Wall clock time and date at job start Tue Mar 31 2020 19:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47627 * 2 1 4 4 H 1.09008 * 109.49581 * 54.93027 * 3 2 1 5 5 C 1.53199 * 109.49394 * 294.83876 * 3 2 1 6 6 N 1.46929 * 108.77054 * 185.40884 * 5 3 2 7 7 C 1.34779 * 120.62893 * 233.62332 * 6 5 3 8 8 O 1.21582 * 119.99689 * 356.61441 * 7 6 5 9 9 C 1.47627 * 119.99783 * 176.60619 * 7 6 5 10 10 C 1.40053 * 120.88528 * 49.43334 * 9 7 6 11 11 N 1.32017 * 118.99256 * 179.71316 * 10 9 7 12 12 C 1.32476 * 120.90975 * 0.57305 * 11 10 9 13 13 O 1.35291 * 119.01862 * 179.67930 * 12 11 10 14 14 C 1.42901 * 117.00240 * 0.02562 * 13 12 11 15 15 N 1.32465 * 121.95775 * 359.69825 * 12 11 10 16 16 C 1.32014 * 120.91821 * 0.02562 * 15 12 11 17 17 C 1.46927 * 118.73842 * 53.61145 * 6 5 3 18 18 C 1.53185 * 108.77281 * 306.38383 * 17 6 5 19 19 C 1.53033 * 109.50485 * 174.99722 * 3 2 1 20 20 H 1.08998 * 109.45937 * 61.30518 * 19 3 2 21 21 N 1.46499 * 109.45778 * 301.34038 * 19 3 2 22 22 C 1.36937 * 120.00184 * 154.99959 * 21 19 3 23 23 H 1.08004 * 119.99810 * 359.97438 * 22 21 19 24 24 C 1.38813 * 120.00602 * 179.97438 * 22 21 19 25 25 N 1.31618 * 119.99385 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00373 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47045 * 270.00251 * 26 24 22 28 28 H 1.48494 * 109.47177 * 30.00142 * 26 24 22 29 29 H 1.48501 * 109.46917 * 150.00140 * 26 24 22 30 30 H 1.08997 * 109.47444 * 300.00351 * 1 2 3 31 31 H 1.09002 * 109.47024 * 60.00208 * 1 2 3 32 32 H 1.09000 * 109.47356 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47444 * 239.99649 * 2 1 3 34 34 H 1.09002 * 109.47024 * 119.99792 * 2 1 3 35 35 H 1.08994 * 109.58429 * 305.19483 * 5 3 2 36 36 H 1.08998 * 109.58840 * 65.62149 * 5 3 2 37 37 H 1.08000 * 120.50224 * 359.97039 * 10 9 7 38 38 H 1.08997 * 109.47515 * 59.99431 * 14 13 12 39 39 H 1.08999 * 109.47584 * 180.02562 * 14 13 12 40 40 H 1.09007 * 109.46784 * 300.00077 * 14 13 12 41 41 H 1.08002 * 120.50703 * 179.97438 * 16 15 12 42 42 H 1.08994 * 109.58853 * 66.17357 * 17 6 5 43 43 H 1.09007 * 109.58311 * 186.45640 * 17 6 5 44 44 H 1.09005 * 109.50175 * 294.68511 * 18 17 6 45 45 H 1.09008 * 109.49732 * 174.58989 * 18 17 6 46 46 H 0.97000 * 120.00185 * 334.99044 * 21 19 3 47 47 H 0.96998 * 120.00194 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6047 1.9823 0.8410 5 6 1.6385 2.1267 -1.3106 6 7 2.2452 3.4643 -1.3507 7 6 1.4857 4.5565 -1.5674 8 8 0.2972 4.4354 -1.7931 9 6 2.0971 5.8997 -1.5305 10 6 3.2658 6.1777 -2.2505 11 7 3.7774 7.3934 -2.1953 12 6 3.2071 8.3392 -1.4636 13 8 3.7676 9.5701 -1.4296 14 6 4.9554 9.7637 -2.2001 15 7 2.1047 8.1154 -0.7641 16 6 1.5271 6.9283 -0.7697 17 6 3.6953 3.5886 -1.1498 18 6 4.0736 2.8881 0.1588 19 6 3.5652 1.4450 0.1258 20 1 4.0008 0.9262 -0.7281 21 7 3.9540 0.7620 1.3621 22 6 5.1921 0.1863 1.4660 23 1 5.8818 0.2354 0.6363 24 6 5.5609 -0.4605 2.6376 25 7 4.7202 -0.5207 3.6485 26 14 7.2496 -1.2464 2.7790 27 1 7.1799 -2.6557 2.3161 28 1 8.2166 -0.4965 1.9379 29 1 7.6945 -1.2119 4.1953 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 1.9965 1.5376 -2.1549 36 1 0.5533 2.2160 -1.3587 37 1 3.7389 5.4103 -2.8451 38 1 4.7428 9.5676 -3.2510 39 1 5.3002 10.7912 -2.0843 40 1 5.7296 9.0796 -1.8523 41 1 0.6287 6.7531 -0.1965 42 1 4.2210 3.1188 -1.9810 43 1 3.9674 4.6428 -1.0944 44 1 3.6192 3.4148 0.9981 45 1 5.1578 2.8893 0.2720 46 1 3.3345 0.7177 2.1072 47 1 4.9776 -0.9730 4.4671 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037962183.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:05 Heat of formation + Delta-G solvation = -1.312602 kcal Electronic energy + Delta-G solvation = -29340.983955 eV Core-core repulsion = 25332.191965 eV Total energy + Delta-G solvation = -4008.791991 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.76785 -40.16273 -38.63592 -37.77154 -35.02033 -34.22174 -33.85314 -32.06548 -31.74975 -29.60902 -28.83660 -27.92242 -25.66174 -25.08844 -24.20802 -23.79359 -22.78078 -20.93273 -20.30656 -19.39715 -19.22455 -18.50400 -17.35110 -17.11048 -16.77764 -16.23185 -15.62701 -15.20632 -14.98124 -14.79367 -14.44624 -14.22297 -13.98324 -13.96374 -13.76373 -13.39443 -13.29542 -13.08706 -12.76054 -12.39394 -12.30437 -12.07938 -12.03973 -11.71389 -11.59053 -11.35962 -11.27164 -10.98528 -10.89676 -10.76876 -10.43438 -10.25883 -10.20676 -10.01324 -9.78198 -9.66905 -9.63481 -9.33809 -8.95461 -8.62130 -7.02287 -5.82680 -3.11741 0.33512 0.64260 2.16647 2.47273 2.88209 3.37303 3.38688 3.44012 3.45869 3.56343 4.08221 4.24013 4.32649 4.52712 4.65573 4.84383 4.89165 4.90040 5.13631 5.14461 5.17728 5.23670 5.30057 5.36790 5.45085 5.54617 5.59768 5.61516 5.64102 5.81813 5.92592 6.04766 6.08459 6.23291 6.24388 6.28878 6.31751 6.39703 6.46702 6.59900 6.67653 6.75297 6.89667 6.97818 7.30236 7.62343 7.63464 7.98958 8.35339 9.46999 10.03749 10.38422 11.39622 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011805 B = 0.003183 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.388041 B = 8793.628537 C =10561.874403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.105 4.105 4 H 0.071 0.929 5 C 0.120 3.880 6 N -0.596 5.596 7 C 0.573 3.427 8 O -0.536 6.536 9 C -0.271 4.271 10 C 0.222 3.778 11 N -0.567 5.567 12 C 0.511 3.489 13 O -0.286 6.286 14 C 0.042 3.958 15 N -0.523 5.523 16 C 0.241 3.759 17 C 0.098 3.902 18 C -0.151 4.151 19 C 0.184 3.816 20 H 0.049 0.951 21 N -0.720 5.720 22 C -0.240 4.240 23 H 0.070 0.930 24 C -0.011 4.011 25 N -0.931 5.931 26 Si 0.905 3.095 27 H -0.290 1.290 28 H -0.282 1.282 29 H -0.292 1.292 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.180 0.820 38 H 0.065 0.935 39 H 0.105 0.895 40 H 0.066 0.934 41 H 0.186 0.814 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.060 0.940 45 H 0.077 0.923 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.614 14.077 -13.456 19.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.125 4.125 4 H 0.089 0.911 5 C -0.002 4.002 6 N -0.328 5.328 7 C 0.359 3.641 8 O -0.413 6.413 9 C -0.279 4.279 10 C 0.055 3.945 11 N -0.296 5.296 12 C 0.210 3.790 13 O -0.186 6.186 14 C -0.053 4.053 15 N -0.247 5.247 16 C 0.074 3.926 17 C -0.025 4.025 18 C -0.193 4.193 19 C 0.073 3.927 20 H 0.067 0.933 21 N -0.360 5.360 22 C -0.371 4.371 23 H 0.088 0.912 24 C -0.207 4.207 25 N -0.579 5.579 26 Si 0.736 3.264 27 H -0.217 1.217 28 H -0.208 1.208 29 H -0.218 1.218 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.197 0.803 38 H 0.083 0.917 39 H 0.124 0.876 40 H 0.085 0.915 41 H 0.203 0.797 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.078 0.922 45 H 0.095 0.905 46 H 0.218 0.782 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.637 15.181 -13.436 20.597 hybrid contribution 0.802 -1.303 0.329 1.565 sum -2.835 13.878 -13.107 19.299 Atomic orbital electron populations 1.21847 0.96751 1.01122 1.01325 1.21447 0.94413 0.95548 1.03560 1.21798 0.97688 0.96398 0.96619 0.91092 1.21832 0.99527 0.80757 0.98096 1.48100 1.08610 1.06685 1.69357 1.17659 0.86006 0.83200 0.77197 1.90802 1.14900 1.86327 1.49318 1.21549 1.01136 0.97941 1.07315 1.23249 0.88427 0.91940 0.90870 1.68107 1.35332 1.02468 1.23740 1.20933 0.86618 0.85398 0.86072 1.86074 1.42064 1.24083 1.66406 1.23073 0.83820 1.02939 0.95496 1.67686 1.09987 1.23744 1.23322 1.23238 0.95465 0.84203 0.89688 1.22144 0.79356 1.01072 0.99905 1.22697 1.02361 0.99375 0.94834 1.20179 0.90770 0.90385 0.91334 0.93317 1.42404 1.16480 1.64399 1.12695 1.19199 0.91788 1.27539 0.98600 0.91238 1.24728 0.98125 1.01468 0.96413 1.69654 1.35240 1.48221 1.04763 0.86233 0.84009 0.79344 0.76836 1.21732 1.20814 1.21836 0.92960 0.93183 0.93130 0.92395 0.89727 0.91245 0.88859 0.80321 0.91657 0.87643 0.91485 0.79738 0.90808 0.90751 0.92153 0.90450 0.78164 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.67 37.15 0.36 -1.63 16 2 C -0.11 -1.69 5.31 -26.74 -0.14 -1.83 16 3 C -0.11 -1.59 1.92 -90.50 -0.17 -1.76 16 4 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 5 C 0.12 1.56 5.32 -3.70 -0.02 1.54 16 6 N -0.60 -7.48 2.97 -173.96 -0.52 -8.00 16 7 C 0.57 7.54 7.29 -12.43 -0.09 7.45 16 8 O -0.54 -8.55 16.48 5.29 0.09 -8.46 16 9 C -0.27 -3.11 5.05 -104.70 -0.53 -3.63 16 10 C 0.22 2.24 8.66 -16.79 -0.15 2.09 16 11 N -0.57 -6.27 9.19 -14.39 -0.13 -6.40 16 12 C 0.51 6.27 8.48 -90.99 -0.77 5.50 16 13 O -0.29 -3.18 10.55 -17.56 -0.19 -3.37 16 14 C 0.04 0.29 10.35 101.05 1.05 1.34 16 15 N -0.52 -6.71 10.45 -14.39 -0.15 -6.86 16 16 C 0.24 2.78 11.05 -16.79 -0.19 2.59 16 17 C 0.10 1.15 5.38 -3.71 -0.02 1.13 16 18 C -0.15 -2.35 5.66 -26.62 -0.15 -2.50 16 19 C 0.18 3.22 2.19 -67.89 -0.15 3.07 16 20 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 21 N -0.72 -16.46 4.33 -53.39 -0.23 -16.69 16 22 C -0.24 -6.21 9.93 -15.06 -0.15 -6.36 16 23 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 24 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 25 N -0.93 -27.02 13.06 55.49 0.72 -26.30 16 26 Si 0.90 21.56 29.55 -169.99 -5.02 16.54 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 29 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.59 6.70 -51.93 -0.35 0.24 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 1.56 7.22 -51.93 -0.37 1.19 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.09 1.27 5.74 -51.93 -0.30 0.97 16 37 H 0.18 1.34 7.04 -52.49 -0.37 0.98 16 38 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 39 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.46 8.09 -51.92 -0.42 0.04 16 41 H 0.19 1.77 8.06 -52.49 -0.42 1.35 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.78 4.50 -51.93 -0.23 0.54 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.08 1.30 8.14 -51.92 -0.42 0.87 16 46 H 0.38 9.58 7.51 -40.82 -0.31 9.27 16 47 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 380.09 15.07 5.73 5.73 Total: -1.00 -31.56 380.09 -7.88 -39.44 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -6.96 Total: 7.77 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -1.22 Total: 6.60 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: -0.31 Total: -64.25 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: -0.10 Total: -11.83 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.56 -7.88 -39.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037962183.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.125 kcal (2) G-P(sol) polarization free energy of solvation -31.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds