Wall clock time and date at job start Tue Mar 31 2020 19:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47104 * 2 1 4 4 H 1.09006 * 109.52060 * 304.91890 * 3 2 1 5 5 C 1.53193 * 109.49768 * 64.99708 * 3 2 1 6 6 N 1.46925 * 108.89143 * 174.66085 * 5 3 2 7 7 C 1.34775 * 120.63105 * 126.34320 * 6 5 3 8 8 O 1.21579 * 119.99973 * 354.18212 * 7 6 5 9 9 C 1.47631 * 119.99980 * 174.17991 * 7 6 5 10 10 C 1.40054 * 120.88693 * 319.80044 * 9 7 6 11 11 N 1.32012 * 118.99098 * 179.71819 * 10 9 7 12 12 C 1.32464 * 120.91317 * 0.56181 * 11 10 9 13 13 O 1.35296 * 119.02168 * 179.68501 * 12 11 10 14 14 C 1.42898 * 116.99926 * 0.02562 * 13 12 11 15 15 N 1.32470 * 121.96213 * 359.70661 * 12 11 10 16 16 C 1.32019 * 120.90718 * 359.97438 * 15 12 11 17 17 C 1.46926 * 118.73858 * 306.31804 * 6 5 3 18 18 C 1.53199 * 108.77324 * 53.61183 * 17 6 5 19 19 C 1.53034 * 109.31169 * 305.36340 * 18 17 6 20 20 H 1.09004 * 109.46071 * 181.37652 * 19 18 17 21 21 N 1.46497 * 109.46032 * 301.34731 * 19 18 17 22 22 C 1.36948 * 119.99896 * 274.99785 * 21 19 18 23 23 H 1.07994 * 119.99972 * 0.02562 * 22 21 19 24 24 C 1.38807 * 119.99834 * 179.97438 * 22 21 19 25 25 N 1.31623 * 120.00360 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99900 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47041 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47024 * 120.00178 * 26 24 22 29 29 H 1.48491 * 109.47253 * 240.00208 * 26 24 22 30 30 H 1.09002 * 109.46991 * 60.00233 * 1 2 3 31 31 H 1.08997 * 109.46644 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46998 * 300.00123 * 1 2 3 33 33 H 1.09003 * 109.47482 * 239.99939 * 2 1 3 34 34 H 1.09004 * 109.47502 * 119.99203 * 2 1 3 35 35 H 1.08994 * 109.58549 * 54.80116 * 5 3 2 36 36 H 1.09002 * 109.58685 * 294.51709 * 5 3 2 37 37 H 1.08002 * 120.50234 * 359.96622 * 10 9 7 38 38 H 1.08997 * 109.47223 * 179.97438 * 14 13 12 39 39 H 1.09002 * 109.47238 * 300.00176 * 14 13 12 40 40 H 1.09002 * 109.46907 * 60.00015 * 14 13 12 41 41 H 1.08007 * 120.50084 * 179.97438 * 16 15 12 42 42 H 1.09002 * 109.58709 * 173.39361 * 17 6 5 43 43 H 1.08994 * 109.58848 * 293.82394 * 17 6 5 44 44 H 1.08997 * 109.49617 * 65.31987 * 18 17 6 45 45 H 1.09000 * 109.49141 * 185.41258 * 18 17 6 46 46 H 0.96994 * 120.00749 * 95.00121 * 21 19 18 47 47 H 0.97002 * 119.99727 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6070 1.9820 -0.8424 5 6 1.6350 2.1281 1.3087 6 7 2.2388 3.4669 1.3512 7 6 1.4764 4.5575 1.5654 8 8 0.2664 4.4521 1.6202 9 6 2.1106 5.8800 1.7334 10 6 3.2918 6.0222 2.4724 11 7 3.8299 7.2215 2.5940 12 6 3.2623 8.2816 2.0384 13 8 3.8433 9.4937 2.1926 14 6 5.0494 9.5424 2.9574 15 7 2.1426 8.1905 1.3365 16 6 1.5443 7.0266 1.1624 17 6 3.6894 3.5941 1.1562 18 6 4.0745 2.8940 -0.1509 19 6 3.5688 1.4500 -0.1196 20 1 3.8628 0.9423 -1.0383 21 7 4.1510 0.7538 1.0304 22 6 5.3899 0.1792 0.9277 23 1 5.9378 0.2397 -0.0010 24 6 5.9417 -0.4799 2.0175 25 7 5.2741 -0.5532 3.1495 26 14 7.6319 -1.2631 1.8776 27 1 8.1686 -1.0412 0.5109 28 1 8.5460 -0.6487 2.8737 29 1 7.5248 -2.7212 2.1372 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8901 35 1 1.9907 1.5399 2.1546 36 1 0.5495 2.2152 1.3549 37 1 3.7575 5.1632 2.9324 38 1 5.4097 10.5701 3.0028 39 1 4.8544 9.1804 3.9669 40 1 5.8045 8.9136 2.4855 41 1 0.6312 6.9599 0.5892 42 1 3.9594 4.6487 1.0991 43 1 4.2127 3.1255 1.9896 44 1 3.6225 3.4197 -0.9920 45 1 5.1591 2.8975 -0.2596 46 1 3.6591 0.6997 1.8646 47 1 5.6597 -1.0142 3.9109 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037962186.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:09 Heat of formation + Delta-G solvation = -20.090985 kcal Electronic energy + Delta-G solvation = -29781.369018 eV Core-core repulsion = 25771.762736 eV Total energy + Delta-G solvation = -4009.606282 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.66810 -41.25910 -39.58989 -38.95351 -36.08797 -35.40970 -35.03038 -33.41834 -32.88454 -31.02752 -29.93006 -28.66251 -26.88915 -25.99534 -25.54429 -24.96740 -24.74168 -22.19051 -21.39362 -20.06969 -19.86912 -19.43662 -19.17717 -18.19434 -17.61025 -17.25727 -16.64573 -16.38614 -16.18727 -15.89908 -15.59956 -15.55375 -15.29233 -14.93165 -14.78865 -14.74112 -14.58178 -14.27598 -14.07248 -13.66070 -13.11746 -13.09341 -12.94760 -12.91182 -12.86272 -12.62598 -12.47799 -12.33734 -12.22697 -12.04938 -11.98316 -11.81413 -11.55749 -11.42396 -11.12028 -11.04400 -10.80727 -10.50784 -10.22937 -9.64001 -8.88860 -7.86215 -5.11641 -0.59980 -0.20815 1.39488 1.50127 1.52901 1.53479 1.60053 1.87429 2.49507 2.61883 2.74902 3.21721 3.35670 3.48242 3.50289 3.76460 3.82532 3.89378 4.01139 4.09344 4.23616 4.32732 4.36496 4.37091 4.47393 4.50501 4.51028 4.59544 4.67394 4.71627 4.83051 4.85375 4.88206 5.03429 5.05521 5.19457 5.23826 5.27313 5.29423 5.41531 5.44009 5.53675 5.62986 5.67771 5.85729 6.31869 6.36061 6.75507 6.96636 7.44470 8.20019 8.43967 9.36835 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010853 B = 0.003714 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.315421 B = 7537.659465 C = 9532.045798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 C -0.092 4.092 4 H 0.086 0.914 5 C 0.125 3.875 6 N -0.591 5.591 7 C 0.578 3.422 8 O -0.566 6.566 9 C -0.279 4.279 10 C 0.228 3.772 11 N -0.570 5.570 12 C 0.504 3.496 13 O -0.297 6.297 14 C 0.036 3.964 15 N -0.541 5.541 16 C 0.248 3.752 17 C 0.115 3.885 18 C -0.143 4.143 19 C 0.173 3.827 20 H 0.046 0.954 21 N -0.723 5.723 22 C -0.224 4.224 23 H 0.074 0.926 24 C -0.068 4.068 25 N -0.965 5.965 26 Si 0.957 3.043 27 H -0.269 1.269 28 H -0.299 1.299 29 H -0.302 1.302 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.046 0.954 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.191 0.809 38 H 0.136 0.864 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.205 0.795 42 H 0.089 0.911 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.375 0.625 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.958 15.207 -4.687 16.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.143 4.143 3 C -0.112 4.112 4 H 0.104 0.896 5 C 0.003 3.997 6 N -0.321 5.321 7 C 0.366 3.634 8 O -0.446 6.446 9 C -0.287 4.287 10 C 0.062 3.938 11 N -0.299 5.299 12 C 0.203 3.797 13 O -0.197 6.197 14 C -0.058 4.058 15 N -0.267 5.267 16 C 0.082 3.918 17 C -0.007 4.007 18 C -0.183 4.183 19 C 0.064 3.936 20 H 0.064 0.936 21 N -0.364 5.364 22 C -0.356 4.356 23 H 0.091 0.909 24 C -0.260 4.260 25 N -0.617 5.617 26 Si 0.789 3.211 27 H -0.194 1.194 28 H -0.227 1.227 29 H -0.230 1.230 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.110 0.890 37 H 0.208 0.792 38 H 0.154 0.846 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.222 0.778 42 H 0.107 0.893 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.209 0.791 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.958 16.355 -4.694 17.723 hybrid contribution 0.892 -1.761 0.691 2.092 sum -4.066 14.593 -4.003 15.669 Atomic orbital electron populations 1.21791 0.94719 1.01885 1.01996 1.21332 0.96068 0.95140 1.01792 1.21716 0.95606 0.96506 0.97358 0.89612 1.21616 0.99018 0.81126 0.97958 1.48011 1.08743 1.06335 1.69038 1.17784 0.85928 0.83405 0.76307 1.90767 1.14468 1.86191 1.53179 1.21399 1.01331 0.96401 1.09599 1.23589 0.88025 0.94172 0.88013 1.68195 1.35705 0.99797 1.26222 1.21212 0.86667 0.85605 0.86190 1.86072 1.41631 1.22639 1.69402 1.23366 0.81834 1.05669 0.94954 1.67758 1.09882 1.28682 1.20342 1.23557 0.95832 0.83494 0.88939 1.21909 0.78705 1.00790 0.99289 1.22404 1.01487 0.97933 0.96519 1.20483 0.91158 0.91176 0.90762 0.93555 1.42570 1.18074 1.64302 1.11474 1.19566 0.94185 1.25191 0.96673 0.90853 1.25284 1.01391 1.03173 0.96174 1.69788 1.39278 1.49795 1.02803 0.85302 0.81159 0.77384 0.77284 1.19355 1.22663 1.22974 0.91843 0.92348 0.92935 0.92086 0.93553 0.92553 0.88993 0.79237 0.84633 0.91540 0.91466 0.77812 0.89258 0.91436 0.90920 0.91410 0.79111 0.94431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 9.67 71.98 0.70 -2.83 16 2 C -0.11 -3.09 5.21 30.60 0.16 -2.93 16 3 C -0.09 -2.67 2.15 -10.61 -0.02 -2.69 16 4 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 5 C 0.12 3.79 5.03 86.36 0.43 4.22 16 6 N -0.59 -16.68 2.97 -822.55 -2.45 -19.13 16 7 C 0.58 16.24 7.35 86.72 0.64 16.88 16 8 O -0.57 -18.76 16.37 -3.96 -0.06 -18.82 16 9 C -0.28 -6.71 5.14 -19.92 -0.10 -6.81 16 10 C 0.23 5.27 8.68 85.11 0.74 6.01 16 11 N -0.57 -13.60 9.19 -312.42 -2.87 -16.47 16 12 C 0.50 12.53 8.48 180.48 1.53 14.06 16 13 O -0.30 -6.57 10.55 -85.82 -0.91 -7.47 16 14 C 0.04 0.51 10.35 113.37 1.17 1.68 16 15 N -0.54 -13.61 10.45 -312.40 -3.26 -16.87 16 16 C 0.25 5.58 10.96 85.11 0.93 6.52 16 17 C 0.12 3.19 4.68 86.36 0.40 3.59 16 18 C -0.14 -4.14 5.78 30.67 0.18 -3.97 16 19 C 0.17 5.83 2.54 45.12 0.11 5.95 16 20 H 0.05 1.63 8.08 -2.39 -0.02 1.61 16 21 N -0.72 -31.30 3.73 -322.33 -1.20 -32.50 16 22 C -0.22 -11.14 9.93 84.03 0.83 -10.30 16 23 H 0.07 3.55 7.83 -2.91 -0.02 3.53 16 24 C -0.07 -3.60 5.50 84.86 0.47 -3.13 16 25 N -0.97 -55.12 13.06 21.65 0.28 -54.84 16 26 Si 0.96 43.82 29.55 68.60 2.03 45.85 16 27 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 28 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 29 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.05 1.28 6.69 -2.39 -0.02 1.26 16 33 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.05 1.65 7.71 -2.39 -0.02 1.63 16 35 H 0.06 1.97 6.64 -2.39 -0.02 1.96 16 36 H 0.09 2.76 5.71 -2.39 -0.01 2.75 16 37 H 0.19 4.05 6.67 -2.91 -0.02 4.03 16 38 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 0.93 8.09 -2.39 -0.02 0.91 16 40 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 41 H 0.21 3.64 8.06 -2.91 -0.02 3.61 16 42 H 0.09 2.10 4.74 -2.39 -0.01 2.09 16 43 H 0.07 2.23 7.72 -2.39 -0.02 2.21 16 44 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.38 17.72 5.95 -92.71 -0.55 17.17 16 47 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -63.35 375.92 0.18 -63.17 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: 0.45 Total: 30.83 kcal Atomic # 6 Polarization: 18.07 SS G_CDS: 8.18 Total: 26.25 kcal Atomic # 7 Polarization: -130.31 SS G_CDS: -9.50 Total: -139.80 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.97 Total: -26.30 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -63.35 0.18 -63.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037962186.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.083 kcal (2) G-P(sol) polarization free energy of solvation -63.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds