Wall clock time and date at job start Tue Mar 31 2020 19:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47104 * 2 1 4 4 H 1.09006 * 109.52060 * 304.91890 * 3 2 1 5 5 C 1.53193 * 109.49768 * 64.99708 * 3 2 1 6 6 N 1.46925 * 108.89143 * 174.66085 * 5 3 2 7 7 C 1.34775 * 120.63105 * 126.34320 * 6 5 3 8 8 O 1.21579 * 119.99973 * 354.18212 * 7 6 5 9 9 C 1.47631 * 119.99980 * 174.17991 * 7 6 5 10 10 C 1.40054 * 120.88693 * 319.80044 * 9 7 6 11 11 N 1.32012 * 118.99098 * 179.71819 * 10 9 7 12 12 C 1.32464 * 120.91317 * 0.56181 * 11 10 9 13 13 O 1.35296 * 119.02168 * 179.68501 * 12 11 10 14 14 C 1.42898 * 116.99926 * 0.02562 * 13 12 11 15 15 N 1.32470 * 121.96213 * 359.70661 * 12 11 10 16 16 C 1.32019 * 120.90718 * 359.97438 * 15 12 11 17 17 C 1.46926 * 118.73858 * 306.31804 * 6 5 3 18 18 C 1.53199 * 108.77324 * 53.61183 * 17 6 5 19 19 C 1.53034 * 109.31169 * 305.36340 * 18 17 6 20 20 H 1.09004 * 109.46071 * 181.37652 * 19 18 17 21 21 N 1.46497 * 109.46032 * 301.34731 * 19 18 17 22 22 C 1.36948 * 119.99896 * 274.99785 * 21 19 18 23 23 H 1.07994 * 119.99972 * 0.02562 * 22 21 19 24 24 C 1.38807 * 119.99834 * 179.97438 * 22 21 19 25 25 N 1.31623 * 120.00360 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99900 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47041 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47024 * 120.00178 * 26 24 22 29 29 H 1.48491 * 109.47253 * 240.00208 * 26 24 22 30 30 H 1.09002 * 109.46991 * 60.00233 * 1 2 3 31 31 H 1.08997 * 109.46644 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46998 * 300.00123 * 1 2 3 33 33 H 1.09003 * 109.47482 * 239.99939 * 2 1 3 34 34 H 1.09004 * 109.47502 * 119.99203 * 2 1 3 35 35 H 1.08994 * 109.58549 * 54.80116 * 5 3 2 36 36 H 1.09002 * 109.58685 * 294.51709 * 5 3 2 37 37 H 1.08002 * 120.50234 * 359.96622 * 10 9 7 38 38 H 1.08997 * 109.47223 * 179.97438 * 14 13 12 39 39 H 1.09002 * 109.47238 * 300.00176 * 14 13 12 40 40 H 1.09002 * 109.46907 * 60.00015 * 14 13 12 41 41 H 1.08007 * 120.50084 * 179.97438 * 16 15 12 42 42 H 1.09002 * 109.58709 * 173.39361 * 17 6 5 43 43 H 1.08994 * 109.58848 * 293.82394 * 17 6 5 44 44 H 1.08997 * 109.49617 * 65.31987 * 18 17 6 45 45 H 1.09000 * 109.49141 * 185.41258 * 18 17 6 46 46 H 0.96994 * 120.00749 * 95.00121 * 21 19 18 47 47 H 0.97002 * 119.99727 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6070 1.9820 -0.8424 5 6 1.6350 2.1281 1.3087 6 7 2.2388 3.4669 1.3512 7 6 1.4764 4.5575 1.5654 8 8 0.2664 4.4521 1.6202 9 6 2.1106 5.8800 1.7334 10 6 3.2918 6.0222 2.4724 11 7 3.8299 7.2215 2.5940 12 6 3.2623 8.2816 2.0384 13 8 3.8433 9.4937 2.1926 14 6 5.0494 9.5424 2.9574 15 7 2.1426 8.1905 1.3365 16 6 1.5443 7.0266 1.1624 17 6 3.6894 3.5941 1.1562 18 6 4.0745 2.8940 -0.1509 19 6 3.5688 1.4500 -0.1196 20 1 3.8628 0.9423 -1.0383 21 7 4.1510 0.7538 1.0304 22 6 5.3899 0.1792 0.9277 23 1 5.9378 0.2397 -0.0010 24 6 5.9417 -0.4799 2.0175 25 7 5.2741 -0.5532 3.1495 26 14 7.6319 -1.2631 1.8776 27 1 8.1686 -1.0412 0.5109 28 1 8.5460 -0.6487 2.8737 29 1 7.5248 -2.7212 2.1372 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8901 35 1 1.9907 1.5399 2.1546 36 1 0.5495 2.2152 1.3549 37 1 3.7575 5.1632 2.9324 38 1 5.4097 10.5701 3.0028 39 1 4.8544 9.1804 3.9669 40 1 5.8045 8.9136 2.4855 41 1 0.6312 6.9599 0.5892 42 1 3.9594 4.6487 1.0991 43 1 4.2127 3.1255 1.9896 44 1 3.6225 3.4197 -0.9920 45 1 5.1591 2.8975 -0.2596 46 1 3.6591 0.6997 1.8646 47 1 5.6597 -1.0142 3.9109 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037962186.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:10 Heat of formation + Delta-G solvation = 0.596649 kcal Electronic energy + Delta-G solvation = -29780.471935 eV Core-core repulsion = 25771.762736 eV Total energy + Delta-G solvation = -4008.709199 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.66711 -40.07559 -38.58392 -37.72881 -34.82129 -34.01949 -33.82022 -31.96365 -31.69440 -29.52516 -28.64544 -27.84757 -25.66648 -24.97726 -24.03158 -23.70252 -23.46375 -20.91608 -20.22097 -19.15217 -18.53204 -18.40903 -17.40354 -16.99880 -16.67781 -16.06693 -15.47194 -15.18210 -14.73595 -14.70505 -14.54955 -14.09969 -14.02737 -13.86484 -13.77705 -13.32981 -13.31150 -13.00678 -12.66390 -12.35876 -12.29949 -12.01864 -11.89420 -11.57234 -11.46992 -11.25487 -11.15004 -10.99747 -10.86932 -10.76558 -10.36558 -10.32263 -10.19069 -9.86664 -9.82669 -9.61348 -9.52777 -9.24146 -8.98783 -8.36344 -7.04365 -5.85475 -3.14096 0.40662 0.75024 2.24637 2.68643 3.05480 3.36995 3.43777 3.45516 3.50420 3.68958 4.22051 4.36820 4.45761 4.52082 4.74882 4.92868 4.98345 5.01675 5.19330 5.25869 5.26610 5.39020 5.41791 5.48007 5.52917 5.64800 5.70071 5.72419 5.77008 5.85909 5.98518 6.07320 6.10105 6.26774 6.30047 6.34688 6.36152 6.50228 6.53693 6.62920 6.69697 6.77559 6.85993 6.92951 7.51549 7.63862 7.71575 8.16160 8.32996 9.45123 10.00736 10.35875 11.36781 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010853 B = 0.003714 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.315421 B = 7537.659465 C = 9532.045798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.067 0.933 5 C 0.119 3.881 6 N -0.592 5.592 7 C 0.571 3.429 8 O -0.542 6.542 9 C -0.273 4.273 10 C 0.225 3.775 11 N -0.567 5.567 12 C 0.510 3.490 13 O -0.287 6.287 14 C 0.042 3.958 15 N -0.527 5.527 16 C 0.240 3.760 17 C 0.106 3.894 18 C -0.149 4.149 19 C 0.178 3.822 20 H 0.052 0.948 21 N -0.719 5.719 22 C -0.238 4.238 23 H 0.070 0.930 24 C -0.010 4.010 25 N -0.931 5.931 26 Si 0.903 3.097 27 H -0.281 1.281 28 H -0.293 1.293 29 H -0.292 1.292 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.184 0.816 38 H 0.105 0.895 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.186 0.814 42 H 0.068 0.932 43 H 0.090 0.910 44 H 0.049 0.951 45 H 0.076 0.924 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.855 13.705 -3.338 14.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.086 0.914 5 C -0.003 4.003 6 N -0.323 5.323 7 C 0.358 3.642 8 O -0.420 6.420 9 C -0.281 4.281 10 C 0.059 3.941 11 N -0.296 5.296 12 C 0.209 3.791 13 O -0.188 6.188 14 C -0.054 4.054 15 N -0.252 5.252 16 C 0.074 3.926 17 C -0.016 4.016 18 C -0.190 4.190 19 C 0.068 3.932 20 H 0.070 0.930 21 N -0.361 5.361 22 C -0.369 4.369 23 H 0.088 0.912 24 C -0.206 4.206 25 N -0.579 5.579 26 Si 0.734 3.266 27 H -0.207 1.207 28 H -0.220 1.220 29 H -0.220 1.220 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.200 0.800 38 H 0.123 0.877 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.203 0.797 42 H 0.086 0.914 43 H 0.109 0.891 44 H 0.068 0.932 45 H 0.094 0.906 46 H 0.219 0.781 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.869 14.817 -3.298 15.942 hybrid contribution 0.874 -1.377 0.313 1.661 sum -3.995 13.440 -2.985 14.336 Atomic orbital electron populations 1.21855 0.96746 1.01087 1.01393 1.21410 0.94316 0.95619 1.03427 1.21807 0.97323 0.96220 0.96955 0.91450 1.21765 0.98977 0.80906 0.98638 1.48036 1.08704 1.06517 1.69070 1.17636 0.86343 0.83023 0.77234 1.90778 1.13387 1.85778 1.52089 1.21586 1.00881 0.97219 1.08423 1.23464 0.88251 0.93955 0.88425 1.68140 1.35654 0.99819 1.26016 1.20958 0.86618 0.85074 0.86483 1.86059 1.40457 1.23191 1.69047 1.23072 0.83190 1.03615 0.95483 1.67688 1.09464 1.28286 1.19714 1.23244 0.95666 0.84144 0.89594 1.22031 0.79107 0.99827 1.00663 1.22524 1.01928 0.99344 0.95225 1.20278 0.89734 0.90496 0.92704 0.93006 1.42482 1.18966 1.64085 1.10576 1.19256 0.93434 1.27111 0.97136 0.91207 1.24687 0.98493 1.01392 0.96019 1.69652 1.37965 1.48054 1.02276 0.86188 0.84293 0.78956 0.77143 1.20652 1.21977 1.21954 0.93331 0.93140 0.92760 0.91984 0.90455 0.90365 0.89279 0.79950 0.87703 0.91578 0.91484 0.79736 0.91431 0.89138 0.93235 0.90585 0.78104 0.93554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.67 37.16 0.36 -1.60 16 2 C -0.11 -1.64 5.21 -26.73 -0.14 -1.78 16 3 C -0.10 -1.56 2.15 -90.34 -0.19 -1.75 16 4 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 5 C 0.12 1.83 5.03 -3.71 -0.02 1.81 16 6 N -0.59 -8.70 2.97 -173.96 -0.52 -9.22 16 7 C 0.57 8.45 7.35 -12.43 -0.09 8.36 16 8 O -0.54 -9.36 16.37 5.30 0.09 -9.27 16 9 C -0.27 -3.51 5.14 -104.70 -0.54 -4.05 16 10 C 0.23 2.76 8.68 -16.79 -0.15 2.62 16 11 N -0.57 -7.19 9.19 -14.39 -0.13 -7.32 16 12 C 0.51 6.73 8.48 -90.99 -0.77 5.96 16 13 O -0.29 -3.41 10.55 -17.58 -0.19 -3.59 16 14 C 0.04 0.33 10.35 101.05 1.05 1.38 16 15 N -0.53 -7.07 10.45 -14.39 -0.15 -7.22 16 16 C 0.24 2.93 10.96 -16.79 -0.18 2.75 16 17 C 0.11 1.53 4.68 -3.71 -0.02 1.51 16 18 C -0.15 -2.29 5.78 -26.61 -0.15 -2.45 16 19 C 0.18 3.09 2.54 -67.73 -0.17 2.92 16 20 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 21 N -0.72 -15.46 3.73 -53.23 -0.20 -15.66 16 22 C -0.24 -5.93 9.93 -15.06 -0.15 -6.08 16 23 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 24 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 25 N -0.93 -25.97 13.06 55.49 0.72 -25.24 16 26 Si 0.90 21.12 29.55 -169.99 -5.02 16.10 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.69 6.69 -51.93 -0.35 0.34 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.08 1.35 7.71 -51.93 -0.40 0.95 16 35 H 0.08 1.34 6.64 -51.93 -0.34 0.99 16 36 H 0.09 1.38 5.71 -51.93 -0.30 1.08 16 37 H 0.18 2.05 6.67 -52.49 -0.35 1.70 16 38 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 40 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 41 H 0.19 1.86 8.06 -52.48 -0.42 1.44 16 42 H 0.07 0.86 4.74 -51.93 -0.25 0.61 16 43 H 0.09 1.50 7.72 -51.93 -0.40 1.10 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.38 8.85 5.95 -40.82 -0.24 8.60 16 47 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 375.92 15.07 5.67 5.67 Total: -1.00 -29.75 375.92 -7.81 -37.57 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -6.82 Total: 8.95 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: -1.27 Total: 9.25 kcal Atomic # 7 Polarization: -64.38 SS G_CDS: -0.27 Total: -64.66 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -0.10 Total: -12.87 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.75 -7.81 -37.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037962186.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.165 kcal (2) G-P(sol) polarization free energy of solvation -29.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds