Wall clock time and date at job start Tue Mar 31 2020 17:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47203 * 2 1 4 4 C 1.50697 * 109.47359 * 239.99504 * 2 1 3 5 5 O 1.21276 * 120.00377 * 118.58138 * 4 2 1 6 6 N 1.34780 * 119.99929 * 298.57341 * 4 2 1 7 7 C 1.47128 * 121.05546 * 3.54229 * 6 4 2 8 8 C 1.52766 * 108.97376 * 232.16858 * 7 6 4 9 9 O 1.43108 * 109.42279 * 306.11699 * 8 7 6 10 10 C 1.42490 * 113.96872 * 59.82722 * 9 8 7 11 11 C 1.53466 * 113.76204 * 73.17628 * 10 9 8 12 12 N 1.47667 * 85.97009 * 91.28286 * 11 10 9 13 13 C 1.36936 * 134.45978 * 204.31335 * 12 11 10 14 14 H 1.08000 * 120.00443 * 179.97438 * 13 12 11 15 15 C 1.38813 * 119.99769 * 359.97003 * 13 12 11 16 16 N 1.31617 * 120.00214 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99978 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46894 * 60.00261 * 17 15 13 19 19 H 1.48504 * 109.47008 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47105 * 300.00456 * 17 15 13 21 21 C 1.47677 * 91.08456 * 24.29445 * 12 11 10 22 22 C 1.47340 * 121.05404 * 183.81376 * 6 4 2 23 23 C 1.50703 * 109.46937 * 119.99530 * 2 1 3 24 24 C 1.34667 * 126.59362 * 132.03188 * 23 2 1 25 25 N 1.34128 * 108.02043 * 179.97438 * 24 23 2 26 26 C 1.30498 * 109.25698 * 359.97438 * 25 24 23 27 27 N 1.35042 * 108.69889 * 0.26424 * 26 25 24 28 28 H 0.97004 * 126.39405 * 179.73882 * 27 26 25 29 29 H 1.09002 * 109.47758 * 293.03754 * 1 2 3 30 30 H 1.08999 * 109.47030 * 53.03896 * 1 2 3 31 31 H 1.09004 * 109.47082 * 173.03196 * 1 2 3 32 32 H 1.08995 * 109.47274 * 180.55281 * 3 2 1 33 33 H 1.09008 * 109.46851 * 300.54764 * 3 2 1 34 34 H 1.09000 * 109.47396 * 60.54508 * 3 2 1 35 35 H 1.09005 * 109.59293 * 351.99278 * 7 6 4 36 36 H 1.08994 * 109.59755 * 112.44929 * 7 6 4 37 37 H 1.09007 * 109.56776 * 186.06568 * 8 7 6 38 38 H 1.08993 * 109.34312 * 66.03387 * 8 7 6 39 39 H 1.08999 * 113.79494 * 205.54720 * 11 10 9 40 40 H 1.09006 * 113.79183 * 337.02450 * 11 10 9 41 41 H 0.97001 * 120.00245 * 180.02562 * 16 15 13 42 42 H 1.09003 * 113.78672 * 221.43465 * 21 12 11 43 43 H 1.08996 * 113.89814 * 89.98283 * 21 12 11 44 44 H 1.08995 * 109.75069 * 251.24186 * 22 6 4 45 45 H 1.09002 * 109.74774 * 11.92482 * 22 6 4 46 46 H 1.07995 * 125.98739 * 359.97438 * 24 23 2 47 47 H 1.08003 * 125.64784 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7082 -0.1140 -2.0416 6 7 1.7307 -2.0090 -1.4291 7 6 0.8495 -2.7342 -0.5005 8 6 1.5467 -4.0183 -0.0547 9 8 1.9468 -4.7671 -1.2068 10 6 2.8463 -4.0716 -2.0656 11 6 4.2685 -3.9485 -1.5023 12 7 4.5477 -5.2120 -2.2138 13 6 5.4573 -6.2228 -2.0524 14 1 5.4539 -7.0654 -2.7281 15 6 6.3838 -6.1646 -1.0204 16 7 6.3878 -5.1380 -0.1967 17 14 7.6251 -7.5431 -0.8007 18 1 8.4582 -7.6588 -2.0247 19 1 8.4956 -7.2443 0.3647 20 1 6.9080 -8.8224 -0.5673 21 6 3.4525 -4.9488 -3.1689 22 6 2.2776 -2.7488 -2.5799 23 6 2.0323 -0.7103 1.2306 24 6 2.9824 -1.6636 1.2756 25 7 3.1368 -2.0353 2.5551 26 6 2.3190 -1.3482 3.3046 27 7 1.6073 -0.5136 2.5168 28 1 0.9242 0.1103 2.8083 29 1 -0.3635 0.4022 0.9457 30 1 -0.3633 0.6179 -0.8211 31 1 -0.3633 -1.0201 -0.1247 32 1 3.1299 1.4425 -0.0099 33 1 1.6686 1.9591 -0.8851 34 1 1.6847 1.9535 0.8948 35 1 0.6432 -2.1109 0.3696 36 1 -0.0846 -2.9846 -1.0033 37 1 0.8618 -4.6155 0.5474 38 1 2.4259 -3.7648 0.5376 39 1 4.8227 -3.0938 -1.8900 40 1 4.3206 -4.0344 -0.4168 41 1 7.0355 -5.0971 0.5242 42 1 2.8564 -5.8295 -3.4078 43 1 3.7621 -4.3918 -4.0531 44 1 1.4852 -2.9447 -3.3022 45 1 3.0688 -2.1652 -3.0506 46 1 3.5248 -2.0594 0.4298 47 1 2.2240 -1.4356 4.3769 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053509194.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:41 Heat of formation + Delta-G solvation = 70.145409 kcal Electronic energy + Delta-G solvation = -31638.951885 eV Core-core repulsion = 27633.258547 eV Total energy + Delta-G solvation = -4005.693339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.47777 -40.43013 -38.92330 -36.23673 -35.44751 -34.36732 -32.43162 -32.09189 -29.98381 -28.95477 -27.95906 -27.57223 -26.11269 -25.02314 -23.57685 -23.21555 -22.01857 -21.23662 -20.76927 -19.33157 -18.74526 -18.21202 -16.75219 -16.53860 -16.18899 -15.68798 -15.27146 -15.00027 -14.90785 -14.46395 -14.40823 -14.16696 -13.96293 -13.91400 -13.44822 -13.25910 -13.16345 -12.94905 -12.65305 -12.48654 -12.39052 -12.06674 -11.92704 -11.71691 -11.41544 -11.24362 -11.04184 -10.78132 -10.71906 -10.54649 -10.18086 -9.97141 -9.96218 -9.86781 -9.54748 -9.47640 -9.15926 -8.72370 -8.39330 -8.16383 -6.77748 -5.63369 -2.96358 1.91537 2.47625 2.93733 3.10154 3.21946 3.48684 3.51987 3.54087 4.13660 4.19297 4.36100 4.53911 4.61931 4.73566 4.82550 4.98453 5.07982 5.16176 5.19402 5.26139 5.32547 5.35042 5.43139 5.44731 5.52209 5.59310 5.60363 5.66974 5.75217 5.84055 5.89254 6.04194 6.07026 6.09828 6.21955 6.35468 6.48703 6.56535 6.62740 6.74044 7.08085 7.27406 7.28960 7.43036 7.60564 7.90568 8.08926 8.09729 8.17772 9.15259 9.82180 10.68233 11.53112 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014685 B = 0.004442 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.267784 B = 6301.532396 C = 7137.798881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.002 4.002 3 C -0.125 4.125 4 C 0.534 3.466 5 O -0.530 6.530 6 N -0.601 5.601 7 C 0.064 3.936 8 C 0.041 3.959 9 O -0.341 6.341 10 C 0.049 3.951 11 C 0.150 3.850 12 N -0.601 5.601 13 C -0.223 4.223 14 H 0.079 0.921 15 C -0.005 4.005 16 N -0.916 5.916 17 Si 0.911 3.089 18 H -0.286 1.286 19 H -0.290 1.290 20 H -0.285 1.285 21 C 0.136 3.864 22 C 0.098 3.902 23 C -0.031 4.031 24 C 0.004 3.996 25 N -0.476 5.476 26 C 0.184 3.816 27 N -0.566 5.566 28 H 0.415 0.585 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.031 0.969 40 H 0.080 0.920 41 H 0.254 0.746 42 H 0.055 0.945 43 H 0.049 0.951 44 H 0.070 0.930 45 H 0.102 0.898 46 H 0.172 0.828 47 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.514 13.299 5.012 22.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.007 4.007 3 C -0.182 4.182 4 C 0.320 3.680 5 O -0.406 6.406 6 N -0.334 5.334 7 C -0.059 4.059 8 C -0.037 4.037 9 O -0.259 6.259 10 C 0.007 3.993 11 C 0.024 3.976 12 N -0.327 5.327 13 C -0.351 4.351 14 H 0.097 0.903 15 C -0.202 4.202 16 N -0.563 5.563 17 Si 0.741 3.259 18 H -0.213 1.213 19 H -0.216 1.216 20 H -0.211 1.211 21 C 0.009 3.991 22 C -0.025 4.025 23 C -0.146 4.146 24 C -0.144 4.144 25 N -0.194 5.194 26 C -0.100 4.100 27 N -0.170 5.170 28 H 0.253 0.747 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.119 0.881 36 H 0.090 0.910 37 H 0.113 0.887 38 H 0.093 0.907 39 H 0.049 0.951 40 H 0.098 0.902 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.120 0.880 46 H 0.189 0.811 47 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -16.329 12.612 4.967 21.222 hybrid contribution -0.087 0.420 0.247 0.495 sum -16.417 13.031 5.214 21.599 Atomic orbital electron populations 1.22253 0.92148 1.04109 1.02938 1.19160 0.96691 0.96001 0.88810 1.21687 1.02771 0.91889 1.01890 1.19970 0.79874 0.81461 0.86701 1.90705 1.38435 1.65355 1.46101 1.48066 1.48566 1.09679 1.27077 1.22720 0.93472 0.95430 0.94253 1.22929 0.99976 0.91562 0.89240 1.87926 1.63247 1.40170 1.34514 1.23705 0.91058 0.90407 0.94134 1.22719 0.86932 0.88335 0.99604 1.45718 1.36613 1.19760 1.30604 1.18904 1.07779 0.97297 1.11115 0.90287 1.24761 0.99364 0.98023 0.98014 1.69788 1.37980 1.29847 1.18684 0.86229 0.81072 0.81448 0.77149 1.21287 1.21595 1.21139 1.22479 0.88917 0.95917 0.91746 1.22318 0.99470 0.93038 0.87683 1.20593 1.03989 1.04628 0.85398 1.22405 0.98995 0.97565 0.95460 1.70461 1.21695 1.24793 1.02421 1.25102 0.93778 0.92508 0.98600 1.43131 1.33252 1.33966 1.06638 0.74697 0.91897 0.90978 0.90347 0.91171 0.91138 0.92455 0.88108 0.90961 0.88687 0.90725 0.95117 0.90177 0.93546 0.92701 0.93355 0.91212 0.87994 0.81133 0.77532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 8.09 37.16 0.30 -0.91 16 2 C 0.00 -0.02 0.73 -156.81 -0.11 -0.13 16 3 C -0.12 -1.29 7.74 37.16 0.29 -1.00 16 4 C 0.53 7.95 5.61 -10.99 -0.06 7.88 16 5 O -0.53 -9.60 15.50 5.56 0.09 -9.52 16 6 N -0.60 -8.83 2.50 -172.71 -0.43 -9.26 16 7 C 0.06 0.81 3.93 -3.82 -0.02 0.80 16 8 C 0.04 0.65 6.67 37.04 0.25 0.90 16 9 O -0.34 -6.76 10.52 -35.23 -0.37 -7.13 16 10 C 0.05 0.97 1.21 -90.30 -0.11 0.86 16 11 C 0.15 3.69 6.28 -3.17 -0.02 3.67 16 12 N -0.60 -16.10 3.70 -180.32 -0.67 -16.77 16 13 C -0.22 -6.53 10.70 -15.06 -0.16 -6.69 16 14 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 15 C 0.00 -0.14 5.50 -17.43 -0.10 -0.23 16 16 N -0.92 -28.28 11.39 55.49 0.63 -27.65 16 17 Si 0.91 23.02 29.55 -169.99 -5.02 17.99 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 20 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 21 C 0.14 2.90 8.33 -3.18 -0.03 2.87 16 22 C 0.10 1.61 5.77 -3.64 -0.02 1.59 16 23 C -0.03 -0.37 3.82 -81.60 -0.31 -0.68 16 24 C 0.00 0.07 7.53 -17.81 -0.13 -0.07 16 25 N -0.48 -7.56 11.25 -14.67 -0.17 -7.73 16 26 C 0.18 1.91 13.04 -90.38 -1.18 0.73 16 27 N -0.57 -4.74 6.00 -10.30 -0.06 -4.80 16 28 H 0.42 1.89 8.56 -40.82 -0.35 1.54 16 29 H 0.06 0.33 7.62 -51.93 -0.40 -0.06 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.61 4.78 -51.93 -0.25 0.37 16 32 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 33 H 0.07 0.71 8.10 -51.92 -0.42 0.29 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.10 1.10 3.29 -51.93 -0.17 0.93 16 36 H 0.07 0.80 8.12 -51.93 -0.42 0.37 16 37 H 0.10 1.33 8.14 -51.92 -0.42 0.91 16 38 H 0.07 1.40 4.49 -51.93 -0.23 1.17 16 39 H 0.03 0.80 7.94 -51.93 -0.41 0.39 16 40 H 0.08 2.22 5.95 -51.93 -0.31 1.91 16 41 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 42 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.05 0.95 8.09 -51.93 -0.42 0.53 16 44 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.10 1.80 6.94 -51.93 -0.36 1.44 16 46 H 0.17 3.33 6.02 -52.49 -0.32 3.02 16 47 H 0.21 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 359.60 15.07 5.42 5.42 Total: -1.00 -36.94 359.60 -8.56 -45.50 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -6.56 Total: 4.36 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: -1.41 Total: 9.59 kcal Atomic # 7 Polarization: -65.51 SS G_CDS: -0.69 Total: -66.21 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.28 Total: -16.65 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.94 -8.56 -45.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053509194.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.643 kcal (2) G-P(sol) polarization free energy of solvation -36.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds