Wall clock time and date at job start Tue Mar 31 2020 17:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47246 * 2 1 4 4 C 1.53002 * 109.46967 * 240.00234 * 2 1 3 5 5 C 1.50703 * 109.47135 * 120.00432 * 2 1 3 6 6 N 1.31867 * 118.95268 * 59.99900 * 5 2 1 7 7 C 1.32148 * 120.96712 * 180.02562 * 6 5 2 8 8 C 1.39945 * 118.92307 * 359.97438 * 7 6 5 9 9 C 1.47833 * 120.93890 * 180.02562 * 8 7 6 10 10 O 1.21551 * 119.99751 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99861 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99734 * 179.97438 * 11 9 8 13 13 H 1.09003 * 110.78242 * 36.78905 * 12 11 9 14 14 C 1.54320 * 110.72445 * 273.54851 * 12 11 9 15 15 N 1.47024 * 107.27291 * 263.83330 * 14 12 11 16 16 C 1.36929 * 125.65306 * 181.02130 * 15 14 12 17 17 H 1.08005 * 119.99907 * 14.04986 * 16 15 14 18 18 C 1.38807 * 120.00457 * 194.05224 * 16 15 14 19 19 N 1.31620 * 119.99844 * 8.44559 * 18 16 15 20 20 Si 1.86800 * 120.00264 * 188.44682 * 18 16 15 21 21 H 1.48501 * 109.47290 * 94.84336 * 20 18 16 22 22 H 1.48503 * 109.47352 * 214.84290 * 20 18 16 23 23 H 1.48498 * 109.47058 * 334.83997 * 20 18 16 24 24 C 1.47424 * 108.69923 * 1.28388 * 15 14 12 25 25 C 1.55130 * 104.72643 * 335.55514 * 24 15 14 26 26 H 1.09006 * 111.22402 * 279.18044 * 25 24 15 27 27 O 1.42897 * 110.90726 * 155.27798 * 25 24 15 28 28 C 1.39951 * 118.12282 * 0.27758 * 8 7 6 29 29 N 1.31870 * 118.94683 * 240.02128 * 5 2 1 30 30 H 1.08996 * 109.47086 * 299.99747 * 1 2 3 31 31 H 1.08997 * 109.46849 * 59.99708 * 1 2 3 32 32 H 1.08995 * 109.46946 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47303 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47435 * 299.99933 * 3 2 1 35 35 H 1.08996 * 109.46872 * 60.00122 * 3 2 1 36 36 H 1.09004 * 109.47012 * 300.00000 * 4 2 1 37 37 H 1.08997 * 109.47289 * 60.00326 * 4 2 1 38 38 H 1.09008 * 109.47192 * 179.97438 * 4 2 1 39 39 H 1.08001 * 120.53559 * 179.97438 * 7 6 5 40 40 H 0.97002 * 119.99910 * 0.02562 * 11 9 8 41 41 H 1.08994 * 109.88677 * 144.41309 * 14 12 11 42 42 H 1.09005 * 109.87913 * 23.24386 * 14 12 11 43 43 H 0.97003 * 120.00088 * 180.02562 * 19 18 16 44 44 H 1.09004 * 110.37109 * 94.48721 * 24 15 14 45 45 H 1.09004 * 110.36660 * 216.80988 * 24 15 14 46 46 H 0.96698 * 114.00470 * 67.97911 * 27 25 24 47 47 H 1.07996 * 120.54114 * 179.70325 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2304 6 7 1.7012 -1.9730 1.4185 7 6 2.1191 -2.6342 2.4836 8 6 2.9248 -1.9732 3.4176 9 6 3.4176 -2.6701 4.6246 10 8 3.1243 -3.8340 4.8166 11 7 4.1921 -2.0150 5.5120 12 6 4.6800 -2.7055 6.7084 13 1 4.9226 -3.7441 6.4836 14 6 3.6432 -2.6215 7.8483 15 7 4.0279 -1.4909 8.7059 16 6 3.3746 -1.0920 9.8413 17 1 2.6450 -1.7421 10.3012 18 6 3.6500 0.1480 10.4012 19 7 4.4104 1.0070 9.7561 20 14 2.9415 0.5974 12.0701 21 1 3.9361 0.2900 13.1292 22 1 2.6211 2.0472 12.0978 23 1 1.7041 -0.1876 12.3102 24 6 5.2298 -0.8540 8.1374 25 6 5.9104 -1.9706 7.3028 26 1 6.4945 -2.6372 7.9375 27 8 6.7221 -1.4111 6.2684 28 6 3.2464 -0.6321 3.1794 29 7 2.7887 -0.0497 2.0849 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1301 1.4425 0.0005 34 1 1.6768 1.9563 -0.8899 35 1 1.6767 1.9562 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6767 -0.2073 -2.1392 38 1 3.1301 -0.7208 -1.2496 39 1 1.8433 -3.6680 2.6308 40 1 4.4258 -1.0861 5.3589 41 1 3.6524 -3.5453 8.4266 42 1 2.6495 -2.4510 7.4338 43 1 4.6032 1.8734 10.1475 44 1 4.9492 -0.0170 7.4981 45 1 5.8938 -0.5182 8.9339 46 1 7.5032 -0.9418 6.5917 47 1 3.8615 -0.0830 3.8769 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084121703.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:48 Heat of formation + Delta-G solvation = -13.775278 kcal Electronic energy + Delta-G solvation = -29091.459761 eV Core-core repulsion = 25082.127348 eV Total energy + Delta-G solvation = -4009.332413 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.50675 -39.65508 -37.90638 -36.82300 -35.18644 -34.28817 -33.66878 -32.15755 -31.26261 -28.51597 -27.56472 -27.52963 -27.26381 -25.39177 -24.56271 -24.24798 -21.49409 -20.58994 -20.22226 -19.81349 -18.15714 -17.67506 -16.94359 -16.90733 -16.49958 -15.63999 -15.47139 -14.90706 -14.68605 -14.62072 -14.44506 -14.12132 -14.01971 -13.76311 -13.61267 -13.10079 -12.93017 -12.52228 -12.47909 -12.42074 -12.37143 -11.99942 -11.86159 -11.43074 -11.30829 -11.29151 -11.24240 -11.14486 -11.00155 -10.95822 -10.91518 -10.32357 -10.18808 -9.96467 -9.78621 -9.66417 -9.40881 -9.36467 -8.79578 -8.69364 -6.92927 -5.87870 -3.22825 0.32271 0.89886 2.87344 3.19173 3.33045 3.39388 3.40931 3.53318 3.68552 3.88899 4.29139 4.35415 4.48369 4.62712 4.67346 4.71340 4.74542 4.92235 5.12699 5.16970 5.29728 5.38460 5.40014 5.46136 5.57151 5.58281 5.59405 5.64368 5.69882 5.71350 5.73666 5.87307 6.02825 6.03596 6.08792 6.16226 6.19868 6.34749 6.58118 6.73543 6.85275 7.14247 7.34343 7.63329 7.66035 7.85829 7.93201 8.11193 8.30458 9.05382 9.66609 10.32532 11.25357 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014618 B = 0.002793 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.992892 B =10023.052015 C =10692.597927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.002 4.002 3 C -0.130 4.130 4 C -0.136 4.136 5 C 0.341 3.659 6 N -0.517 5.517 7 C 0.207 3.793 8 C -0.240 4.240 9 C 0.568 3.432 10 O -0.540 6.540 11 N -0.689 5.689 12 C 0.146 3.854 13 H 0.094 0.906 14 C 0.125 3.875 15 N -0.598 5.598 16 C -0.232 4.232 17 H 0.078 0.922 18 C -0.004 4.004 19 N -0.918 5.918 20 Si 0.913 3.087 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.150 3.850 25 C 0.062 3.938 26 H 0.073 0.927 27 O -0.565 6.565 28 C 0.188 3.812 29 N -0.513 5.513 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.181 0.819 40 H 0.405 0.595 41 H 0.038 0.962 42 H 0.034 0.966 43 H 0.254 0.746 44 H 0.039 0.961 45 H 0.068 0.932 46 H 0.380 0.620 47 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.446 -1.921 -18.713 18.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.004 4.004 3 C -0.187 4.187 4 C -0.194 4.194 5 C 0.075 3.925 6 N -0.230 5.230 7 C 0.040 3.960 8 C -0.247 4.247 9 C 0.353 3.647 10 O -0.419 6.419 11 N -0.339 5.339 12 C 0.041 3.959 13 H 0.112 0.888 14 C -0.002 4.002 15 N -0.326 5.326 16 C -0.360 4.360 17 H 0.095 0.905 18 C -0.201 4.201 19 N -0.564 5.564 20 Si 0.743 3.257 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.205 1.205 24 C 0.024 3.976 25 C 0.001 3.999 26 H 0.091 0.909 27 O -0.370 6.370 28 C 0.021 3.979 29 N -0.226 5.226 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.198 0.802 40 H 0.241 0.759 41 H 0.056 0.944 42 H 0.051 0.949 43 H 0.064 0.936 44 H 0.056 0.944 45 H 0.086 0.914 46 H 0.227 0.773 47 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -1.434 -2.364 -19.608 19.802 hybrid contribution 0.544 0.604 2.222 2.366 sum -0.890 -1.760 -17.386 17.498 Atomic orbital electron populations 1.21850 0.92318 1.03049 1.02233 1.19456 0.96428 0.95236 0.89294 1.21733 1.01874 0.93187 1.01943 1.21846 1.01049 1.01021 0.95443 1.23356 0.88002 0.87095 0.94079 1.68284 1.23699 1.09442 1.21558 1.23478 0.86623 1.00122 0.85759 1.21843 1.05477 0.97535 0.99873 1.17704 0.78784 0.86192 0.82063 1.90767 1.58107 1.16222 1.76765 1.45577 1.50247 1.15898 1.22165 1.22039 0.93206 0.96333 0.84331 0.88756 1.21781 0.95658 0.92546 0.90214 1.44297 1.29000 1.32726 1.26532 1.19033 1.19001 0.98895 0.99064 0.90458 1.24881 1.00356 0.95496 0.99394 1.69919 1.41663 1.07389 1.37452 0.86087 0.78602 0.77517 0.83480 1.21502 1.21677 1.20479 1.22031 0.88665 0.91403 0.95510 1.23736 0.90317 0.96912 0.88914 0.90871 1.86337 1.40801 1.75099 1.34782 1.23585 0.91425 0.90548 0.92355 1.68319 1.11767 1.38937 1.03574 0.92587 0.91458 0.91345 0.91847 0.92284 0.91770 0.91356 0.91473 0.92688 0.80173 0.75906 0.94365 0.94851 0.93596 0.94357 0.91389 0.77309 0.80912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 8.37 37.16 0.31 -0.87 16 2 C 0.00 -0.02 0.92 -155.66 -0.14 -0.16 16 3 C -0.13 -1.15 7.66 37.16 0.28 -0.87 16 4 C -0.14 -1.12 8.37 37.16 0.31 -0.81 16 5 C 0.34 4.24 6.25 -157.07 -0.98 3.26 16 6 N -0.52 -6.62 9.77 -10.39 -0.10 -6.72 16 7 C 0.21 2.71 10.88 -16.78 -0.18 2.53 16 8 C -0.24 -3.33 5.91 -104.69 -0.62 -3.95 16 9 C 0.57 9.17 7.78 -12.33 -0.10 9.07 16 10 O -0.54 -10.03 16.18 5.32 0.09 -9.94 16 11 N -0.69 -11.14 4.74 -52.98 -0.25 -11.39 16 12 C 0.15 2.56 3.13 -66.10 -0.21 2.35 16 13 H 0.09 1.61 7.70 -51.93 -0.40 1.21 16 14 C 0.12 2.59 6.98 -3.07 -0.02 2.56 16 15 N -0.60 -14.47 3.39 -169.93 -0.58 -15.04 16 16 C -0.23 -6.24 10.22 -15.06 -0.15 -6.39 16 17 H 0.08 2.05 7.84 -52.48 -0.41 1.64 16 18 C 0.00 -0.11 5.40 -17.43 -0.09 -0.21 16 19 N -0.92 -25.57 10.80 55.49 0.60 -24.97 16 20 Si 0.91 21.45 29.56 -169.99 -5.03 16.43 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 C 0.15 3.26 5.09 -2.41 -0.01 3.24 16 25 C 0.06 1.04 4.23 -24.46 -0.10 0.94 16 26 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 27 O -0.57 -8.21 12.63 -35.23 -0.45 -8.66 16 28 C 0.19 2.44 10.81 -16.77 -0.18 2.26 16 29 N -0.51 -6.73 8.98 -10.39 -0.09 -6.82 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.62 8.01 -51.93 -0.42 0.21 16 33 H 0.06 0.60 8.04 -51.93 -0.42 0.18 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.63 8.04 -51.93 -0.42 0.22 16 36 H 0.07 0.60 8.01 -51.93 -0.42 0.18 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 39 H 0.18 2.12 7.74 -52.49 -0.41 1.71 16 40 H 0.40 6.17 6.34 -40.82 -0.26 5.92 16 41 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.03 0.74 8.04 -51.93 -0.42 0.33 16 43 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 44 H 0.04 0.91 8.00 -51.93 -0.42 0.49 16 45 H 0.07 1.64 7.16 -51.93 -0.37 1.27 16 46 H 0.38 4.10 9.12 45.56 0.42 4.52 16 47 H 0.17 1.97 6.54 -52.49 -0.34 1.62 16 LS Contribution 385.24 15.07 5.81 5.81 Total: -1.00 -31.66 385.24 -8.26 -39.92 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -6.37 Total: 8.43 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: -1.89 Total: 12.97 kcal Atomic # 7 Polarization: -64.52 SS G_CDS: -0.42 Total: -64.94 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.36 Total: -18.60 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.66 -8.26 -39.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084121703.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.145 kcal (2) G-P(sol) polarization free energy of solvation -31.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds