Wall clock time and date at job start Tue Mar 31 2020 19:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47437 * 2 1 4 4 H 1.08999 * 109.51754 * 305.08103 * 3 2 1 5 5 C 1.53193 * 109.49448 * 65.15723 * 3 2 1 6 6 N 1.46924 * 108.77051 * 174.58838 * 5 3 2 7 7 C 1.34781 * 120.62568 * 126.41990 * 6 5 3 8 8 O 1.21575 * 120.00474 * 354.15212 * 7 6 5 9 9 C 1.47629 * 119.99659 * 174.15973 * 7 6 5 10 10 C 1.40058 * 120.88400 * 319.81944 * 9 7 6 11 11 N 1.32014 * 118.98860 * 179.71882 * 10 9 7 12 12 C 1.32470 * 120.91486 * 0.56686 * 11 10 9 13 13 O 1.35289 * 119.02025 * 179.72293 * 12 11 10 14 14 C 1.42898 * 117.00181 * 359.97438 * 13 12 11 15 15 N 1.32469 * 121.95829 * 359.70313 * 12 11 10 16 16 C 1.32009 * 120.91294 * 0.02562 * 15 12 11 17 17 C 1.46928 * 118.74295 * 306.39098 * 6 5 3 18 18 C 1.53190 * 108.77171 * 53.61218 * 17 6 5 19 19 C 1.53037 * 109.49819 * 185.00074 * 3 2 1 20 20 H 1.09004 * 109.44387 * 298.69358 * 19 3 2 21 21 N 1.46493 * 109.46063 * 58.66301 * 19 3 2 22 22 C 1.36940 * 119.99720 * 205.06558 * 21 19 3 23 23 H 1.08001 * 120.00361 * 0.02562 * 22 21 19 24 24 C 1.38813 * 119.99940 * 179.97438 * 22 21 19 25 25 N 1.31615 * 120.00183 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00097 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47237 * 89.99797 * 26 24 22 28 28 H 1.48507 * 109.47113 * 330.00281 * 26 24 22 29 29 H 1.48501 * 109.47291 * 210.00578 * 26 24 22 30 30 H 1.09000 * 109.47453 * 179.97438 * 1 2 3 31 31 H 1.08989 * 109.47236 * 300.00388 * 1 2 3 32 32 H 1.09004 * 109.46636 * 59.99957 * 1 2 3 33 33 H 1.09003 * 109.47186 * 239.99676 * 2 1 3 34 34 H 1.08998 * 109.47316 * 119.99974 * 2 1 3 35 35 H 1.08995 * 109.58308 * 54.80509 * 5 3 2 36 36 H 1.09002 * 109.70828 * 294.44800 * 5 3 2 37 37 H 1.08004 * 120.50641 * 359.97438 * 10 9 7 38 38 H 1.08998 * 109.47337 * 299.99428 * 14 13 12 39 39 H 1.09004 * 109.47611 * 59.99988 * 14 13 12 40 40 H 1.09007 * 109.47194 * 179.97438 * 14 13 12 41 41 H 1.08004 * 120.50706 * 180.02562 * 16 15 12 42 42 H 1.08998 * 109.58453 * 293.82362 * 17 6 5 43 43 H 1.08996 * 109.58846 * 173.39915 * 17 6 5 44 44 H 1.09006 * 109.49524 * 185.41618 * 18 17 6 45 45 H 1.08997 * 109.52917 * 65.33141 * 18 17 6 46 46 H 0.96995 * 120.00523 * 25.06782 * 21 19 3 47 47 H 0.97000 * 119.99878 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6048 1.9827 -0.8407 5 6 1.6385 2.1268 1.3105 6 7 2.2451 3.4643 1.3506 7 6 1.4857 4.5564 1.5681 8 8 0.2758 4.4536 1.6274 9 6 2.1233 5.8775 1.7342 10 6 3.3078 6.0170 2.4685 11 7 3.8488 7.2151 2.5885 12 6 3.2810 8.2768 2.0358 13 8 3.8655 9.4874 2.1877 14 6 5.0747 9.5333 2.9478 15 7 2.1582 8.1882 1.3386 16 6 1.5564 7.0258 1.1670 17 6 3.6953 3.5888 1.1498 18 6 4.0737 2.8881 -0.1588 19 6 3.5653 1.4450 -0.1258 20 1 4.0006 0.9261 0.7283 21 7 3.9542 0.7620 -1.3620 22 6 5.1918 0.1851 -1.4652 23 1 5.8810 0.2332 -0.6351 24 6 5.5601 -0.4626 -2.6365 25 7 4.7201 -0.5217 -3.6480 26 14 7.2481 -1.2502 -2.7771 27 1 7.1771 -2.6592 -2.3136 28 1 8.2157 -0.5007 -1.9360 29 1 7.6936 -1.2167 -4.1933 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.9965 1.5377 2.1548 36 1 0.5533 2.2160 1.3611 37 1 3.7737 5.1567 2.9260 38 1 4.8828 9.1720 3.9581 39 1 5.8265 8.9026 2.4731 40 1 5.4376 10.5602 2.9916 41 1 0.6413 6.9611 0.5969 42 1 4.2209 3.1189 1.9812 43 1 3.9671 4.6427 1.0919 44 1 5.1579 2.8894 -0.2718 45 1 3.6198 3.4145 -0.9984 46 1 3.3351 0.7184 -2.1075 47 1 3.8434 -0.1130 -3.5748 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037962180.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:01 Heat of formation + Delta-G solvation = -0.472945 kcal Electronic energy + Delta-G solvation = -29358.550718 eV Core-core repulsion = 25349.795138 eV Total energy + Delta-G solvation = -4008.755580 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.81672 -40.22323 -38.68588 -37.84271 -35.17964 -34.30463 -34.01543 -32.12614 -31.84266 -29.54572 -28.78692 -27.92718 -25.59885 -25.12085 -24.09287 -23.84977 -22.86884 -21.07085 -20.38247 -19.48464 -19.24958 -18.56072 -17.35802 -17.29105 -16.81919 -16.31337 -15.63803 -15.30937 -15.04422 -14.82441 -14.57924 -14.23954 -14.11649 -13.95532 -13.67028 -13.58554 -13.46454 -13.21884 -12.91872 -12.43408 -12.35515 -12.17653 -12.06022 -11.78582 -11.62199 -11.44095 -11.32213 -10.99521 -10.77717 -10.66337 -10.38945 -10.31471 -10.09460 -10.01464 -9.93055 -9.67262 -9.39469 -9.22696 -8.96047 -8.66538 -7.09390 -6.14975 -3.15737 0.25596 0.60650 2.12588 2.48216 2.82386 3.35664 3.47542 3.51755 3.52221 3.65807 4.04556 4.20654 4.28074 4.58888 4.60924 4.80479 4.83179 4.87038 5.05541 5.07526 5.13030 5.16259 5.25581 5.30293 5.37532 5.51057 5.52701 5.58893 5.59820 5.74936 5.84997 5.97290 6.00498 6.09740 6.18556 6.22189 6.22782 6.31327 6.38886 6.51002 6.63546 6.67234 6.78068 6.89640 7.24956 7.58213 7.74943 7.94605 8.70293 9.16395 10.02867 10.17873 11.33087 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012222 B = 0.003121 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.454186 B = 8969.717771 C =10717.506289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.106 4.106 4 H 0.070 0.930 5 C 0.120 3.880 6 N -0.598 5.598 7 C 0.574 3.426 8 O -0.536 6.536 9 C -0.276 4.276 10 C 0.223 3.777 11 N -0.568 5.568 12 C 0.513 3.487 13 O -0.286 6.286 14 C 0.042 3.958 15 N -0.524 5.524 16 C 0.244 3.756 17 C 0.099 3.901 18 C -0.151 4.151 19 C 0.190 3.810 20 H 0.050 0.950 21 N -0.731 5.731 22 C -0.331 4.331 23 H 0.064 0.936 24 C -0.043 4.043 25 N -0.943 5.943 26 Si 1.080 2.920 27 H -0.296 1.296 28 H -0.295 1.295 29 H -0.288 1.288 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.181 0.819 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.106 0.894 41 H 0.187 0.813 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.059 0.941 46 H 0.367 0.633 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.247 13.960 14.825 20.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.088 0.912 5 C -0.002 4.002 6 N -0.330 5.330 7 C 0.360 3.640 8 O -0.414 6.414 9 C -0.284 4.284 10 C 0.057 3.943 11 N -0.297 5.297 12 C 0.212 3.788 13 O -0.186 6.186 14 C -0.054 4.054 15 N -0.249 5.249 16 C 0.077 3.923 17 C -0.024 4.024 18 C -0.192 4.192 19 C 0.079 3.921 20 H 0.068 0.932 21 N -0.373 5.373 22 C -0.462 4.462 23 H 0.082 0.918 24 C -0.241 4.241 25 N -0.588 5.588 26 Si 0.912 3.088 27 H -0.223 1.223 28 H -0.222 1.222 29 H -0.214 1.214 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.112 0.888 37 H 0.198 0.802 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.124 0.876 41 H 0.204 0.796 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.077 0.923 46 H 0.201 0.799 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.240 14.284 14.060 20.168 hybrid contribution -1.147 0.020 0.788 1.392 sum -3.388 14.305 14.848 20.894 Atomic orbital electron populations 1.21847 0.96588 1.01191 1.01421 1.21436 0.94535 0.95530 1.03384 1.21810 0.97654 0.96354 0.96812 0.91192 1.21809 0.99630 0.80763 0.97970 1.48067 1.08611 1.06704 1.69626 1.17652 0.86355 0.82988 0.76957 1.90795 1.13326 1.85704 1.51532 1.21558 1.00938 0.97132 1.08760 1.23355 0.88296 0.93984 0.88697 1.68119 1.35684 0.99796 1.26150 1.20962 0.86561 0.85036 0.86283 1.86075 1.40151 1.23178 1.69172 1.23083 0.83046 1.03774 0.95455 1.67705 1.09340 1.28373 1.19482 1.23285 0.95736 0.84090 0.89196 1.22161 0.79398 1.01042 0.99797 1.22678 1.02417 0.99252 0.94860 1.20114 0.90651 0.90334 0.90998 0.93204 1.42413 1.16584 1.65580 1.12681 1.20026 0.92472 1.32145 1.01582 0.91775 1.25723 1.05792 1.00201 0.92393 1.70851 1.08371 1.47472 1.32105 0.83224 0.74257 0.75734 0.75631 1.22334 1.22201 1.21447 0.93049 0.93054 0.92968 0.90209 0.92276 0.91223 0.88761 0.80227 0.91618 0.91466 0.87600 0.79618 0.90812 0.90629 0.90366 0.92270 0.79948 0.93310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.68 37.16 0.36 -1.62 16 2 C -0.11 -1.68 5.31 -26.73 -0.14 -1.82 16 3 C -0.11 -1.62 1.92 -90.50 -0.17 -1.79 16 4 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 5 C 0.12 1.57 5.33 -3.71 -0.02 1.55 16 6 N -0.60 -7.52 2.97 -173.97 -0.52 -8.04 16 7 C 0.57 7.55 7.35 -12.43 -0.09 7.46 16 8 O -0.54 -8.52 16.37 5.30 0.09 -8.44 16 9 C -0.28 -3.14 5.14 -104.70 -0.54 -3.67 16 10 C 0.22 2.24 8.68 -16.79 -0.15 2.10 16 11 N -0.57 -6.21 9.19 -14.39 -0.13 -6.35 16 12 C 0.51 6.20 8.48 -90.99 -0.77 5.43 16 13 O -0.29 -3.12 10.55 -17.56 -0.19 -3.31 16 14 C 0.04 0.28 10.35 101.05 1.05 1.33 16 15 N -0.52 -6.63 10.45 -14.39 -0.15 -6.78 16 16 C 0.24 2.78 10.96 -16.79 -0.18 2.59 16 17 C 0.10 1.16 4.94 -3.71 -0.02 1.14 16 18 C -0.15 -2.38 5.66 -26.61 -0.15 -2.53 16 19 C 0.19 3.37 2.19 -67.89 -0.15 3.22 16 20 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 21 N -0.73 -16.80 4.33 -53.39 -0.23 -17.03 16 22 C -0.33 -8.71 9.93 -15.06 -0.15 -8.86 16 23 H 0.06 1.66 7.83 -52.49 -0.41 1.25 16 24 C -0.04 -1.20 5.50 -17.43 -0.10 -1.30 16 25 N -0.94 -28.22 13.70 55.49 0.76 -27.46 16 26 Si 1.08 25.12 29.92 -169.99 -5.09 20.03 16 27 H -0.30 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.30 -6.45 7.11 56.52 0.40 -6.05 16 29 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.60 6.70 -51.94 -0.35 0.26 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.08 1.46 7.22 -51.93 -0.37 1.09 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.09 1.28 5.72 -51.93 -0.30 0.98 16 37 H 0.18 1.38 6.67 -52.48 -0.35 1.03 16 38 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 39 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 40 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.19 1.78 8.06 -52.48 -0.42 1.36 16 42 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 43 H 0.08 0.80 4.74 -51.93 -0.25 0.55 16 44 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.37 8.94 6.35 -40.82 -0.26 8.68 16 47 H 0.26 7.53 6.77 -40.82 -0.28 7.26 16 LS Contribution 377.78 15.07 5.69 5.69 Total: -1.00 -32.58 377.78 -7.83 -40.41 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -6.84 Total: 8.04 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -1.22 Total: 3.23 kcal Atomic # 7 Polarization: -65.39 SS G_CDS: -0.27 Total: -65.66 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: -0.10 Total: -11.74 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -5.09 Total: 20.03 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.58 -7.83 -40.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037962180.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.934 kcal (2) G-P(sol) polarization free energy of solvation -32.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds