Wall clock time and date at job start Tue Mar 31 2020 18:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46900 * 2 1 4 4 C 1.52995 * 109.47156 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47213 * 179.97438 * 4 3 2 6 6 N 1.28386 * 119.10509 * 269.72855 * 5 4 3 7 7 C 1.31400 * 122.26993 * 179.74902 * 6 5 4 8 8 C 1.47885 * 119.89789 * 180.26837 * 7 6 5 9 9 O 1.21553 * 120.00156 * 180.24549 * 8 7 6 10 10 N 1.34777 * 119.99565 * 0.25311 * 8 7 6 11 11 C 1.46504 * 119.99890 * 179.97438 * 10 8 7 12 12 C 1.52993 * 109.47209 * 179.97438 * 11 10 8 13 13 H 1.09005 * 112.96446 * 53.32610 * 12 11 10 14 14 C 1.53946 * 113.77085 * 184.99683 * 12 11 10 15 15 C 1.53948 * 86.28885 * 137.90988 * 14 12 11 16 16 N 1.47575 * 113.77330 * 281.49845 * 12 11 10 17 17 C 1.36942 * 134.49505 * 41.05731 * 16 12 11 18 18 H 1.08004 * 119.99466 * 353.48403 * 17 16 12 19 19 C 1.38804 * 120.00144 * 173.49470 * 17 16 12 20 20 N 1.31621 * 120.00139 * 5.06395 * 19 17 16 21 21 Si 1.86801 * 119.99890 * 185.06899 * 19 17 16 22 22 H 1.48498 * 109.47326 * 94.98039 * 21 19 17 23 23 H 1.48504 * 109.47028 * 214.98347 * 21 19 17 24 24 H 1.48497 * 109.47060 * 334.98108 * 21 19 17 25 25 C 1.41584 * 120.20961 * 0.52503 * 7 6 5 26 26 C 1.36321 * 118.24104 * 359.74343 * 25 7 6 27 27 C 1.34609 * 119.10049 * 89.99899 * 5 4 3 28 28 O 1.21985 * 120.22369 * 0.02562 * 27 5 4 29 29 H 1.09000 * 109.46881 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47843 * 300.00279 * 1 2 3 31 31 H 1.09006 * 109.47039 * 60.00740 * 1 2 3 32 32 H 1.08996 * 109.47591 * 240.00169 * 2 1 3 33 33 H 1.08996 * 109.47038 * 119.99272 * 2 1 3 34 34 H 1.09002 * 109.47200 * 59.99101 * 3 2 1 35 35 H 1.09007 * 109.46940 * 299.99964 * 3 2 1 36 36 H 1.08997 * 109.47348 * 299.99949 * 4 3 2 37 37 H 1.09005 * 109.47366 * 60.00029 * 4 3 2 38 38 H 0.97002 * 120.00649 * 359.97438 * 10 8 7 39 39 H 1.08998 * 109.46904 * 300.00441 * 11 10 8 40 40 H 1.09003 * 109.47061 * 59.99645 * 11 10 8 41 41 H 1.08993 * 113.74740 * 252.25825 * 14 12 11 42 42 H 1.08997 * 113.73821 * 23.46497 * 14 12 11 43 43 H 1.09000 * 113.76831 * 90.69904 * 15 14 12 44 44 H 1.08996 * 113.77351 * 221.97926 * 15 14 12 45 45 H 0.96999 * 119.99709 * 180.02562 * 20 19 17 46 46 H 1.08001 * 120.87710 * 179.77661 * 25 7 6 47 47 H 1.08002 * 121.03762 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0582 2.8239 0.0000 6 7 4.2718 3.4102 -1.1220 7 6 4.7049 4.6486 -1.1951 8 6 4.9277 5.2748 -2.5162 9 8 5.3325 6.4188 -2.5860 10 7 4.6816 4.5771 -3.6427 11 6 4.9018 5.1975 -4.9515 12 6 4.5499 4.1983 -6.0553 13 1 3.5487 3.7808 -5.9476 14 6 4.8607 4.7068 -7.4747 15 6 5.3983 3.2919 -7.7557 16 7 5.5961 3.1861 -6.2971 17 6 6.4198 2.4458 -5.4915 18 1 6.4433 2.6308 -4.4277 19 6 7.2246 1.4581 -6.0423 20 7 7.2712 1.2992 -7.3480 21 14 8.2414 0.3540 -4.9302 22 1 7.4941 -0.9007 -4.6610 23 1 9.5284 0.0304 -5.5968 24 1 8.5101 1.0547 -3.6488 25 6 4.9641 5.3836 -0.0131 26 6 4.7471 4.7736 1.1865 27 6 4.2759 3.4418 1.1759 28 8 4.0684 2.8555 2.2253 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 1.6765 1.9564 0.8899 35 1 1.6766 1.9564 -0.8900 36 1 3.9329 0.9290 0.8908 37 1 3.9337 0.9287 -0.8891 38 1 4.3588 3.6640 -3.5870 39 1 4.2702 6.0809 -5.0455 40 1 5.9483 5.4877 -5.0446 41 1 3.9732 4.9620 -8.0536 42 1 5.6255 5.4827 -7.5052 43 1 4.6472 2.6064 -8.1481 44 1 6.3255 3.2800 -8.3287 45 1 7.8334 0.6087 -7.7328 46 1 5.3237 6.4009 -0.0606 47 1 4.9303 5.2920 2.1161 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039002364.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:22 Heat of formation + Delta-G solvation = 18.422784 kcal Electronic energy + Delta-G solvation = -29043.032758 eV Core-core repulsion = 25035.096558 eV Total energy + Delta-G solvation = -4007.936200 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.33799 -40.85873 -39.59437 -38.88739 -37.24157 -35.65728 -35.10543 -34.19428 -32.75520 -30.71546 -29.85844 -29.16315 -26.95284 -25.85480 -25.25075 -24.21651 -23.60847 -22.26504 -22.14662 -20.94241 -19.88957 -19.23643 -18.42033 -17.88580 -17.75205 -17.12439 -17.07248 -16.93732 -16.41367 -16.23089 -15.83299 -15.63961 -15.05000 -14.88644 -14.85840 -14.69166 -14.35079 -14.17011 -14.14773 -13.64918 -13.49950 -13.27384 -12.93417 -12.84338 -12.66400 -12.58155 -12.53466 -12.38766 -12.27529 -12.08788 -11.87264 -11.58917 -11.56211 -11.48573 -11.44039 -11.13435 -10.90786 -10.80792 -10.11981 -9.74048 -8.83306 -7.86070 -5.15571 -0.70227 -0.05158 0.92185 1.42889 1.43956 1.51295 1.63361 2.00418 2.38495 2.48020 2.76137 3.32800 3.42445 3.50552 3.60846 3.68424 3.73218 3.84097 3.99562 4.04108 4.15611 4.27438 4.36080 4.41200 4.46971 4.49807 4.60092 4.68192 4.71350 4.75981 4.81638 4.85098 4.88701 4.92874 4.99270 5.11891 5.15054 5.18168 5.26319 5.37074 5.38693 5.40651 5.65227 5.79069 6.00953 6.26939 6.42143 6.78407 6.98577 7.04443 7.68564 8.64006 9.31658 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008881 B = 0.003730 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3151.874583 B = 7504.480591 C = 8432.871493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.123 4.123 4 C 0.099 3.901 5 N -0.331 5.331 6 N -0.181 5.181 7 C 0.013 3.987 8 C 0.586 3.414 9 O -0.557 6.557 10 N -0.694 5.694 11 C 0.129 3.871 12 C 0.131 3.869 13 H 0.070 0.930 14 C -0.129 4.129 15 C 0.152 3.848 16 N -0.629 5.629 17 C -0.207 4.207 18 H 0.083 0.917 19 C -0.066 4.066 20 N -0.951 5.951 21 Si 0.958 3.042 22 H -0.288 1.288 23 H -0.300 1.300 24 H -0.274 1.274 25 C -0.024 4.024 26 C -0.187 4.187 27 C 0.470 3.530 28 O -0.556 6.556 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.412 0.588 39 H 0.092 0.908 40 H 0.052 0.948 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.021 0.979 44 H 0.034 0.966 45 H 0.245 0.755 46 H 0.183 0.817 47 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.451 4.937 13.294 18.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.162 4.162 4 C -0.020 4.020 5 N -0.152 5.152 6 N -0.012 5.012 7 C -0.158 4.158 8 C 0.369 3.631 9 O -0.435 6.435 10 N -0.343 5.343 11 C 0.005 3.995 12 C 0.025 3.975 13 H 0.087 0.913 14 C -0.168 4.168 15 C 0.027 3.973 16 N -0.355 5.355 17 C -0.336 4.336 18 H 0.101 0.899 19 C -0.259 4.259 20 N -0.601 5.601 21 Si 0.788 3.212 22 H -0.215 1.215 23 H -0.227 1.227 24 H -0.200 1.200 25 C -0.047 4.047 26 C -0.216 4.216 27 C 0.270 3.730 28 O -0.437 6.437 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.248 0.752 39 H 0.110 0.890 40 H 0.070 0.930 41 H 0.112 0.888 42 H 0.100 0.900 43 H 0.039 0.961 44 H 0.053 0.947 45 H 0.054 0.946 46 H 0.200 0.800 47 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -12.302 4.441 13.392 18.719 hybrid contribution 0.988 -0.967 0.833 1.614 sum -11.315 3.474 14.226 18.505 Atomic orbital electron populations 1.21747 0.94831 1.02410 1.01876 1.21431 0.96789 0.94296 1.03147 1.21869 0.92123 0.99546 1.02615 1.22430 0.96565 0.76638 1.06351 1.47065 1.50289 1.15592 1.02265 1.71102 1.06530 1.10638 1.12919 1.21764 1.06994 0.90699 0.96320 1.17364 0.77847 0.85103 0.82776 1.90783 1.47849 1.18002 1.86851 1.45864 1.65034 1.17902 1.05511 1.21720 1.01083 0.96243 0.80440 1.22687 0.92507 0.88493 0.93833 0.91256 1.23571 1.01354 0.96914 0.94911 1.22109 0.96803 0.92451 0.85978 1.46414 1.38986 1.46886 1.03224 1.19241 1.14019 1.09728 0.90614 0.89944 1.25433 1.02616 1.00999 0.96843 1.69997 1.43997 1.35893 1.10224 0.85359 0.77877 0.79653 0.78327 1.21478 1.22749 1.19957 1.22374 0.90655 1.02268 0.89375 1.22900 1.04172 0.93141 1.01436 1.18529 0.80844 0.89824 0.83757 1.90947 1.54602 1.67965 1.30151 0.91599 0.92780 0.92680 0.90836 0.91041 0.92155 0.91130 0.87266 0.86852 0.75162 0.89002 0.93001 0.88783 0.89987 0.96129 0.94743 0.94633 0.79964 0.78777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 71.98 0.71 -1.34 16 2 C -0.12 -1.74 5.93 30.60 0.18 -1.56 16 3 C -0.12 -2.19 5.54 30.59 0.17 -2.02 16 4 C 0.10 2.01 5.55 86.38 0.48 2.49 16 5 N -0.33 -8.04 3.22 -472.47 -1.52 -9.56 16 6 N -0.18 -4.63 10.10 -48.19 -0.49 -5.12 16 7 C 0.01 0.33 6.84 42.59 0.29 0.63 16 8 C 0.59 17.49 7.81 86.80 0.68 18.17 16 9 O -0.56 -18.82 16.38 -3.88 -0.06 -18.88 16 10 N -0.69 -21.09 5.50 -465.93 -2.56 -23.65 16 11 C 0.13 4.05 5.54 86.38 0.48 4.53 16 12 C 0.13 4.44 4.33 45.09 0.20 4.64 16 13 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 14 C -0.13 -4.11 7.86 31.25 0.25 -3.87 16 15 C 0.15 6.69 7.42 86.48 0.64 7.33 16 16 N -0.63 -29.06 3.57 -694.10 -2.48 -31.54 16 17 C -0.21 -10.77 10.50 84.03 0.88 -9.89 16 18 H 0.08 4.13 7.79 -2.91 -0.02 4.10 16 19 C -0.07 -3.65 5.50 84.86 0.47 -3.18 16 20 N -0.95 -56.12 11.51 21.65 0.25 -55.87 16 21 Si 0.96 45.12 29.56 68.60 2.03 47.15 16 22 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 23 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 24 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 25 C -0.02 -0.48 9.67 22.65 0.22 -0.26 16 26 C -0.19 -3.71 10.11 22.57 0.23 -3.48 16 27 C 0.47 11.95 7.47 85.01 0.63 12.58 16 28 O -0.56 -16.74 16.62 -5.27 -0.09 -16.83 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.11 2.20 7.36 -2.39 -0.02 2.18 16 37 H 0.11 2.16 8.14 -2.38 -0.02 2.14 16 38 H 0.41 12.49 7.81 -92.71 -0.72 11.76 16 39 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.08 2.57 8.10 -2.39 -0.02 2.55 16 43 H 0.02 0.93 8.14 -2.39 -0.02 0.92 16 44 H 0.03 1.74 7.36 -2.39 -0.02 1.72 16 45 H 0.24 14.22 8.31 -92.71 -0.77 13.45 16 46 H 0.18 2.99 7.72 -2.91 -0.02 2.97 16 47 H 0.20 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -69.57 396.11 1.83 -67.74 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 0.25 Total: 21.78 kcal Atomic # 6 Polarization: 18.27 SS G_CDS: 6.51 Total: 24.78 kcal Atomic # 7 Polarization: -118.94 SS G_CDS: -6.80 Total: -125.74 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -0.15 Total: -35.71 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -69.57 1.83 -67.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039002364.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.164 kcal (2) G-P(sol) polarization free energy of solvation -69.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds