Wall clock time and date at job start Tue Mar 31 2020 18:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46623 * 2 1 4 4 C 1.52999 * 109.46626 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46691 * 179.97438 * 4 3 2 6 6 N 1.28382 * 119.10241 * 269.72786 * 5 4 3 7 7 C 1.31412 * 122.26431 * 179.75590 * 6 5 4 8 8 C 1.47882 * 119.89124 * 180.25316 * 7 6 5 9 9 O 1.21553 * 119.99791 * 180.26650 * 8 7 6 10 10 N 1.34778 * 120.00596 * 0.26679 * 8 7 6 11 11 C 1.46490 * 120.00503 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47524 * 180.02562 * 11 10 8 13 13 H 1.09003 * 112.73443 * 303.75795 * 12 11 10 14 14 C 1.53497 * 113.47149 * 172.94004 * 12 11 10 15 15 C 1.53498 * 83.34205 * 219.15190 * 14 12 11 16 16 N 1.47063 * 87.98687 * 26.06555 * 15 14 12 17 17 C 1.36938 * 136.05854 * 152.91712 * 16 15 14 18 18 H 1.08001 * 120.00729 * 179.97438 * 17 16 15 19 19 C 1.38823 * 119.99763 * 359.95074 * 17 16 15 20 20 N 1.31617 * 119.99772 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99774 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46814 * 89.99777 * 21 19 17 23 23 H 1.48491 * 109.46756 * 209.99776 * 21 19 17 24 24 H 1.48495 * 109.47026 * 329.99967 * 21 19 17 25 25 C 1.41573 * 120.21501 * 0.51630 * 7 6 5 26 26 C 1.36334 * 118.23457 * 359.75733 * 25 7 6 27 27 C 1.34610 * 119.09916 * 90.00630 * 5 4 3 28 28 O 1.21986 * 120.22425 * 359.94966 * 27 5 4 29 29 H 1.09002 * 109.46716 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47486 * 299.99829 * 1 2 3 31 31 H 1.09001 * 109.47362 * 60.00551 * 1 2 3 32 32 H 1.09000 * 109.47486 * 240.00171 * 2 1 3 33 33 H 1.09001 * 109.47362 * 119.99448 * 2 1 3 34 34 H 1.08993 * 109.46955 * 300.00075 * 3 2 1 35 35 H 1.09000 * 109.47050 * 59.99904 * 3 2 1 36 36 H 1.08993 * 109.47839 * 299.99931 * 4 3 2 37 37 H 1.09000 * 109.47160 * 60.00369 * 4 3 2 38 38 H 0.96998 * 119.99224 * 0.02562 * 10 8 7 39 39 H 1.09006 * 109.46796 * 299.99767 * 11 10 8 40 40 H 1.08999 * 109.47737 * 59.99057 * 11 10 8 41 41 H 1.09002 * 114.20178 * 332.73048 * 14 12 11 42 42 H 1.08994 * 114.20730 * 105.55944 * 14 12 11 43 43 H 1.09000 * 113.46691 * 271.28506 * 15 14 12 44 44 H 1.08997 * 113.46901 * 140.84820 * 15 14 12 45 45 H 0.96993 * 119.99590 * 180.02562 * 20 19 17 46 46 H 1.07999 * 120.88438 * 179.77226 * 25 7 6 47 47 H 1.07996 * 121.03329 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0581 2.8239 0.0000 6 7 4.2717 3.4102 -1.1220 7 6 4.7049 4.6487 -1.1950 8 6 4.9279 5.2747 -2.5161 9 8 5.3332 6.4186 -2.5859 10 7 4.6819 4.5771 -3.6427 11 6 4.9034 5.1970 -4.9514 12 6 4.5499 4.1984 -6.0553 13 1 5.1049 3.2640 -5.9716 14 6 4.5838 4.8070 -7.4641 15 6 3.3418 3.9308 -7.6786 16 7 3.1023 4.0061 -6.2295 17 6 2.0115 3.9298 -5.4052 18 1 2.1349 4.0223 -4.3362 19 6 0.7470 3.7340 -5.9435 20 7 0.5966 3.6212 -7.2462 21 14 -0.7411 3.6307 -4.8190 22 1 -1.3072 4.9892 -4.6212 23 1 -1.7670 2.7517 -5.4353 24 1 -0.3317 3.0691 -3.5067 25 6 4.9640 5.3838 -0.0131 26 6 4.7471 4.7735 1.1865 27 6 4.2759 3.4418 1.1759 28 8 4.0673 2.8559 2.2254 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.6765 1.9563 -0.8899 35 1 1.6765 1.9564 0.8900 36 1 3.9329 0.9290 0.8908 37 1 3.9336 0.9287 -0.8891 38 1 4.3581 3.6644 -3.5869 39 1 4.2726 6.0810 -5.0460 40 1 5.9502 5.4862 -5.0440 41 1 4.3852 5.8784 -7.4929 42 1 5.4480 4.5105 -8.0583 43 1 3.5752 2.9252 -8.0283 44 1 2.5664 4.4148 -8.2724 45 1 -0.2869 3.4848 -7.6223 46 1 5.3237 6.4010 -0.0606 47 1 4.9302 5.2919 2.1161 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039002368.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:26 Heat of formation + Delta-G solvation = 22.348821 kcal Electronic energy + Delta-G solvation = -29306.381106 eV Core-core repulsion = 25298.615151 eV Total energy + Delta-G solvation = -4007.765954 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.33526 -40.89211 -39.75838 -38.88852 -37.25407 -35.64956 -35.11779 -34.22910 -32.75337 -30.73116 -29.92418 -29.12841 -26.95440 -25.85216 -25.35815 -24.17557 -23.52446 -22.28091 -22.15553 -21.03611 -19.90332 -19.23271 -18.45424 -17.88007 -17.74600 -17.15559 -17.04997 -16.93064 -16.44053 -16.21114 -15.85228 -15.63997 -15.02529 -14.90736 -14.85179 -14.67477 -14.35801 -14.17735 -14.16162 -13.67198 -13.54681 -13.29585 -12.96581 -12.84485 -12.72000 -12.60339 -12.53601 -12.41497 -12.29906 -12.13225 -11.85576 -11.62258 -11.60550 -11.49837 -11.44993 -11.05065 -10.87913 -10.80303 -10.10824 -9.73631 -8.85788 -7.85790 -5.16097 -0.70162 -0.04912 0.92783 1.41565 1.43244 1.49861 1.63459 2.01323 2.38585 2.46710 2.76742 3.36530 3.44461 3.50937 3.61233 3.68439 3.71454 3.82535 3.97015 3.99108 4.16765 4.25784 4.34415 4.40247 4.45397 4.48439 4.57123 4.67265 4.69201 4.74068 4.80837 4.83941 4.87627 4.93105 4.96827 5.11106 5.13007 5.14446 5.23031 5.34262 5.36297 5.39518 5.62801 5.79012 6.00204 6.27244 6.42301 6.78586 6.96459 7.04563 7.66996 8.66715 9.31952 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008607 B = 0.004566 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3252.331585 B = 6130.713729 C = 8460.330161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.114 4.114 3 C -0.131 4.131 4 C 0.105 3.895 5 N -0.331 5.331 6 N -0.182 5.182 7 C 0.013 3.987 8 C 0.585 3.415 9 O -0.558 6.558 10 N -0.693 5.693 11 C 0.127 3.873 12 C 0.132 3.868 13 H 0.069 0.931 14 C -0.132 4.132 15 C 0.141 3.859 16 N -0.629 5.629 17 C -0.199 4.199 18 H 0.085 0.915 19 C -0.067 4.067 20 N -0.952 5.952 21 Si 0.957 3.043 22 H -0.295 1.295 23 H -0.297 1.297 24 H -0.268 1.268 25 C -0.024 4.024 26 C -0.187 4.187 27 C 0.470 3.530 28 O -0.555 6.555 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.040 0.960 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.412 0.588 39 H 0.051 0.949 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.022 0.978 44 H 0.035 0.965 45 H 0.244 0.756 46 H 0.183 0.817 47 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.431 -3.145 13.173 17.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.152 4.152 3 C -0.170 4.170 4 C -0.014 4.014 5 N -0.153 5.153 6 N -0.012 5.012 7 C -0.158 4.158 8 C 0.369 3.631 9 O -0.435 6.435 10 N -0.343 5.343 11 C 0.003 3.997 12 C 0.026 3.974 13 H 0.087 0.913 14 C -0.171 4.171 15 C 0.016 3.984 16 N -0.354 5.354 17 C -0.327 4.327 18 H 0.103 0.897 19 C -0.260 4.260 20 N -0.602 5.602 21 Si 0.787 3.213 22 H -0.223 1.223 23 H -0.224 1.224 24 H -0.193 1.193 25 C -0.047 4.047 26 C -0.217 4.217 27 C 0.271 3.729 28 O -0.436 6.436 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.248 0.752 39 H 0.069 0.931 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.118 0.882 43 H 0.039 0.961 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.200 0.800 47 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 10.007 -3.467 13.293 16.996 hybrid contribution -1.444 0.014 0.753 1.629 sum 8.562 -3.453 14.047 16.809 Atomic orbital electron populations 1.21785 0.95738 1.02480 1.01333 1.21406 0.96107 0.94101 1.03580 1.21916 0.93411 0.99725 1.01948 1.22393 0.95483 0.76647 1.06864 1.47075 1.50275 1.15653 1.02260 1.71110 1.06045 1.11130 1.12946 1.21768 1.06896 0.90822 0.96335 1.17373 0.77929 0.85044 0.82790 1.90781 1.48225 1.17646 1.86859 1.45866 1.64816 1.18052 1.05540 1.21776 1.01193 0.96191 0.80540 1.22586 0.85130 0.96048 0.93654 0.91330 1.23475 0.98398 0.99770 0.95452 1.22056 0.94138 0.95702 0.86537 1.45999 1.01265 1.84274 1.03910 1.19136 0.84420 1.39708 0.89462 0.89736 1.25407 0.99641 1.04009 0.96913 1.69986 1.21548 1.57942 1.10727 0.85379 0.80322 0.76910 0.78648 1.22278 1.22394 1.19300 1.22373 0.90783 1.02151 0.89373 1.22905 1.04137 0.93187 1.01424 1.18521 0.80838 0.89811 0.83755 1.90946 1.54597 1.67924 1.30114 0.91061 0.92720 0.94114 0.90552 0.89975 0.92666 0.92367 0.86473 0.86123 0.75207 0.93056 0.89104 0.90005 0.88171 0.96061 0.94659 0.94673 0.79967 0.78759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 9.91 71.98 0.71 -2.29 16 2 C -0.11 -2.03 5.93 30.60 0.18 -1.85 16 3 C -0.13 -2.89 5.54 30.60 0.17 -2.72 16 4 C 0.10 2.13 5.55 86.38 0.48 2.61 16 5 N -0.33 -8.11 3.22 -472.47 -1.52 -9.63 16 6 N -0.18 -4.70 10.10 -48.20 -0.49 -5.19 16 7 C 0.01 0.33 6.84 42.58 0.29 0.62 16 8 C 0.59 17.67 7.81 86.80 0.68 18.35 16 9 O -0.56 -18.95 16.38 -3.88 -0.06 -19.02 16 10 N -0.69 -21.38 5.32 -465.94 -2.48 -23.86 16 11 C 0.13 4.01 5.52 86.38 0.48 4.49 16 12 C 0.13 4.50 4.10 41.79 0.17 4.67 16 13 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 14 C -0.13 -4.22 8.03 30.93 0.25 -3.97 16 15 C 0.14 6.20 7.39 83.18 0.61 6.81 16 16 N -0.63 -29.05 3.65 -713.93 -2.61 -31.66 16 17 C -0.20 -10.31 10.55 84.04 0.89 -9.42 16 18 H 0.08 4.20 7.50 -2.91 -0.02 4.18 16 19 C -0.07 -3.70 5.50 84.87 0.47 -3.23 16 20 N -0.95 -56.29 11.51 21.65 0.25 -56.04 16 21 Si 0.96 45.24 29.55 68.60 2.03 47.27 16 22 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 23 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 25 C -0.02 -0.49 9.67 22.65 0.22 -0.27 16 26 C -0.19 -3.73 10.11 22.57 0.23 -3.50 16 27 C 0.47 11.98 7.47 85.01 0.63 12.61 16 28 O -0.56 -16.66 16.62 -5.27 -0.09 -16.75 16 29 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.12 2.17 7.36 -2.39 -0.02 2.15 16 37 H 0.12 2.06 8.13 -2.39 -0.02 2.04 16 38 H 0.41 12.76 7.71 -92.71 -0.71 12.04 16 39 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 40 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.08 2.62 8.12 -2.39 -0.02 2.60 16 42 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.03 1.79 7.12 -2.39 -0.02 1.78 16 45 H 0.24 14.24 8.31 -92.71 -0.77 13.47 16 46 H 0.18 3.02 7.72 -2.91 -0.02 3.00 16 47 H 0.20 2.71 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -69.83 395.35 1.75 -68.08 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 0.26 Total: 23.90 kcal Atomic # 6 Polarization: 16.44 SS G_CDS: 6.46 Total: 22.90 kcal Atomic # 7 Polarization: -119.53 SS G_CDS: -6.84 Total: -126.37 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -0.15 Total: -35.77 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -69.83 1.75 -68.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039002368.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.425 kcal (2) G-P(sol) polarization free energy of solvation -69.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds