Wall clock time and date at job start Tue Mar 31 2020 19:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47125 * 2 1 4 4 H 1.08998 * 109.49951 * 55.05864 * 3 2 1 5 5 C 1.53202 * 109.49585 * 294.99924 * 3 2 1 6 6 N 1.46921 * 108.77389 * 185.41152 * 5 3 2 7 7 C 1.34774 * 120.63386 * 233.63108 * 6 5 3 8 8 O 1.21554 * 119.99658 * 358.18640 * 7 6 5 9 9 C 1.47884 * 120.00405 * 178.19115 * 7 6 5 10 10 C 1.41581 * 119.89280 * 208.25109 * 9 7 6 11 11 C 1.36325 * 118.23680 * 180.02562 * 10 9 7 12 12 C 1.41270 * 117.93538 * 359.97438 * 11 10 9 13 13 O 1.21974 * 120.22600 * 179.97438 * 12 11 10 14 14 N 1.34609 * 119.54717 * 0.02562 * 12 11 10 15 15 C 1.46505 * 119.09647 * 180.02562 * 14 12 11 16 16 N 1.28384 * 121.80204 * 359.71661 * 14 12 11 17 17 C 1.46931 * 118.73879 * 53.61198 * 6 5 3 18 18 C 1.53194 * 108.77457 * 306.38853 * 17 6 5 19 19 C 1.53038 * 109.49777 * 175.16136 * 3 2 1 20 20 H 1.08999 * 109.46244 * 61.30032 * 19 3 2 21 21 N 1.46495 * 109.46146 * 301.33776 * 19 3 2 22 22 C 1.36938 * 120.00159 * 155.00214 * 21 19 3 23 23 H 1.08002 * 120.00001 * 0.02562 * 22 21 19 24 24 C 1.38812 * 119.99902 * 179.97438 * 22 21 19 25 25 N 1.31614 * 120.00038 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99871 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.47171 * 359.97438 * 26 24 22 28 28 H 1.48492 * 109.47392 * 120.00259 * 26 24 22 29 29 H 1.48500 * 109.47195 * 240.00401 * 26 24 22 30 30 H 1.09004 * 109.46932 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47130 * 60.00067 * 1 2 3 32 32 H 1.08995 * 109.47405 * 299.99938 * 1 2 3 33 33 H 1.09000 * 109.47508 * 120.00252 * 2 1 3 34 34 H 1.09005 * 109.47536 * 240.00195 * 2 1 3 35 35 H 1.08998 * 109.58312 * 305.19973 * 5 3 2 36 36 H 1.08999 * 109.58249 * 65.62807 * 5 3 2 37 37 H 1.08000 * 120.88121 * 0.02562 * 10 9 7 38 38 H 1.08000 * 121.03604 * 179.97438 * 11 10 9 39 39 H 1.08993 * 109.47329 * 90.00273 * 15 14 12 40 40 H 1.09008 * 109.46418 * 210.00052 * 15 14 12 41 41 H 1.08994 * 109.47284 * 329.99393 * 15 14 12 42 42 H 1.08995 * 109.58885 * 66.17494 * 17 6 5 43 43 H 1.08997 * 109.58540 * 186.46333 * 17 6 5 44 44 H 1.08999 * 109.50026 * 174.58780 * 18 17 6 45 45 H 1.09000 * 109.49662 * 294.65540 * 18 17 6 46 46 H 0.97001 * 119.99819 * 334.99667 * 21 19 3 47 47 H 0.97000 * 120.00090 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6064 1.9817 0.8423 5 6 1.6350 2.1280 -1.3089 6 7 2.2414 3.4656 -1.3494 7 6 1.4814 4.5580 -1.5629 8 8 0.2874 4.4391 -1.7570 9 6 2.1001 5.9012 -1.5612 10 6 1.3329 7.0310 -1.1878 11 6 1.9370 8.2530 -1.1987 12 6 3.2951 8.3166 -1.5824 13 8 3.8766 9.3885 -1.6074 14 7 3.9427 7.1863 -1.9213 15 6 5.3511 7.2635 -2.3172 16 7 3.3616 6.0417 -1.9016 17 6 3.6921 3.5899 -1.1523 18 6 4.0740 2.8881 0.1547 19 6 3.5655 1.4450 0.1217 20 1 3.9989 0.9269 -0.7338 21 7 3.9578 0.7608 1.3563 22 6 5.1962 0.1850 1.4562 23 1 5.8839 0.2356 0.6250 24 6 5.5680 -0.4628 2.6263 25 7 4.7301 -0.5240 3.6394 26 14 7.2571 -1.2488 2.7624 27 1 8.0023 -1.0434 1.4943 28 1 8.0047 -0.6246 3.8832 29 1 7.1067 -2.7040 3.0172 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5139 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.9907 1.5397 -2.1547 36 1 0.5496 2.2174 -1.3539 37 1 0.2966 6.9274 -0.9019 38 1 1.3942 9.1450 -0.9225 39 1 5.9829 7.1508 -1.4362 40 1 5.5730 6.4671 -3.0276 41 1 5.5453 8.2298 -2.7824 42 1 4.2156 3.1209 -1.9854 43 1 3.9643 4.6439 -1.0966 44 1 5.1584 2.8892 0.2649 45 1 3.6223 3.4142 0.9956 46 1 3.3402 0.7158 2.1030 47 1 4.9897 -0.9770 4.4568 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037974381.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:24 Heat of formation + Delta-G solvation = 21.248881 kcal Electronic energy + Delta-G solvation = -29728.146455 eV Core-core repulsion = 25720.332804 eV Total energy + Delta-G solvation = -4007.813651 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.49368 -40.21572 -38.20588 -37.79414 -35.22169 -34.88149 -33.82616 -32.01473 -31.69868 -29.55899 -29.18451 -28.31623 -25.99859 -24.78698 -24.16299 -23.67778 -22.84862 -21.00000 -20.66984 -19.53470 -18.80463 -17.74077 -17.29581 -17.12952 -16.98399 -16.29214 -15.94916 -15.20257 -15.04193 -14.57016 -14.30507 -13.94546 -13.80842 -13.75357 -13.64056 -13.38901 -13.26398 -13.14477 -13.03967 -12.97168 -12.61859 -12.23776 -12.13165 -11.73278 -11.36954 -11.32950 -10.97279 -10.88061 -10.80790 -10.72169 -10.44080 -10.32273 -10.23577 -10.17090 -9.91083 -9.70411 -9.63718 -8.96332 -8.87163 -8.56865 -6.99921 -5.81593 -3.10242 0.07922 0.86529 1.75240 2.53177 2.81447 3.16670 3.39030 3.44820 3.47189 3.61927 4.23192 4.35092 4.41853 4.53921 4.85530 4.88328 5.01478 5.15583 5.17115 5.21785 5.25501 5.27016 5.37146 5.45732 5.50497 5.55697 5.57755 5.60945 5.65557 5.78811 5.82956 6.01996 6.08438 6.13821 6.29884 6.31072 6.34898 6.41702 6.50040 6.63009 6.78875 6.91298 7.01243 7.15788 7.31944 7.59132 7.65478 7.96689 8.36572 9.48297 10.05483 10.40234 11.40867 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012165 B = 0.003410 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.184884 B = 8209.457103 C = 9930.551252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.105 4.105 4 H 0.071 0.929 5 C 0.118 3.882 6 N -0.583 5.583 7 C 0.585 3.415 8 O -0.535 6.535 9 C 0.022 3.978 10 C -0.030 4.030 11 C -0.191 4.191 12 C 0.480 3.520 13 O -0.528 6.528 14 N -0.343 5.343 15 C 0.075 3.925 16 N -0.172 5.172 17 C 0.091 3.909 18 C -0.153 4.153 19 C 0.183 3.817 20 H 0.049 0.951 21 N -0.720 5.720 22 C -0.238 4.238 23 H 0.070 0.930 24 C -0.012 4.012 25 N -0.931 5.931 26 Si 0.904 3.096 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.162 0.838 38 H 0.169 0.831 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.071 0.929 43 H 0.105 0.895 44 H 0.076 0.924 45 H 0.057 0.943 46 H 0.384 0.616 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.580 12.753 -12.669 18.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.125 4.125 4 H 0.089 0.911 5 C -0.004 4.004 6 N -0.314 5.314 7 C 0.370 3.630 8 O -0.410 6.410 9 C -0.148 4.148 10 C -0.053 4.053 11 C -0.221 4.221 12 C 0.279 3.721 13 O -0.406 6.406 14 N -0.165 5.165 15 C -0.065 4.065 16 N -0.002 5.002 17 C -0.032 4.032 18 C -0.194 4.194 19 C 0.073 3.927 20 H 0.067 0.933 21 N -0.360 5.360 22 C -0.369 4.369 23 H 0.088 0.912 24 C -0.208 4.208 25 N -0.579 5.579 26 Si 0.735 3.265 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.219 1.219 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.180 0.820 38 H 0.187 0.813 39 H 0.106 0.894 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.090 0.910 43 H 0.122 0.878 44 H 0.094 0.906 45 H 0.076 0.924 46 H 0.218 0.782 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.916 12.774 -13.091 18.940 hybrid contribution 0.367 0.065 0.815 0.896 sum -4.549 12.839 -12.276 18.337 Atomic orbital electron populations 1.21850 0.96759 1.01110 1.01322 1.21451 0.94400 0.95554 1.03568 1.21799 0.97748 0.96372 0.96567 0.91093 1.21879 0.99513 0.80732 0.98233 1.48047 1.09092 1.06289 1.67988 1.17254 0.85808 0.82188 0.77765 1.90809 1.14012 1.85375 1.50840 1.21811 0.89265 0.96680 1.07046 1.22196 1.01804 0.90467 0.90862 1.22678 0.93885 0.99981 1.05549 1.18096 0.89208 0.84335 0.80493 1.90973 1.68909 1.26664 1.54097 1.46905 1.13784 1.03337 1.52447 1.22295 0.75602 1.05648 1.02923 1.71388 1.10724 1.08822 1.09281 1.22560 0.78545 1.03164 0.98967 1.22722 1.02220 0.99229 0.95244 1.20203 0.90701 0.90552 0.91292 0.93326 1.42417 1.16498 1.64416 1.12717 1.19253 0.91780 1.27286 0.98606 0.91180 1.24718 0.98105 1.01529 0.96427 1.69662 1.35199 1.48346 1.04727 0.86172 0.84050 0.78933 0.77343 1.20591 1.21964 1.21908 0.93143 0.93170 0.92958 0.89731 0.92378 0.91094 0.88827 0.82029 0.81347 0.89433 0.88241 0.87965 0.91025 0.87764 0.90569 0.92425 0.78207 0.93563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.67 37.16 0.36 -1.62 16 2 C -0.11 -1.70 5.31 -26.73 -0.14 -1.84 16 3 C -0.10 -1.60 1.93 -90.49 -0.17 -1.78 16 4 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 5 C 0.12 1.58 5.32 -3.71 -0.02 1.56 16 6 N -0.58 -7.71 2.97 -173.86 -0.52 -8.23 16 7 C 0.59 7.85 7.57 -12.31 -0.09 7.76 16 8 O -0.53 -8.25 16.13 5.32 0.09 -8.17 16 9 C 0.02 0.26 6.42 -82.83 -0.53 -0.27 16 10 C -0.03 -0.29 9.69 -39.00 -0.38 -0.66 16 11 C -0.19 -1.80 10.11 -39.12 -0.40 -2.20 16 12 C 0.48 5.57 7.47 -15.18 -0.11 5.46 16 13 O -0.53 -7.47 16.62 4.94 0.08 -7.38 16 14 N -0.34 -3.54 3.62 -70.15 -0.25 -3.80 16 15 C 0.08 0.54 10.58 59.85 0.63 1.17 16 16 N -0.17 -1.86 7.19 33.42 0.24 -1.62 16 17 C 0.09 1.15 6.01 -3.71 -0.02 1.13 16 18 C -0.15 -2.44 5.66 -26.61 -0.15 -2.59 16 19 C 0.18 3.26 2.19 -67.89 -0.15 3.11 16 20 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 21 N -0.72 -16.58 4.33 -53.39 -0.23 -16.81 16 22 C -0.24 -6.18 9.93 -15.06 -0.15 -6.33 16 23 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 24 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 25 N -0.93 -27.06 13.06 55.49 0.72 -26.33 16 26 Si 0.90 21.59 29.55 -169.99 -5.02 16.56 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.59 6.70 -51.93 -0.35 0.24 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 1.56 7.22 -51.93 -0.37 1.19 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.09 1.27 5.73 -51.93 -0.30 0.97 16 37 H 0.16 1.26 7.95 -52.49 -0.42 0.85 16 38 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.10 0.53 8.14 -51.92 -0.42 0.11 16 41 H 0.10 0.71 7.36 -51.93 -0.38 0.33 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.11 1.24 4.16 -85.30 -0.36 0.88 16 44 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.38 9.60 7.51 -40.82 -0.31 9.30 16 47 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 378.46 15.07 5.70 5.70 Total: -1.00 -31.89 378.46 -7.71 -39.60 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -7.10 Total: 7.99 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -1.42 Total: 2.48 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: -0.04 Total: -56.79 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.17 Total: -15.55 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.89 -7.71 -39.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037974381.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.851 kcal (2) G-P(sol) polarization free energy of solvation -31.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds