Wall clock time and date at job start Tue Mar 31 2020 18:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46623 * 2 1 4 4 C 1.52999 * 109.46626 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46691 * 179.97438 * 4 3 2 6 6 N 1.28382 * 119.10241 * 269.72786 * 5 4 3 7 7 C 1.31412 * 122.26431 * 179.75590 * 6 5 4 8 8 C 1.47882 * 119.89124 * 180.25316 * 7 6 5 9 9 O 1.21553 * 119.99791 * 180.26650 * 8 7 6 10 10 N 1.34778 * 120.00596 * 0.26679 * 8 7 6 11 11 C 1.46490 * 120.00503 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47524 * 180.02562 * 11 10 8 13 13 H 1.09003 * 112.73443 * 303.75795 * 12 11 10 14 14 C 1.53497 * 113.47149 * 172.94004 * 12 11 10 15 15 C 1.53498 * 83.34205 * 219.15190 * 14 12 11 16 16 N 1.47063 * 87.98687 * 26.06555 * 15 14 12 17 17 C 1.36938 * 136.05854 * 152.91712 * 16 15 14 18 18 H 1.08001 * 120.00729 * 179.97438 * 17 16 15 19 19 C 1.38823 * 119.99763 * 359.95074 * 17 16 15 20 20 N 1.31617 * 119.99772 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99774 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46814 * 89.99777 * 21 19 17 23 23 H 1.48491 * 109.46756 * 209.99776 * 21 19 17 24 24 H 1.48495 * 109.47026 * 329.99967 * 21 19 17 25 25 C 1.41573 * 120.21501 * 0.51630 * 7 6 5 26 26 C 1.36334 * 118.23457 * 359.75733 * 25 7 6 27 27 C 1.34610 * 119.09916 * 90.00630 * 5 4 3 28 28 O 1.21986 * 120.22425 * 359.94966 * 27 5 4 29 29 H 1.09002 * 109.46716 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47486 * 299.99829 * 1 2 3 31 31 H 1.09001 * 109.47362 * 60.00551 * 1 2 3 32 32 H 1.09000 * 109.47486 * 240.00171 * 2 1 3 33 33 H 1.09001 * 109.47362 * 119.99448 * 2 1 3 34 34 H 1.08993 * 109.46955 * 300.00075 * 3 2 1 35 35 H 1.09000 * 109.47050 * 59.99904 * 3 2 1 36 36 H 1.08993 * 109.47839 * 299.99931 * 4 3 2 37 37 H 1.09000 * 109.47160 * 60.00369 * 4 3 2 38 38 H 0.96998 * 119.99224 * 0.02562 * 10 8 7 39 39 H 1.09006 * 109.46796 * 299.99767 * 11 10 8 40 40 H 1.08999 * 109.47737 * 59.99057 * 11 10 8 41 41 H 1.09002 * 114.20178 * 332.73048 * 14 12 11 42 42 H 1.08994 * 114.20730 * 105.55944 * 14 12 11 43 43 H 1.09000 * 113.46691 * 271.28506 * 15 14 12 44 44 H 1.08997 * 113.46901 * 140.84820 * 15 14 12 45 45 H 0.96993 * 119.99590 * 180.02562 * 20 19 17 46 46 H 1.07999 * 120.88438 * 179.77226 * 25 7 6 47 47 H 1.07996 * 121.03329 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0581 2.8239 0.0000 6 7 4.2717 3.4102 -1.1220 7 6 4.7049 4.6487 -1.1950 8 6 4.9279 5.2747 -2.5161 9 8 5.3332 6.4186 -2.5859 10 7 4.6819 4.5771 -3.6427 11 6 4.9034 5.1970 -4.9514 12 6 4.5499 4.1984 -6.0553 13 1 5.1049 3.2640 -5.9716 14 6 4.5838 4.8070 -7.4641 15 6 3.3418 3.9308 -7.6786 16 7 3.1023 4.0061 -6.2295 17 6 2.0115 3.9298 -5.4052 18 1 2.1349 4.0223 -4.3362 19 6 0.7470 3.7340 -5.9435 20 7 0.5966 3.6212 -7.2462 21 14 -0.7411 3.6307 -4.8190 22 1 -1.3072 4.9892 -4.6212 23 1 -1.7670 2.7517 -5.4353 24 1 -0.3317 3.0691 -3.5067 25 6 4.9640 5.3838 -0.0131 26 6 4.7471 4.7735 1.1865 27 6 4.2759 3.4418 1.1759 28 8 4.0673 2.8559 2.2254 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.6765 1.9563 -0.8899 35 1 1.6765 1.9564 0.8900 36 1 3.9329 0.9290 0.8908 37 1 3.9336 0.9287 -0.8891 38 1 4.3581 3.6644 -3.5869 39 1 4.2726 6.0810 -5.0460 40 1 5.9502 5.4862 -5.0440 41 1 4.3852 5.8784 -7.4929 42 1 5.4480 4.5105 -8.0583 43 1 3.5752 2.9252 -8.0283 44 1 2.5664 4.4148 -8.2724 45 1 -0.2869 3.4848 -7.6223 46 1 5.3237 6.4010 -0.0606 47 1 4.9302 5.2919 2.1161 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039002368.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:27 Heat of formation + Delta-G solvation = 42.915117 kcal Electronic energy + Delta-G solvation = -29305.489284 eV Core-core repulsion = 25298.615151 eV Total energy + Delta-G solvation = -4006.874133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.31541 -39.58532 -38.23602 -37.74856 -36.34272 -34.37775 -34.12069 -32.28142 -31.70466 -29.77326 -28.13068 -27.70168 -25.92943 -24.83398 -23.51115 -23.17011 -22.16286 -21.39457 -20.93962 -19.42307 -18.66156 -18.16801 -16.95520 -16.73244 -16.58452 -16.08639 -15.70520 -15.49960 -15.35102 -14.67361 -14.58137 -14.05476 -14.02002 -13.81728 -13.54404 -13.39690 -13.31761 -13.11019 -12.92441 -12.68288 -11.99954 -11.80918 -11.68950 -11.56722 -11.54038 -11.30371 -11.16184 -11.03410 -10.83065 -10.78012 -10.62298 -10.57843 -10.25030 -10.00111 -9.87575 -9.83859 -9.30262 -8.85690 -8.84743 -8.60505 -6.94400 -5.81193 -3.13648 0.26840 1.01056 1.90444 2.76460 3.21060 3.33666 3.38302 3.40766 3.48133 3.80145 4.38163 4.44018 4.54744 4.57715 4.66825 4.75545 4.84309 5.05111 5.15581 5.18566 5.30987 5.34614 5.38608 5.46221 5.52150 5.55466 5.62642 5.64776 5.70469 5.75614 5.84860 5.86652 5.98112 6.02719 6.04452 6.15992 6.26258 6.35639 6.55034 6.63408 6.76126 7.18713 7.31639 7.34795 7.54109 7.65461 7.86599 7.93287 8.31481 8.98794 9.66084 10.58266 11.36000 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008607 B = 0.004566 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3252.331585 B = 6130.713729 C = 8460.330161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.138 4.138 4 C 0.109 3.891 5 N -0.333 5.333 6 N -0.174 5.174 7 C 0.020 3.980 8 C 0.583 3.417 9 O -0.538 6.538 10 N -0.691 5.691 11 C 0.119 3.881 12 C 0.127 3.873 13 H 0.049 0.951 14 C -0.160 4.160 15 C 0.151 3.849 16 N -0.601 5.601 17 C -0.213 4.213 18 H 0.080 0.920 19 C -0.005 4.005 20 N -0.917 5.917 21 Si 0.905 3.095 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.282 1.282 25 C -0.027 4.027 26 C -0.198 4.198 27 C 0.480 3.520 28 O -0.530 6.530 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.412 0.588 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.059 0.941 43 H 0.025 0.975 44 H 0.072 0.928 45 H 0.253 0.747 46 H 0.163 0.837 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.541 -3.023 11.761 14.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.176 4.176 4 C -0.011 4.011 5 N -0.154 5.154 6 N -0.004 5.004 7 C -0.152 4.152 8 C 0.365 3.635 9 O -0.414 6.414 10 N -0.340 5.340 11 C -0.005 4.005 12 C 0.019 3.981 13 H 0.067 0.933 14 C -0.199 4.199 15 C 0.026 3.974 16 N -0.327 5.327 17 C -0.340 4.340 18 H 0.098 0.902 19 C -0.202 4.202 20 N -0.564 5.564 21 Si 0.736 3.264 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.207 1.207 25 C -0.051 4.051 26 C -0.228 4.228 27 C 0.279 3.721 28 O -0.408 6.408 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.248 0.752 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.077 0.923 43 H 0.043 0.957 44 H 0.090 0.910 45 H 0.063 0.937 46 H 0.181 0.819 47 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 8.076 -3.345 11.871 14.743 hybrid contribution -0.927 -0.014 1.194 1.512 sum 7.149 -3.360 13.066 15.268 Atomic orbital electron populations 1.21762 0.95287 1.01839 1.02237 1.21400 0.96537 0.95187 1.02415 1.21994 0.92991 0.98870 1.03758 1.22205 0.95947 0.77284 1.05626 1.46925 1.50851 1.15123 1.02510 1.71141 1.05784 1.10911 1.12587 1.21904 1.06299 0.90391 0.96573 1.17192 0.78651 0.85367 0.82299 1.90793 1.47346 1.16837 1.86435 1.45864 1.64654 1.18045 1.05467 1.21947 1.00251 0.97710 0.80602 1.22431 0.88199 0.95017 0.92482 0.93338 1.23663 0.99616 1.00663 0.95992 1.22030 0.92780 0.95131 0.87504 1.45682 0.99343 1.84381 1.03248 1.18833 0.83507 1.42814 0.88847 0.90210 1.24746 0.97201 1.02369 0.95886 1.69817 1.21914 1.55347 1.09337 0.86229 0.83045 0.77599 0.79553 1.21598 1.21636 1.20725 1.22254 0.90963 1.01516 0.90334 1.22659 1.05407 0.94319 1.00366 1.18115 0.80959 0.89003 0.84022 1.90958 1.53244 1.67189 1.29394 0.92452 0.92780 0.92249 0.91229 0.91690 0.90346 0.91192 0.87468 0.87636 0.75203 0.90606 0.91755 0.90129 0.92285 0.95724 0.90959 0.93675 0.81899 0.81513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 37.16 0.37 -1.18 16 2 C -0.12 -1.13 5.93 -26.73 -0.16 -1.28 16 3 C -0.14 -1.56 5.54 -26.73 -0.15 -1.71 16 4 C 0.11 1.18 5.55 -4.04 -0.02 1.15 16 5 N -0.33 -4.29 3.22 -63.33 -0.20 -4.50 16 6 N -0.17 -2.37 10.10 33.41 0.34 -2.04 16 7 C 0.02 0.27 6.84 -82.83 -0.57 -0.29 16 8 C 0.58 9.28 7.81 -12.31 -0.10 9.18 16 9 O -0.54 -9.62 16.38 5.32 0.09 -9.53 16 10 N -0.69 -11.23 5.32 -61.24 -0.33 -11.55 16 11 C 0.12 2.00 5.52 -4.05 -0.02 1.98 16 12 C 0.13 2.30 4.10 -72.40 -0.30 2.00 16 13 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 14 C -0.16 -2.75 8.03 -26.22 -0.21 -2.96 16 15 C 0.15 3.32 7.39 -8.51 -0.06 3.26 16 16 N -0.60 -14.02 3.65 -177.01 -0.65 -14.67 16 17 C -0.21 -5.51 10.55 -15.05 -0.16 -5.67 16 18 H 0.08 2.00 7.50 -52.49 -0.39 1.60 16 19 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 20 N -0.92 -26.31 11.51 55.49 0.64 -25.67 16 21 Si 0.91 21.59 29.55 -169.99 -5.02 16.57 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 C -0.03 -0.31 9.67 -39.00 -0.38 -0.69 16 26 C -0.20 -2.21 10.11 -39.12 -0.40 -2.60 16 27 C 0.48 6.50 7.47 -15.18 -0.11 6.38 16 28 O -0.53 -8.30 16.62 4.93 0.08 -8.22 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.11 1.08 7.36 -51.93 -0.38 0.70 16 37 H 0.11 0.99 8.13 -51.93 -0.42 0.57 16 38 H 0.41 6.69 7.71 -40.82 -0.31 6.38 16 39 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.08 1.38 8.12 -51.93 -0.42 0.95 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 1.79 7.12 -51.93 -0.37 1.42 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.16 1.58 7.72 -52.49 -0.41 1.17 16 47 H 0.17 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 395.35 15.07 5.96 5.96 Total: -1.00 -31.85 395.35 -8.79 -40.64 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -7.34 Total: 5.68 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: -2.36 Total: 7.32 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: -0.20 Total: -58.43 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: 0.17 Total: -17.74 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.85 -8.79 -40.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039002368.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.558 kcal (2) G-P(sol) polarization free energy of solvation -31.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds