 22.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.088 0.912 5 C -0.005 4.005 6 N -0.310 5.310 7 C 0.361 3.639 8 O -0.418 6.418 9 C -0.149 4.149 10 C -0.060 4.060 11 C -0.168 4.168 12 C 0.093 3.907 13 O -0.201 6.201 14 C -0.063 4.063 15 N -0.161 5.161 16 N -0.007 5.007 17 C -0.042 4.042 18 C -0.192 4.192 19 C 0.072 3.928 20 H 0.067 0.933 21 N -0.361 5.361 22 C -0.368 4.368 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.582 5.582 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.213 1.213 29 H -0.213 1.213 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.186 0.814 38 H 0.181 0.819 39 H 0.084 0.916 40 H 0.121 0.879 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.139 0.861 44 H 0.074 0.926 45 H 0.095 0.905 46 H 0.217 0.783 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.001 17.391 -12.632 22.069 hybrid contribution -0.113 0.189 0.784 0.814 sum -5.114 17.580 -11.848 21.808 Atomic orbital electron populations 1.21846 0.96815 1.01057 1.01290 1.21451 0.94350 0.95616 1.03556 1.21784 0.97831 0.96285 0.96497 0.91192 1.21868 0.99448 0.80955 0.98232 1.48058 1.09405 1.06143 1.67387 1.17441 0.85885 0.82711 0.77902 1.90784 1.13871 1.85692 1.51431 1.22756 0.92440 0.96299 1.03422 1.22260 1.02422 0.89937 0.91410 1.21524 0.92170 1.00243 1.02906 1.21646 0.90821 0.87334 0.90874 1.86211 1.25269 1.24324 1.84303 1.23087 0.77085 1.03887 1.02231 1.73252 1.31197 0.94246 1.17452 1.73087 1.07675 1.13736 1.06202 1.22825 0.78042 1.04714 0.98659 1.22690 1.02231 0.98955 0.95330 1.20226 0.90665 0.90725 0.91204 0.93334 1.42402 1.16428 1.64483 1.12738 1.19183 0.91800 1.27230 0.98597 0.91264 1.24715 0.98102 1.01609 0.96436 1.69649 1.35275 1.48464 1.04766 0.86305 0.84218 0.79191 0.76689 1.21802 1.21312 1.21345 0.93197 0.93161 0.92998 0.92388 0.89727 0.91160 0.88958 0.81364 0.81857 0.91595 0.87905 0.91432 0.91151 0.86078 0.92625 0.90536 0.78251 0.93524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.67 37.15 0.36 -1.73 16 2 C -0.11 -1.80 5.31 -26.73 -0.14 -1.94 16 3 C -0.10 -1.71 1.92 -90.50 -0.17 -1.88 16 4 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 5 C 0.12 1.72 5.33 -3.71 -0.02 1.70 16 6 N -0.58 -8.63 2.97 -173.85 -0.52 -9.15 16 7 C 0.58 8.57 7.61 -12.29 -0.09 8.48 16 8 O -0.54 -8.95 16.01 5.33 0.09 -8.86 16 9 C 0.00 -0.02 6.52 -82.85 -0.54 -0.56 16 10 C -0.03 -0.32 9.72 -38.86 -0.38 -0.69 16 11 C -0.14 -1.18 10.14 -39.10 -0.40 -1.57 16 12 C 0.28 2.87 7.57 -16.78 -0.13 2.74 16 13 O -0.30 -2.68 10.48 -18.26 -0.19 -2.87 16 14 C 0.03 0.21 10.39 101.05 1.05 1.26 16 15 N -0.30 -3.75 10.40 30.54 0.32 -3.43 16 16 N -0.16 -2.12 7.58 33.32 0.25 -1.87 16 17 C 0.08 1.20 6.01 -3.72 -0.02 1.18 16 18 C -0.15 -2.66 5.66 -26.61 -0.15 -2.81 16 19 C 0.18 3.48 2.19 -67.88 -0.15 3.33 16 20 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 21 N -0.72 -17.30 4.33 -53.38 -0.23 -17.54 16 22 C -0.24 -6.37 9.93 -15.06 -0.15 -6.52 16 23 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 25 N -0.93 -27.73 13.06 55.49 0.72 -27.00 16 26 Si 0.90 22.14 29.55 -169.99 -5.02 17.12 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 29 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 30 H 0.05 0.62 6.70 -51.93 -0.35 0.28 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 1.63 7.21 -51.93 -0.37 1.26 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.09 1.36 5.73 -51.92 -0.30 1.06 16 37 H 0.17 1.34 7.86 -52.48 -0.41 0.93 16 38 H 0.16 0.85 8.06 -52.49 -0.42 0.42 16 39 H 0.07 0.44 8.11 -51.92 -0.42 0.02 16 40 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.48 8.11 -51.93 -0.42 0.06 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.12 1.78 3.99 -116.76 -0.47 1.31 16 44 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 46 H 0.38 9.94 7.51 -40.82 -0.31 9.63 16 47 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 379.97 15.07 5.73 5.73 Total: -1.00 -31.60 379.97 -7.13 -38.73 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -7.24 Total: 8.62 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -1.03 Total: 0.53 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: 0.55 Total: -58.99 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: -0.11 Total: -11.73 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.60 -7.13 -38.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037960669.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.392 kcal (2) G-P(sol) polarization free energy of solvation -31.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds