Wall clock time and date at job start Tue Mar 31 2020 18:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46900 * 2 1 4 4 C 1.52995 * 109.47156 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47213 * 179.97438 * 4 3 2 6 6 N 1.28386 * 119.10509 * 269.72855 * 5 4 3 7 7 C 1.31400 * 122.26993 * 179.74902 * 6 5 4 8 8 C 1.47885 * 119.89789 * 180.26837 * 7 6 5 9 9 O 1.21553 * 120.00156 * 180.24549 * 8 7 6 10 10 N 1.34777 * 119.99565 * 0.25311 * 8 7 6 11 11 C 1.46504 * 119.99890 * 179.97438 * 10 8 7 12 12 C 1.52993 * 109.47209 * 179.97438 * 11 10 8 13 13 H 1.09005 * 112.96446 * 53.32610 * 12 11 10 14 14 C 1.53946 * 113.77085 * 184.99683 * 12 11 10 15 15 C 1.53948 * 86.28885 * 137.90988 * 14 12 11 16 16 N 1.47575 * 113.77330 * 281.49845 * 12 11 10 17 17 C 1.36942 * 134.49505 * 41.05731 * 16 12 11 18 18 H 1.08004 * 119.99466 * 353.48403 * 17 16 12 19 19 C 1.38804 * 120.00144 * 173.49470 * 17 16 12 20 20 N 1.31621 * 120.00139 * 5.06395 * 19 17 16 21 21 Si 1.86801 * 119.99890 * 185.06899 * 19 17 16 22 22 H 1.48498 * 109.47326 * 94.98039 * 21 19 17 23 23 H 1.48504 * 109.47028 * 214.98347 * 21 19 17 24 24 H 1.48497 * 109.47060 * 334.98108 * 21 19 17 25 25 C 1.41584 * 120.20961 * 0.52503 * 7 6 5 26 26 C 1.36321 * 118.24104 * 359.74343 * 25 7 6 27 27 C 1.34609 * 119.10049 * 89.99899 * 5 4 3 28 28 O 1.21985 * 120.22369 * 0.02562 * 27 5 4 29 29 H 1.09000 * 109.46881 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47843 * 300.00279 * 1 2 3 31 31 H 1.09006 * 109.47039 * 60.00740 * 1 2 3 32 32 H 1.08996 * 109.47591 * 240.00169 * 2 1 3 33 33 H 1.08996 * 109.47038 * 119.99272 * 2 1 3 34 34 H 1.09002 * 109.47200 * 59.99101 * 3 2 1 35 35 H 1.09007 * 109.46940 * 299.99964 * 3 2 1 36 36 H 1.08997 * 109.47348 * 299.99949 * 4 3 2 37 37 H 1.09005 * 109.47366 * 60.00029 * 4 3 2 38 38 H 0.97002 * 120.00649 * 359.97438 * 10 8 7 39 39 H 1.08998 * 109.46904 * 300.00441 * 11 10 8 40 40 H 1.09003 * 109.47061 * 59.99645 * 11 10 8 41 41 H 1.08993 * 113.74740 * 252.25825 * 14 12 11 42 42 H 1.08997 * 113.73821 * 23.46497 * 14 12 11 43 43 H 1.09000 * 113.76831 * 90.69904 * 15 14 12 44 44 H 1.08996 * 113.77351 * 221.97926 * 15 14 12 45 45 H 0.96999 * 119.99709 * 180.02562 * 20 19 17 46 46 H 1.08001 * 120.87710 * 179.77661 * 25 7 6 47 47 H 1.08002 * 121.03762 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0582 2.8239 0.0000 6 7 4.2718 3.4102 -1.1220 7 6 4.7049 4.6486 -1.1951 8 6 4.9277 5.2748 -2.5162 9 8 5.3325 6.4188 -2.5860 10 7 4.6816 4.5771 -3.6427 11 6 4.9018 5.1975 -4.9515 12 6 4.5499 4.1983 -6.0553 13 1 3.5487 3.7808 -5.9476 14 6 4.8607 4.7068 -7.4747 15 6 5.3983 3.2919 -7.7557 16 7 5.5961 3.1861 -6.2971 17 6 6.4198 2.4458 -5.4915 18 1 6.4433 2.6308 -4.4277 19 6 7.2246 1.4581 -6.0423 20 7 7.2712 1.2992 -7.3480 21 14 8.2414 0.3540 -4.9302 22 1 7.4941 -0.9007 -4.6610 23 1 9.5284 0.0304 -5.5968 24 1 8.5101 1.0547 -3.6488 25 6 4.9641 5.3836 -0.0131 26 6 4.7471 4.7736 1.1865 27 6 4.2759 3.4418 1.1759 28 8 4.0684 2.8555 2.2253 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 1.6765 1.9564 0.8899 35 1 1.6766 1.9564 -0.8900 36 1 3.9329 0.9290 0.8908 37 1 3.9337 0.9287 -0.8891 38 1 4.3588 3.6640 -3.5870 39 1 4.2702 6.0809 -5.0455 40 1 5.9483 5.4877 -5.0446 41 1 3.9732 4.9620 -8.0536 42 1 5.6255 5.4827 -7.5052 43 1 4.6472 2.6064 -8.1481 44 1 6.3255 3.2800 -8.3287 45 1 7.8334 0.6087 -7.7328 46 1 5.3237 6.4009 -0.0606 47 1 4.9303 5.2920 2.1161 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039002364.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:23 Heat of formation + Delta-G solvation = 39.035986 kcal Electronic energy + Delta-G solvation = -29042.138903 eV Core-core repulsion = 25035.096558 eV Total energy + Delta-G solvation = -4007.042345 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.32839 -39.57463 -38.08720 -37.72627 -36.40974 -34.41087 -34.15801 -32.25266 -31.71953 -29.84045 -28.09397 -27.71396 -25.97757 -24.87018 -23.39687 -23.22497 -22.29346 -21.49586 -20.96629 -19.35999 -18.64009 -18.17800 -16.95602 -16.74452 -16.58433 -16.08174 -15.77598 -15.54060 -15.38224 -14.69523 -14.58555 -14.12349 -14.03693 -13.81049 -13.56586 -13.47179 -13.35205 -13.13419 -12.98478 -12.74719 -11.99479 -11.84444 -11.75137 -11.62264 -11.49067 -11.42344 -11.14163 -11.05449 -10.89591 -10.78817 -10.60772 -10.58931 -10.27773 -10.02099 -9.85463 -9.77355 -9.44245 -8.88659 -8.81631 -8.62205 -6.91683 -5.81365 -3.12760 0.25794 1.00009 1.88893 2.75337 3.19395 3.34366 3.40249 3.42232 3.46957 3.78987 4.38795 4.40722 4.49308 4.56061 4.59619 4.68539 4.78306 4.97607 5.09012 5.16856 5.22304 5.32883 5.34875 5.43644 5.44617 5.54482 5.57396 5.61288 5.63899 5.70682 5.80138 5.84115 5.87338 5.92351 6.01273 6.01767 6.25186 6.36437 6.57282 6.62771 6.77175 7.22675 7.30487 7.36126 7.56624 7.64080 7.85276 7.94582 8.30112 9.01011 9.67653 10.56233 11.35948 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008881 B = 0.003730 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3151.874583 B = 7504.480591 C = 8432.871493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.133 4.133 4 C 0.105 3.895 5 N -0.333 5.333 6 N -0.174 5.174 7 C 0.020 3.980 8 C 0.583 3.417 9 O -0.538 6.538 10 N -0.691 5.691 11 C 0.121 3.879 12 C 0.125 3.875 13 H 0.051 0.949 14 C -0.156 4.156 15 C 0.162 3.838 16 N -0.602 5.602 17 C -0.219 4.219 18 H 0.079 0.921 19 C -0.004 4.004 20 N -0.917 5.917 21 Si 0.902 3.098 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.282 1.282 25 C -0.027 4.027 26 C -0.198 4.198 27 C 0.480 3.520 28 O -0.529 6.529 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.412 0.588 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.077 0.923 43 H 0.028 0.972 44 H 0.069 0.931 45 H 0.253 0.747 46 H 0.164 0.836 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.233 3.895 12.049 16.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.171 4.171 4 C -0.014 4.014 5 N -0.154 5.154 6 N -0.004 5.004 7 C -0.151 4.151 8 C 0.365 3.635 9 O -0.413 6.413 10 N -0.341 5.341 11 C -0.003 4.003 12 C 0.017 3.983 13 H 0.068 0.932 14 C -0.195 4.195 15 C 0.036 3.964 16 N -0.328 5.328 17 C -0.347 4.347 18 H 0.097 0.903 19 C -0.201 4.201 20 N -0.563 5.563 21 Si 0.733 3.267 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.051 4.051 26 C -0.227 4.227 27 C 0.279 3.721 28 O -0.408 6.408 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.248 0.752 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.046 0.954 44 H 0.088 0.912 45 H 0.063 0.937 46 H 0.181 0.819 47 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -11.051 3.374 12.136 16.757 hybrid contribution 0.671 -0.684 1.218 1.550 sum -10.381 2.690 13.354 17.127 Atomic orbital electron populations 1.21745 0.95319 1.01863 1.01948 1.21430 0.96394 0.95300 1.02754 1.21950 0.93129 0.98699 1.03326 1.22233 0.95724 0.77428 1.06039 1.46905 1.50896 1.15090 1.02510 1.71132 1.06246 1.10473 1.12598 1.21904 1.06369 0.90278 0.96570 1.17187 0.78594 0.85412 0.82289 1.90796 1.46988 1.17139 1.86425 1.45866 1.64913 1.17833 1.05482 1.21899 1.02058 0.95892 0.80489 1.22509 0.93247 0.89887 0.92646 0.93204 1.23788 1.00069 1.00078 0.95536 1.22133 0.98245 0.89146 0.86828 1.46068 1.37735 1.46431 1.02558 1.18943 1.14807 1.10801 0.90158 0.90306 1.24769 1.00513 0.99001 0.95823 1.69831 1.42525 1.35124 1.08860 0.86247 0.79637 0.81100 0.79714 1.21671 1.21689 1.20718 1.22255 0.90863 1.01627 0.90333 1.22660 1.05399 0.94288 1.00374 1.18119 0.80947 0.89005 0.84023 1.90958 1.53211 1.67203 1.29396 0.92436 0.92779 0.92519 0.91130 0.91527 0.91220 0.90775 0.87397 0.87398 0.75233 0.91647 0.90522 0.92748 0.90451 0.95398 0.91233 0.93673 0.81890 0.81502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.76 16 2 C -0.12 -0.96 5.93 -26.73 -0.16 -1.12 16 3 C -0.13 -1.24 5.54 -26.73 -0.15 -1.39 16 4 C 0.11 1.12 5.55 -4.04 -0.02 1.09 16 5 N -0.33 -4.23 3.22 -63.33 -0.20 -4.44 16 6 N -0.17 -2.35 10.10 33.42 0.34 -2.01 16 7 C 0.02 0.28 6.84 -82.83 -0.57 -0.29 16 8 C 0.58 9.20 7.81 -12.31 -0.10 9.11 16 9 O -0.54 -9.56 16.38 5.32 0.09 -9.47 16 10 N -0.69 -11.12 5.50 -61.24 -0.34 -11.46 16 11 C 0.12 2.02 5.54 -4.04 -0.02 2.00 16 12 C 0.12 2.26 4.33 -66.87 -0.29 1.97 16 13 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 14 C -0.16 -2.68 7.86 -25.80 -0.20 -2.88 16 15 C 0.16 3.57 7.42 -2.97 -0.02 3.55 16 16 N -0.60 -14.08 3.57 -170.74 -0.61 -14.69 16 17 C -0.22 -5.72 10.50 -15.06 -0.16 -5.88 16 18 H 0.08 2.00 7.79 -52.48 -0.41 1.59 16 19 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 20 N -0.92 -26.33 11.51 55.49 0.64 -25.69 16 21 Si 0.90 21.67 29.56 -169.99 -5.02 16.64 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C -0.03 -0.31 9.67 -39.00 -0.38 -0.69 16 26 C -0.20 -2.19 10.11 -39.12 -0.40 -2.58 16 27 C 0.48 6.44 7.47 -15.18 -0.11 6.32 16 28 O -0.53 -8.23 16.62 4.93 0.08 -8.15 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.11 1.12 7.36 -51.93 -0.38 0.74 16 37 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.41 6.57 7.81 -40.82 -0.32 6.25 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.08 1.30 8.10 -51.93 -0.42 0.88 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 1.71 7.36 -51.93 -0.38 1.33 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.16 1.57 7.72 -52.49 -0.41 1.16 16 47 H 0.17 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 396.11 15.07 5.97 5.97 Total: -1.00 -32.06 396.11 -8.73 -40.79 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -7.37 Total: 4.23 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: -2.30 Total: 8.26 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: -0.17 Total: -58.28 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: 0.17 Total: -17.62 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.06 -8.73 -40.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039002364.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.830 kcal (2) G-P(sol) polarization free energy of solvation -32.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds