Wall clock time and date at job start Tue Mar 31 2020 19:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47627 * 2 1 4 4 H 1.09008 * 109.49581 * 54.93027 * 3 2 1 5 5 C 1.53199 * 109.49394 * 294.83876 * 3 2 1 6 6 N 1.46929 * 108.77054 * 185.40884 * 5 3 2 7 7 C 1.34779 * 120.62893 * 233.62332 * 6 5 3 8 8 O 1.21582 * 119.99689 * 356.61441 * 7 6 5 9 9 C 1.47627 * 119.99783 * 176.60619 * 7 6 5 10 10 C 1.40053 * 120.88528 * 49.43334 * 9 7 6 11 11 N 1.32017 * 118.99256 * 179.71316 * 10 9 7 12 12 C 1.32476 * 120.90975 * 0.57305 * 11 10 9 13 13 O 1.35291 * 119.01862 * 179.67930 * 12 11 10 14 14 C 1.42901 * 117.00240 * 0.02562 * 13 12 11 15 15 N 1.32465 * 121.95775 * 359.69825 * 12 11 10 16 16 C 1.32014 * 120.91821 * 0.02562 * 15 12 11 17 17 C 1.46927 * 118.73842 * 53.61145 * 6 5 3 18 18 C 1.53185 * 108.77281 * 306.38383 * 17 6 5 19 19 C 1.53033 * 109.50485 * 174.99722 * 3 2 1 20 20 H 1.08998 * 109.45937 * 61.30518 * 19 3 2 21 21 N 1.46499 * 109.45778 * 301.34038 * 19 3 2 22 22 C 1.36937 * 120.00184 * 154.99959 * 21 19 3 23 23 H 1.08004 * 119.99810 * 359.97438 * 22 21 19 24 24 C 1.38813 * 120.00602 * 179.97438 * 22 21 19 25 25 N 1.31618 * 119.99385 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00373 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47045 * 270.00251 * 26 24 22 28 28 H 1.48494 * 109.47177 * 30.00142 * 26 24 22 29 29 H 1.48501 * 109.46917 * 150.00140 * 26 24 22 30 30 H 1.08997 * 109.47444 * 300.00351 * 1 2 3 31 31 H 1.09002 * 109.47024 * 60.00208 * 1 2 3 32 32 H 1.09000 * 109.47356 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47444 * 239.99649 * 2 1 3 34 34 H 1.09002 * 109.47024 * 119.99792 * 2 1 3 35 35 H 1.08994 * 109.58429 * 305.19483 * 5 3 2 36 36 H 1.08998 * 109.58840 * 65.62149 * 5 3 2 37 37 H 1.08000 * 120.50224 * 359.97039 * 10 9 7 38 38 H 1.08997 * 109.47515 * 59.99431 * 14 13 12 39 39 H 1.08999 * 109.47584 * 180.02562 * 14 13 12 40 40 H 1.09007 * 109.46784 * 300.00077 * 14 13 12 41 41 H 1.08002 * 120.50703 * 179.97438 * 16 15 12 42 42 H 1.08994 * 109.58853 * 66.17357 * 17 6 5 43 43 H 1.09007 * 109.58311 * 186.45640 * 17 6 5 44 44 H 1.09005 * 109.50175 * 294.68511 * 18 17 6 45 45 H 1.09008 * 109.49732 * 174.58989 * 18 17 6 46 46 H 0.97000 * 120.00185 * 334.99044 * 21 19 3 47 47 H 0.96998 * 120.00194 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6047 1.9823 0.8410 5 6 1.6385 2.1267 -1.3106 6 7 2.2452 3.4643 -1.3507 7 6 1.4857 4.5565 -1.5674 8 8 0.2972 4.4354 -1.7931 9 6 2.0971 5.8997 -1.5305 10 6 3.2658 6.1777 -2.2505 11 7 3.7774 7.3934 -2.1953 12 6 3.2071 8.3392 -1.4636 13 8 3.7676 9.5701 -1.4296 14 6 4.9554 9.7637 -2.2001 15 7 2.1047 8.1154 -0.7641 16 6 1.5271 6.9283 -0.7697 17 6 3.6953 3.5886 -1.1498 18 6 4.0736 2.8881 0.1588 19 6 3.5652 1.4450 0.1258 20 1 4.0008 0.9262 -0.7281 21 7 3.9540 0.7620 1.3621 22 6 5.1921 0.1863 1.4660 23 1 5.8818 0.2354 0.6363 24 6 5.5609 -0.4605 2.6376 25 7 4.7202 -0.5207 3.6485 26 14 7.2496 -1.2464 2.7790 27 1 7.1799 -2.6557 2.3161 28 1 8.2166 -0.4965 1.9379 29 1 7.6945 -1.2119 4.1953 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 1.9965 1.5376 -2.1549 36 1 0.5533 2.2160 -1.3587 37 1 3.7389 5.4103 -2.8451 38 1 4.7428 9.5676 -3.2510 39 1 5.3002 10.7912 -2.0843 40 1 5.7296 9.0796 -1.8523 41 1 0.6287 6.7531 -0.1965 42 1 4.2210 3.1188 -1.9810 43 1 3.9674 4.6428 -1.0944 44 1 3.6192 3.4148 0.9981 45 1 5.1578 2.8893 0.2720 46 1 3.3345 0.7177 2.1072 47 1 4.9776 -0.9730 4.4671 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037962183.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:04 Heat of formation + Delta-G solvation = -24.423834 kcal Electronic energy + Delta-G solvation = -29341.986134 eV Core-core repulsion = 25332.191965 eV Total energy + Delta-G solvation = -4009.794169 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.64287 -41.21139 -39.54117 -38.93236 -36.30301 -35.44132 -35.03443 -33.45983 -32.91337 -31.09638 -30.01621 -28.64237 -26.92460 -26.00271 -25.51397 -24.86466 -24.18789 -22.23272 -21.45105 -20.60873 -20.01636 -19.38203 -19.05456 -18.29601 -17.60518 -17.29850 -16.79008 -16.40168 -16.15724 -15.68654 -15.61125 -15.50122 -15.36023 -14.95330 -14.73197 -14.71992 -14.50203 -14.46011 -13.90341 -13.61756 -13.23277 -13.14692 -12.96744 -12.91808 -12.83484 -12.68758 -12.50600 -12.36491 -12.18817 -12.13333 -12.01306 -11.81417 -11.55942 -11.48647 -11.10325 -11.06549 -10.81143 -10.49684 -10.20369 -9.71716 -8.93858 -7.89404 -5.16488 -0.54487 -0.18646 1.40194 1.46458 1.49961 1.50301 1.58249 1.87936 2.49290 2.59430 2.77646 3.21730 3.35997 3.44435 3.51747 3.76597 3.81200 3.84993 3.99572 4.06183 4.21254 4.35034 4.35537 4.39011 4.44609 4.48871 4.51960 4.66377 4.68728 4.73484 4.82059 4.83085 4.85563 4.89964 5.04262 5.06982 5.18405 5.31903 5.38389 5.42848 5.48142 5.54022 5.60692 5.67333 5.88503 6.26678 6.32330 6.77573 6.95813 7.38901 8.15877 8.37940 9.34157 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011805 B = 0.003183 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.388041 B = 8793.628537 C =10561.874403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.094 4.094 4 H 0.052 0.948 5 C 0.127 3.873 6 N -0.594 5.594 7 C 0.580 3.420 8 O -0.565 6.565 9 C -0.279 4.279 10 C 0.230 3.770 11 N -0.565 5.565 12 C 0.502 3.498 13 O -0.301 6.301 14 C 0.037 3.963 15 N -0.546 5.546 16 C 0.238 3.762 17 C 0.109 3.891 18 C -0.143 4.143 19 C 0.179 3.821 20 H 0.054 0.946 21 N -0.731 5.731 22 C -0.228 4.228 23 H 0.079 0.921 24 C -0.077 4.077 25 N -0.971 5.971 26 Si 0.965 3.035 27 H -0.290 1.290 28 H -0.267 1.267 29 H -0.303 1.303 30 H 0.044 0.956 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.044 0.956 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.211 0.789 38 H 0.070 0.930 39 H 0.132 0.868 40 H 0.068 0.932 41 H 0.196 0.804 42 H 0.104 0.896 43 H 0.091 0.909 44 H 0.040 0.960 45 H 0.066 0.934 46 H 0.370 0.630 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.714 14.882 -16.091 22.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C -0.114 4.114 4 H 0.070 0.930 5 C 0.005 3.995 6 N -0.325 5.325 7 C 0.368 3.632 8 O -0.445 6.445 9 C -0.287 4.287 10 C 0.063 3.937 11 N -0.295 5.295 12 C 0.201 3.799 13 O -0.202 6.202 14 C -0.058 4.058 15 N -0.272 5.272 16 C 0.071 3.929 17 C -0.014 4.014 18 C -0.184 4.184 19 C 0.070 3.930 20 H 0.072 0.928 21 N -0.370 5.370 22 C -0.360 4.360 23 H 0.097 0.903 24 C -0.269 4.269 25 N -0.622 5.622 26 Si 0.795 3.205 27 H -0.218 1.218 28 H -0.192 1.192 29 H -0.230 1.230 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.227 0.773 38 H 0.089 0.911 39 H 0.150 0.850 40 H 0.086 0.914 41 H 0.213 0.787 42 H 0.122 0.878 43 H 0.109 0.891 44 H 0.059 0.941 45 H 0.085 0.915 46 H 0.202 0.798 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.714 16.025 -16.132 22.900 hybrid contribution 0.512 -1.480 1.090 1.908 sum -2.203 14.545 -15.041 21.039 Atomic orbital electron populations 1.21785 0.94926 1.01862 1.01804 1.21348 0.96004 0.95146 1.02004 1.21646 0.95744 0.96538 0.97463 0.92986 1.21747 0.99615 0.81054 0.97121 1.48103 1.08943 1.06441 1.69017 1.17768 0.85495 0.83620 0.76362 1.90792 1.16209 1.86741 1.50711 1.21423 1.01969 0.96998 1.08335 1.23727 0.87661 0.92192 0.90086 1.68210 1.35147 1.02564 1.23554 1.21185 0.86637 0.86043 0.86037 1.86072 1.43321 1.23707 1.67060 1.23367 0.82450 1.04642 0.95324 1.67697 1.10805 1.24355 1.24317 1.23455 0.95711 0.84001 0.89687 1.22148 0.78914 1.01902 0.98449 1.22484 1.01348 0.97945 0.96640 1.20436 0.92469 0.90999 0.89066 0.92837 1.42602 1.15427 1.64933 1.14036 1.19600 0.92601 1.25517 0.98236 0.90268 1.25460 1.01422 1.03346 0.96649 1.69816 1.37045 1.50180 1.05190 0.85255 0.80631 0.78444 0.76156 1.21786 1.19223 1.23002 0.93705 0.91418 0.92313 0.91422 0.93684 0.89069 0.88975 0.77299 0.91142 0.84980 0.91371 0.78740 0.87783 0.89059 0.94111 0.91498 0.79850 0.94386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.67 71.98 0.70 -2.96 16 2 C -0.11 -3.19 5.31 30.59 0.16 -3.03 16 3 C -0.09 -2.77 1.92 -10.72 -0.02 -2.79 16 4 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 5 C 0.13 3.00 5.32 86.36 0.46 3.46 16 6 N -0.59 -13.33 2.97 -822.55 -2.44 -15.78 16 7 C 0.58 14.01 7.29 86.72 0.63 14.64 16 8 O -0.56 -17.11 16.48 -3.97 -0.07 -17.18 16 9 C -0.28 -5.82 5.05 -19.92 -0.10 -5.92 16 10 C 0.23 3.95 8.66 85.11 0.74 4.69 16 11 N -0.57 -11.17 9.19 -312.41 -2.87 -14.04 16 12 C 0.50 11.63 8.48 180.48 1.53 13.16 16 13 O -0.30 -6.32 10.55 -85.77 -0.90 -7.22 16 14 C 0.04 0.44 10.35 113.37 1.17 1.61 16 15 N -0.55 -13.57 10.45 -312.41 -3.26 -16.83 16 16 C 0.24 5.23 11.05 85.11 0.94 6.17 16 17 C 0.11 2.17 5.38 86.36 0.46 2.64 16 18 C -0.14 -4.25 5.66 30.67 0.17 -4.08 16 19 C 0.18 6.11 2.19 45.01 0.10 6.21 16 20 H 0.05 1.80 8.08 -2.39 -0.02 1.78 16 21 N -0.73 -33.89 4.33 -322.83 -1.40 -35.29 16 22 C -0.23 -11.75 9.93 84.03 0.83 -10.91 16 23 H 0.08 3.87 7.83 -2.91 -0.02 3.84 16 24 C -0.08 -4.24 5.50 84.86 0.47 -3.77 16 25 N -0.97 -58.11 13.06 21.65 0.28 -57.82 16 26 Si 0.96 44.68 29.55 68.60 2.03 46.71 16 27 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 28 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 29 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 30 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.46 6.70 -2.39 -0.02 1.44 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.04 1.71 7.22 -2.39 -0.02 1.69 16 35 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.09 2.29 5.74 -2.39 -0.01 2.28 16 37 H 0.21 2.20 7.04 -2.91 -0.02 2.18 16 38 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 39 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.07 0.80 8.09 -2.38 -0.02 0.78 16 41 H 0.20 3.64 8.06 -2.91 -0.02 3.62 16 42 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.09 1.59 4.50 -2.38 -0.01 1.58 16 44 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 45 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 46 H 0.37 19.15 7.51 -92.71 -0.70 18.45 16 47 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -69.60 380.09 -0.09 -69.70 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: 0.30 Total: 28.65 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: 8.25 Total: 19.11 kcal Atomic # 7 Polarization: -130.07 SS G_CDS: -9.69 Total: -139.76 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.97 Total: -24.40 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -69.60 -0.09 -69.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037962183.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.272 kcal (2) G-P(sol) polarization free energy of solvation -69.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds