Wall clock time and date at job start Tue Mar 31 2020 19:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47125 * 2 1 4 4 H 1.08998 * 109.49951 * 55.05864 * 3 2 1 5 5 C 1.53202 * 109.49585 * 294.99924 * 3 2 1 6 6 N 1.46921 * 108.77389 * 185.41152 * 5 3 2 7 7 C 1.34774 * 120.63386 * 233.63108 * 6 5 3 8 8 O 1.21554 * 119.99658 * 358.18640 * 7 6 5 9 9 C 1.47884 * 120.00405 * 178.19115 * 7 6 5 10 10 C 1.41581 * 119.89280 * 208.25109 * 9 7 6 11 11 C 1.36325 * 118.23680 * 180.02562 * 10 9 7 12 12 C 1.41270 * 117.93538 * 359.97438 * 11 10 9 13 13 O 1.21974 * 120.22600 * 179.97438 * 12 11 10 14 14 N 1.34609 * 119.54717 * 0.02562 * 12 11 10 15 15 C 1.46505 * 119.09647 * 180.02562 * 14 12 11 16 16 N 1.28384 * 121.80204 * 359.71661 * 14 12 11 17 17 C 1.46931 * 118.73879 * 53.61198 * 6 5 3 18 18 C 1.53194 * 108.77457 * 306.38853 * 17 6 5 19 19 C 1.53038 * 109.49777 * 175.16136 * 3 2 1 20 20 H 1.08999 * 109.46244 * 61.30032 * 19 3 2 21 21 N 1.46495 * 109.46146 * 301.33776 * 19 3 2 22 22 C 1.36938 * 120.00159 * 155.00214 * 21 19 3 23 23 H 1.08002 * 120.00001 * 0.02562 * 22 21 19 24 24 C 1.38812 * 119.99902 * 179.97438 * 22 21 19 25 25 N 1.31614 * 120.00038 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99871 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.47171 * 359.97438 * 26 24 22 28 28 H 1.48492 * 109.47392 * 120.00259 * 26 24 22 29 29 H 1.48500 * 109.47195 * 240.00401 * 26 24 22 30 30 H 1.09004 * 109.46932 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47130 * 60.00067 * 1 2 3 32 32 H 1.08995 * 109.47405 * 299.99938 * 1 2 3 33 33 H 1.09000 * 109.47508 * 120.00252 * 2 1 3 34 34 H 1.09005 * 109.47536 * 240.00195 * 2 1 3 35 35 H 1.08998 * 109.58312 * 305.19973 * 5 3 2 36 36 H 1.08999 * 109.58249 * 65.62807 * 5 3 2 37 37 H 1.08000 * 120.88121 * 0.02562 * 10 9 7 38 38 H 1.08000 * 121.03604 * 179.97438 * 11 10 9 39 39 H 1.08993 * 109.47329 * 90.00273 * 15 14 12 40 40 H 1.09008 * 109.46418 * 210.00052 * 15 14 12 41 41 H 1.08994 * 109.47284 * 329.99393 * 15 14 12 42 42 H 1.08995 * 109.58885 * 66.17494 * 17 6 5 43 43 H 1.08997 * 109.58540 * 186.46333 * 17 6 5 44 44 H 1.08999 * 109.50026 * 174.58780 * 18 17 6 45 45 H 1.09000 * 109.49662 * 294.65540 * 18 17 6 46 46 H 0.97001 * 119.99819 * 334.99667 * 21 19 3 47 47 H 0.97000 * 120.00090 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6064 1.9817 0.8423 5 6 1.6350 2.1280 -1.3089 6 7 2.2414 3.4656 -1.3494 7 6 1.4814 4.5580 -1.5629 8 8 0.2874 4.4391 -1.7570 9 6 2.1001 5.9012 -1.5612 10 6 1.3329 7.0310 -1.1878 11 6 1.9370 8.2530 -1.1987 12 6 3.2951 8.3166 -1.5824 13 8 3.8766 9.3885 -1.6074 14 7 3.9427 7.1863 -1.9213 15 6 5.3511 7.2635 -2.3172 16 7 3.3616 6.0417 -1.9016 17 6 3.6921 3.5899 -1.1523 18 6 4.0740 2.8881 0.1547 19 6 3.5655 1.4450 0.1217 20 1 3.9989 0.9269 -0.7338 21 7 3.9578 0.7608 1.3563 22 6 5.1962 0.1850 1.4562 23 1 5.8839 0.2356 0.6250 24 6 5.5680 -0.4628 2.6263 25 7 4.7301 -0.5240 3.6394 26 14 7.2571 -1.2488 2.7624 27 1 8.0023 -1.0434 1.4943 28 1 8.0047 -0.6246 3.8832 29 1 7.1067 -2.7040 3.0172 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5139 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.9907 1.5397 -2.1547 36 1 0.5496 2.2174 -1.3539 37 1 0.2966 6.9274 -0.9019 38 1 1.3942 9.1450 -0.9225 39 1 5.9829 7.1508 -1.4362 40 1 5.5730 6.4671 -3.0276 41 1 5.5453 8.2298 -2.7824 42 1 4.2156 3.1209 -1.9854 43 1 3.9643 4.6439 -1.0966 44 1 5.1584 2.8892 0.2649 45 1 3.6223 3.4142 0.9956 46 1 3.3402 0.7158 2.1030 47 1 4.9897 -0.9770 4.4568 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037974381.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:22 Heat of formation + Delta-G solvation = 0.949808 kcal Electronic energy + Delta-G solvation = -29729.026689 eV Core-core repulsion = 25720.332804 eV Total energy + Delta-G solvation = -4008.693885 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.33910 -41.31716 -39.33669 -38.85555 -36.26027 -36.01257 -35.30081 -33.46991 -32.78572 -31.08819 -30.21327 -29.27495 -27.13296 -26.04006 -25.30333 -24.62084 -24.33401 -22.28230 -21.78160 -20.82320 -19.70699 -19.06139 -18.62030 -18.16866 -17.85465 -17.33196 -16.89390 -16.72774 -16.26644 -15.74813 -15.58950 -15.39113 -15.00960 -14.71171 -14.65874 -14.55574 -14.44229 -14.36537 -14.07633 -13.72393 -13.57477 -13.53287 -13.19205 -13.05192 -12.87258 -12.75926 -12.49245 -12.41112 -12.09446 -12.00308 -11.80689 -11.60727 -11.50865 -11.47763 -11.34848 -11.07110 -10.97474 -10.64888 -9.82020 -9.64750 -8.92633 -7.89335 -5.16242 -0.71961 -0.01978 0.97251 1.49259 1.50194 1.54593 1.59119 1.82248 2.29326 2.59289 2.73958 3.34205 3.44788 3.54187 3.67566 3.81362 3.82114 4.02844 4.12389 4.28976 4.30693 4.35574 4.37560 4.42542 4.48728 4.50297 4.57024 4.68433 4.70051 4.77466 4.81023 4.83777 4.86736 4.89925 5.03443 5.06281 5.09522 5.20229 5.33529 5.39556 5.49829 5.54493 5.61114 5.68247 6.23005 6.31677 6.32655 6.72499 6.92915 7.39267 8.15956 8.38538 9.34399 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012165 B = 0.003410 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.184884 B = 8209.457103 C = 9930.551252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C -0.094 4.094 4 H 0.055 0.945 5 C 0.125 3.875 6 N -0.586 5.586 7 C 0.588 3.412 8 O -0.555 6.555 9 C 0.012 3.988 10 C -0.026 4.026 11 C -0.186 4.186 12 C 0.469 3.531 13 O -0.560 6.560 14 N -0.340 5.340 15 C 0.066 3.934 16 N -0.170 5.170 17 C 0.103 3.897 18 C -0.143 4.143 19 C 0.178 3.822 20 H 0.050 0.950 21 N -0.731 5.731 22 C -0.227 4.227 23 H 0.078 0.922 24 C -0.075 4.075 25 N -0.970 5.970 26 Si 0.964 3.036 27 H -0.264 1.264 28 H -0.299 1.299 29 H -0.298 1.298 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.180 0.820 38 H 0.192 0.808 39 H 0.096 0.904 40 H 0.120 0.880 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.118 0.882 44 H 0.065 0.935 45 H 0.041 0.959 46 H 0.370 0.630 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.565 13.542 -14.736 20.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.114 4.114 4 H 0.073 0.927 5 C 0.003 3.997 6 N -0.316 5.316 7 C 0.373 3.627 8 O -0.432 6.432 9 C -0.158 4.158 10 C -0.050 4.050 11 C -0.215 4.215 12 C 0.270 3.730 13 O -0.441 6.441 14 N -0.161 5.161 15 C -0.072 4.072 16 N -0.001 5.001 17 C -0.020 4.020 18 C -0.184 4.184 19 C 0.070 3.930 20 H 0.068 0.932 21 N -0.370 5.370 22 C -0.359 4.359 23 H 0.096 0.904 24 C -0.267 4.267 25 N -0.622 5.622 26 Si 0.794 3.206 27 H -0.188 1.188 28 H -0.227 1.227 29 H -0.226 1.226 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.115 0.885 37 H 0.197 0.803 38 H 0.209 0.791 39 H 0.114 0.886 40 H 0.139 0.861 41 H 0.122 0.878 42 H 0.108 0.892 43 H 0.134 0.866 44 H 0.084 0.916 45 H 0.059 0.941 46 H 0.202 0.798 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.893 13.572 -15.220 20.971 hybrid contribution 0.351 -0.153 1.389 1.441 sum -4.542 13.420 -13.831 19.799 Atomic orbital electron populations 1.21787 0.94753 1.01904 1.01906 1.21353 0.96146 0.95034 1.01975 1.21647 0.95658 0.96631 0.97429 0.92698 1.21806 0.99788 0.80889 0.97219 1.48078 1.09229 1.06346 1.67986 1.17418 0.85510 0.82660 0.77075 1.90799 1.14878 1.85782 1.51720 1.21696 0.89870 0.96332 1.07873 1.22322 1.02460 0.89715 0.90453 1.22885 0.93021 1.00837 1.04796 1.18462 0.89987 0.84186 0.80373 1.90960 1.69703 1.27681 1.55766 1.47112 1.14665 1.02884 1.51418 1.22577 0.74109 1.06636 1.03899 1.71301 1.10602 1.08996 1.09232 1.22500 0.78433 1.03654 0.97445 1.22514 1.01235 0.97876 0.96754 1.20445 0.92552 0.91036 0.89011 0.93184 1.42599 1.15470 1.64900 1.13993 1.19631 0.92584 1.25435 0.98250 0.90390 1.25436 1.01378 1.03308 0.96614 1.69817 1.36996 1.50200 1.05170 0.85200 0.80473 0.77364 0.77524 1.18798 1.22687 1.22614 0.92308 0.91351 0.93537 0.93619 0.91570 0.89308 0.88496 0.80268 0.79112 0.88561 0.86117 0.87815 0.89153 0.86553 0.91635 0.94061 0.79784 0.94368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.67 71.98 0.70 -2.90 16 2 C -0.11 -3.21 5.31 30.59 0.16 -3.05 16 3 C -0.09 -2.80 1.93 -10.71 -0.02 -2.83 16 4 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 5 C 0.13 3.06 5.32 86.37 0.46 3.52 16 6 N -0.59 -14.19 2.97 -822.26 -2.44 -16.64 16 7 C 0.59 14.49 7.57 86.80 0.66 15.15 16 8 O -0.55 -15.97 16.13 -3.89 -0.06 -16.04 16 9 C 0.01 0.25 6.42 42.59 0.27 0.52 16 10 C -0.03 -0.44 9.69 22.65 0.22 -0.23 16 11 C -0.19 -3.11 10.11 22.57 0.23 -2.89 16 12 C 0.47 10.16 7.47 85.01 0.63 10.79 16 13 O -0.56 -15.27 16.62 -5.23 -0.09 -15.36 16 14 N -0.34 -6.34 3.62 -494.06 -1.79 -8.13 16 15 C 0.07 0.82 10.58 127.77 1.35 2.17 16 16 N -0.17 -3.29 7.19 -48.19 -0.35 -3.64 16 17 C 0.10 2.36 6.01 86.36 0.52 2.88 16 18 C -0.14 -4.43 5.66 30.67 0.17 -4.25 16 19 C 0.18 6.25 2.19 45.02 0.10 6.35 16 20 H 0.05 1.76 8.08 -2.39 -0.02 1.74 16 21 N -0.73 -34.16 4.33 -322.82 -1.40 -35.55 16 22 C -0.23 -11.80 9.93 84.03 0.83 -10.97 16 23 H 0.08 3.87 7.83 -2.91 -0.02 3.84 16 24 C -0.08 -4.16 5.50 84.86 0.47 -3.70 16 25 N -0.97 -58.00 13.06 21.65 0.28 -57.72 16 26 Si 0.96 44.77 29.55 68.60 2.03 46.80 16 27 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 28 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 29 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 1.44 6.70 -2.39 -0.02 1.43 16 32 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.04 1.74 7.22 -2.39 -0.02 1.72 16 34 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.10 2.39 5.73 -2.39 -0.01 2.37 16 37 H 0.18 2.35 7.95 -2.91 -0.02 2.32 16 38 H 0.19 2.23 8.06 -2.91 -0.02 2.20 16 39 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.12 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.10 1.29 7.36 -2.39 -0.02 1.27 16 42 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.12 2.48 4.16 -45.55 -0.19 2.29 16 44 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.37 19.20 7.51 -92.71 -0.70 18.51 16 47 H 0.25 14.49 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -69.39 378.46 3.05 -66.34 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: 0.12 Total: 29.35 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 6.75 Total: 10.59 kcal Atomic # 7 Polarization: -115.98 SS G_CDS: -5.69 Total: -121.68 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -0.15 Total: -31.40 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -69.39 3.05 -66.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037974381.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.288 kcal (2) G-P(sol) polarization free energy of solvation -69.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds