Wall clock time and date at job start Tue Mar 31 2020 19:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47136 * 2 1 4 4 H 1.09003 * 109.49369 * 54.93731 * 3 2 1 5 5 C 1.53190 * 109.52662 * 294.85573 * 3 2 1 6 6 N 1.46925 * 108.77759 * 185.39646 * 5 3 2 7 7 C 1.34776 * 120.62878 * 233.58999 * 6 5 3 8 8 O 1.21544 * 120.00137 * 359.53637 * 7 6 5 9 9 C 1.47932 * 119.99901 * 179.53862 * 7 6 5 10 10 C 1.39981 * 120.11701 * 202.01931 * 9 7 6 11 11 C 1.38421 * 117.96720 * 179.78302 * 10 9 7 12 12 C 1.39340 * 118.03853 * 0.48723 * 11 10 9 13 13 O 1.35521 * 120.02960 * 179.72616 * 12 11 10 14 14 C 1.42899 * 116.99962 * 180.02562 * 13 12 11 15 15 N 1.32679 * 119.94335 * 359.74938 * 12 11 10 16 16 N 1.28356 * 122.19585 * 359.97438 * 15 12 11 17 17 C 1.46922 * 118.73638 * 53.60633 * 6 5 3 18 18 C 1.53187 * 108.76834 * 306.38056 * 17 6 5 19 19 C 1.53039 * 109.49810 * 175.00131 * 3 2 1 20 20 H 1.08994 * 109.46078 * 61.34090 * 19 3 2 21 21 N 1.46507 * 109.45938 * 301.37014 * 19 3 2 22 22 C 1.36934 * 119.99878 * 154.97430 * 21 19 3 23 23 H 1.08000 * 120.00369 * 0.02562 * 22 21 19 24 24 C 1.38812 * 120.00002 * 179.97438 * 22 21 19 25 25 N 1.31626 * 120.00000 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00213 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47407 * 180.02562 * 26 24 22 28 28 H 1.48504 * 109.47277 * 300.00367 * 26 24 22 29 29 H 1.48498 * 109.47302 * 60.00265 * 26 24 22 30 30 H 1.08998 * 109.47325 * 59.99966 * 1 2 3 31 31 H 1.09002 * 109.47312 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47699 * 299.99684 * 1 2 3 33 33 H 1.09002 * 109.47699 * 240.00316 * 2 1 3 34 34 H 1.08998 * 109.47325 * 120.00034 * 2 1 3 35 35 H 1.09001 * 109.58526 * 305.18506 * 5 3 2 36 36 H 1.09010 * 109.58481 * 65.46304 * 5 3 2 37 37 H 1.08003 * 121.01172 * 0.02562 * 10 9 7 38 38 H 1.07999 * 120.97496 * 180.21973 * 11 10 9 39 39 H 1.09008 * 109.47079 * 60.00168 * 14 13 12 40 40 H 1.08999 * 109.47451 * 180.02562 * 14 13 12 41 41 H 1.08995 * 109.47812 * 300.00355 * 14 13 12 42 42 H 1.09001 * 109.58768 * 66.18817 * 17 6 5 43 43 H 1.09002 * 109.58037 * 186.46125 * 17 6 5 44 44 H 1.08998 * 109.51084 * 294.70213 * 18 17 6 45 45 H 1.08999 * 109.48544 * 174.59781 * 18 17 6 46 46 H 0.96998 * 119.99713 * 334.97182 * 21 19 3 47 47 H 0.96993 * 120.00063 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6046 1.9822 0.8411 5 6 1.6384 2.1276 -1.3101 6 7 2.2449 3.4652 -1.3495 7 6 1.4855 4.5574 -1.5662 8 8 0.2882 4.4404 -1.7397 9 6 2.1092 5.8985 -1.5930 10 6 1.3330 7.0389 -1.3555 11 6 1.9631 8.2711 -1.3867 12 6 3.3285 8.3016 -1.6627 13 8 3.9848 9.4865 -1.7087 14 6 5.3836 9.4425 -1.9975 15 7 3.9856 7.1698 -1.8808 16 7 3.4059 6.0251 -1.8474 17 6 3.6950 3.5895 -1.1485 18 6 4.0732 2.8884 0.1599 19 6 3.5651 1.4451 0.1257 20 1 4.0008 0.9268 -0.7285 21 7 3.9542 0.7614 1.3617 22 6 5.1921 0.1852 1.4649 23 1 5.8819 0.2351 0.6353 24 6 5.5609 -0.4622 2.6361 25 7 4.7204 -0.5226 3.6473 26 14 7.2493 -1.2488 2.7767 27 1 7.3954 -1.8713 4.1170 28 1 7.3990 -2.2902 1.7287 29 1 8.2956 -0.2107 2.5959 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.9964 1.5390 -2.1548 36 1 0.5529 2.2145 -1.3592 37 1 0.2756 6.9596 -1.1503 38 1 1.4116 9.1821 -1.2069 39 1 5.5387 8.9837 -2.9741 40 1 5.7853 10.4558 -2.0039 41 1 5.8939 8.8546 -1.2347 42 1 4.2207 3.1203 -1.9801 43 1 3.9670 4.6436 -1.0925 44 1 3.6185 3.4143 0.9994 45 1 5.1573 2.8898 0.2730 46 1 3.3348 0.7169 2.1068 47 1 4.9780 -0.9753 4.4656 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037960669.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:07 Heat of formation + Delta-G solvation = -9.202611 kcal Electronic energy + Delta-G solvation = -29366.522972 eV Core-core repulsion = 25357.388845 eV Total energy + Delta-G solvation = -4009.134127 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.63229 -41.18513 -39.61895 -39.04800 -36.29726 -35.36074 -34.41919 -33.48483 -33.08524 -31.09806 -30.04411 -28.61725 -27.28483 -26.04430 -25.38020 -24.75791 -24.27086 -22.26962 -21.68731 -20.79629 -19.75563 -19.30568 -19.04161 -18.20961 -17.57629 -17.26822 -16.79121 -16.47581 -15.94544 -15.70359 -15.65045 -15.52460 -15.24089 -15.10829 -14.77412 -14.72594 -14.60129 -14.40411 -13.94129 -13.74402 -13.51281 -13.08827 -12.92132 -12.82098 -12.78194 -12.67849 -12.50596 -12.40766 -12.20030 -12.02412 -11.81985 -11.61001 -11.50786 -11.44314 -11.17267 -11.09597 -10.93644 -10.61248 -10.26584 -9.73677 -8.94024 -7.90088 -5.17459 -0.63455 -0.40791 1.44751 1.48747 1.50841 1.56642 1.66528 1.85184 2.37686 2.58565 2.72048 3.05718 3.38722 3.43093 3.71690 3.77170 3.79701 3.80227 4.00617 4.14431 4.23977 4.32869 4.34786 4.38616 4.38848 4.44838 4.52142 4.64477 4.69964 4.73605 4.79003 4.79868 4.86564 4.87964 5.01357 5.05997 5.11762 5.19406 5.31305 5.36964 5.48525 5.51901 5.58304 5.66072 5.84364 6.23165 6.31394 6.84223 7.28248 7.37947 8.13784 8.37719 9.33206 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011701 B = 0.003245 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.368357 B = 8626.965587 C =10558.827371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 C -0.092 4.092 4 H 0.054 0.946 5 C 0.123 3.877 6 N -0.585 5.585 7 C 0.577 3.423 8 O -0.559 6.559 9 C -0.019 4.019 10 C -0.031 4.031 11 C -0.120 4.120 12 C 0.272 3.728 13 O -0.297 6.297 14 C 0.026 3.974 15 N -0.323 5.323 16 N -0.179 5.179 17 C 0.093 3.907 18 C -0.140 4.140 19 C 0.179 3.821 20 H 0.048 0.952 21 N -0.730 5.730 22 C -0.232 4.232 23 H 0.076 0.924 24 C -0.075 4.075 25 N -0.970 5.970 26 Si 0.967 3.033 27 H -0.299 1.299 28 H -0.278 1.278 29 H -0.280 1.280 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.047 0.953 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.188 0.812 38 H 0.202 0.798 39 H 0.063 0.937 40 H 0.133 0.867 41 H 0.060 0.940 42 H 0.081 0.919 43 H 0.130 0.870 44 H 0.040 0.960 45 H 0.062 0.938 46 H 0.371 0.629 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.241 19.816 -13.908 25.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.112 4.112 4 H 0.073 0.927 5 C 0.001 3.999 6 N -0.314 5.314 7 C 0.363 3.637 8 O -0.437 6.437 9 C -0.167 4.167 10 C -0.059 4.059 11 C -0.149 4.149 12 C 0.088 3.912 13 O -0.200 6.200 14 C -0.068 4.068 15 N -0.181 5.181 16 N -0.027 5.027 17 C -0.030 4.030 18 C -0.181 4.181 19 C 0.070 3.930 20 H 0.066 0.934 21 N -0.369 5.369 22 C -0.364 4.364 23 H 0.093 0.907 24 C -0.267 4.267 25 N -0.621 5.621 26 Si 0.797 3.203 27 H -0.226 1.226 28 H -0.205 1.205 29 H -0.206 1.206 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.104 0.896 36 H 0.116 0.884 37 H 0.205 0.795 38 H 0.219 0.781 39 H 0.082 0.918 40 H 0.151 0.849 41 H 0.078 0.922 42 H 0.099 0.901 43 H 0.147 0.853 44 H 0.059 0.941 45 H 0.080 0.920 46 H 0.203 0.797 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.318 19.301 -14.368 24.642 hybrid contribution -0.010 -0.249 1.243 1.268 sum -5.329 19.052 -13.125 23.741 Atomic orbital electron populations 1.21780 0.94622 1.01989 1.01877 1.21351 0.96248 0.94858 1.02010 1.21626 0.95571 0.96738 0.97261 0.92725 1.21806 0.99776 0.81042 0.97267 1.48085 1.09319 1.06410 1.67623 1.17695 0.85637 0.83298 0.77076 1.90764 1.14577 1.86129 1.52247 1.22631 0.92916 0.96112 1.05052 1.22489 1.03134 0.89411 0.90852 1.21922 0.91394 1.01083 1.00513 1.21940 0.91763 0.87223 0.90314 1.86233 1.26311 1.23476 1.83982 1.23307 0.75964 1.05720 1.01803 1.73153 1.31715 0.94666 1.18546 1.72911 1.08027 1.14600 1.07143 1.22712 0.78277 1.04966 0.97047 1.22486 1.01024 0.97932 0.96641 1.20434 0.92650 0.90914 0.89005 0.93429 1.42558 1.15457 1.64924 1.13915 1.19558 0.92638 1.25831 0.98389 0.90659 1.25465 1.01555 1.03180 0.96487 1.69812 1.37070 1.50094 1.05158 0.85300 0.80376 0.78419 0.76212 1.22572 1.20468 1.20604 0.91465 0.92110 0.93485 0.91642 0.93460 0.89606 0.88441 0.79489 0.78050 0.91783 0.84893 0.92158 0.90072 0.85317 0.94149 0.91962 0.79724 0.94267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 9.67 71.98 0.70 -3.14 16 2 C -0.11 -3.43 5.31 30.59 0.16 -3.27 16 3 C -0.09 -3.03 1.92 -10.72 -0.02 -3.05 16 4 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 5 C 0.12 3.46 5.33 86.36 0.46 3.92 16 6 N -0.58 -16.86 2.97 -822.22 -2.44 -19.30 16 7 C 0.58 16.51 7.61 86.81 0.66 17.17 16 8 O -0.56 -17.71 16.01 -3.85 -0.06 -17.77 16 9 C -0.02 -0.46 6.52 42.00 0.27 -0.18 16 10 C -0.03 -0.54 9.72 22.74 0.22 -0.32 16 11 C -0.12 -1.66 10.14 22.58 0.23 -1.44 16 12 C 0.27 5.06 7.57 84.83 0.64 5.70 16 13 O -0.30 -4.64 10.48 -88.24 -0.92 -5.56 16 14 C 0.03 0.30 10.39 113.37 1.18 1.48 16 15 N -0.32 -7.60 10.40 -170.01 -1.77 -9.37 16 16 N -0.18 -4.61 7.58 -48.51 -0.37 -4.98 16 17 C 0.09 2.71 6.01 86.36 0.52 3.23 16 18 C -0.14 -4.99 5.66 30.67 0.17 -4.82 16 19 C 0.18 6.91 2.19 45.02 0.10 7.01 16 20 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 21 N -0.73 -36.06 4.33 -322.80 -1.40 -37.46 16 22 C -0.23 -12.66 9.93 84.03 0.83 -11.83 16 23 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 24 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 25 N -0.97 -59.34 13.06 21.65 0.28 -59.05 16 26 Si 0.97 46.11 29.55 68.60 2.03 48.14 16 27 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 28 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 29 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 30 H 0.07 1.55 6.70 -2.39 -0.02 1.53 16 31 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.05 1.89 7.21 -2.39 -0.02 1.87 16 35 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.10 2.70 5.73 -2.38 -0.01 2.68 16 37 H 0.19 2.47 7.86 -2.91 -0.02 2.45 16 38 H 0.20 1.18 8.06 -2.91 -0.02 1.15 16 39 H 0.06 0.77 8.11 -2.38 -0.02 0.75 16 40 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.06 0.79 8.11 -2.39 -0.02 0.77 16 42 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.13 3.72 3.99 -86.24 -0.34 3.37 16 44 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 46 H 0.37 20.06 7.51 -92.71 -0.70 19.36 16 47 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -69.33 379.97 1.90 -67.42 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: -0.04 Total: 31.27 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: 6.60 Total: 6.66 kcal Atomic # 7 Polarization: -124.47 SS G_CDS: -5.69 Total: -130.17 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.99 Total: -23.33 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -69.33 1.90 -67.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037960669.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.221 kcal (2) G-P(sol) polarization free energy of solvation -69.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds