Wall clock time and date at job start Tue Mar 31 2020 17:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47246 * 2 1 4 4 C 1.53002 * 109.46967 * 240.00234 * 2 1 3 5 5 C 1.50703 * 109.47135 * 120.00432 * 2 1 3 6 6 N 1.31867 * 118.95268 * 59.99900 * 5 2 1 7 7 C 1.32148 * 120.96712 * 180.02562 * 6 5 2 8 8 C 1.39945 * 118.92307 * 359.97438 * 7 6 5 9 9 C 1.47833 * 120.93890 * 180.02562 * 8 7 6 10 10 O 1.21551 * 119.99751 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99861 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99734 * 179.97438 * 11 9 8 13 13 H 1.09003 * 110.78242 * 36.78905 * 12 11 9 14 14 C 1.54320 * 110.72445 * 273.54851 * 12 11 9 15 15 N 1.47024 * 107.27291 * 263.83330 * 14 12 11 16 16 C 1.36929 * 125.65306 * 181.02130 * 15 14 12 17 17 H 1.08005 * 119.99907 * 14.04986 * 16 15 14 18 18 C 1.38807 * 120.00457 * 194.05224 * 16 15 14 19 19 N 1.31620 * 119.99844 * 8.44559 * 18 16 15 20 20 Si 1.86800 * 120.00264 * 188.44682 * 18 16 15 21 21 H 1.48501 * 109.47290 * 94.84336 * 20 18 16 22 22 H 1.48503 * 109.47352 * 214.84290 * 20 18 16 23 23 H 1.48498 * 109.47058 * 334.83997 * 20 18 16 24 24 C 1.47424 * 108.69923 * 1.28388 * 15 14 12 25 25 C 1.55130 * 104.72643 * 335.55514 * 24 15 14 26 26 H 1.09006 * 111.22402 * 279.18044 * 25 24 15 27 27 O 1.42897 * 110.90726 * 155.27798 * 25 24 15 28 28 C 1.39951 * 118.12282 * 0.27758 * 8 7 6 29 29 N 1.31870 * 118.94683 * 240.02128 * 5 2 1 30 30 H 1.08996 * 109.47086 * 299.99747 * 1 2 3 31 31 H 1.08997 * 109.46849 * 59.99708 * 1 2 3 32 32 H 1.08995 * 109.46946 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47303 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47435 * 299.99933 * 3 2 1 35 35 H 1.08996 * 109.46872 * 60.00122 * 3 2 1 36 36 H 1.09004 * 109.47012 * 300.00000 * 4 2 1 37 37 H 1.08997 * 109.47289 * 60.00326 * 4 2 1 38 38 H 1.09008 * 109.47192 * 179.97438 * 4 2 1 39 39 H 1.08001 * 120.53559 * 179.97438 * 7 6 5 40 40 H 0.97002 * 119.99910 * 0.02562 * 11 9 8 41 41 H 1.08994 * 109.88677 * 144.41309 * 14 12 11 42 42 H 1.09005 * 109.87913 * 23.24386 * 14 12 11 43 43 H 0.97003 * 120.00088 * 180.02562 * 19 18 16 44 44 H 1.09004 * 110.37109 * 94.48721 * 24 15 14 45 45 H 1.09004 * 110.36660 * 216.80988 * 24 15 14 46 46 H 0.96698 * 114.00470 * 67.97911 * 27 25 24 47 47 H 1.07996 * 120.54114 * 179.70325 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2304 6 7 1.7012 -1.9730 1.4185 7 6 2.1191 -2.6342 2.4836 8 6 2.9248 -1.9732 3.4176 9 6 3.4176 -2.6701 4.6246 10 8 3.1243 -3.8340 4.8166 11 7 4.1921 -2.0150 5.5120 12 6 4.6800 -2.7055 6.7084 13 1 4.9226 -3.7441 6.4836 14 6 3.6432 -2.6215 7.8483 15 7 4.0279 -1.4909 8.7059 16 6 3.3746 -1.0920 9.8413 17 1 2.6450 -1.7421 10.3012 18 6 3.6500 0.1480 10.4012 19 7 4.4104 1.0070 9.7561 20 14 2.9415 0.5974 12.0701 21 1 3.9361 0.2900 13.1292 22 1 2.6211 2.0472 12.0978 23 1 1.7041 -0.1876 12.3102 24 6 5.2298 -0.8540 8.1374 25 6 5.9104 -1.9706 7.3028 26 1 6.4945 -2.6372 7.9375 27 8 6.7221 -1.4111 6.2684 28 6 3.2464 -0.6321 3.1794 29 7 2.7887 -0.0497 2.0849 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1301 1.4425 0.0005 34 1 1.6768 1.9563 -0.8899 35 1 1.6767 1.9562 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6767 -0.2073 -2.1392 38 1 3.1301 -0.7208 -1.2496 39 1 1.8433 -3.6680 2.6308 40 1 4.4258 -1.0861 5.3589 41 1 3.6524 -3.5453 8.4266 42 1 2.6495 -2.4510 7.4338 43 1 4.6032 1.8734 10.1475 44 1 4.9492 -0.0170 7.4981 45 1 5.8938 -0.5182 8.9339 46 1 7.5032 -0.9418 6.5917 47 1 3.8615 -0.0830 3.8769 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084121703.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:47 Heat of formation + Delta-G solvation = -36.454689 kcal Electronic energy + Delta-G solvation = -29092.443214 eV Core-core repulsion = 25082.127348 eV Total energy + Delta-G solvation = -4010.315866 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.53562 -40.99455 -39.33464 -37.65925 -36.64691 -35.60175 -34.90379 -33.74808 -32.59128 -30.18219 -28.89461 -28.27316 -28.18736 -26.71513 -26.01127 -25.41353 -22.77257 -22.29475 -21.44565 -20.92019 -19.42042 -18.95235 -18.58640 -18.18804 -17.48691 -17.12220 -16.68264 -16.47274 -15.93075 -15.84933 -15.63722 -15.47534 -14.89374 -14.78795 -14.67111 -14.59158 -14.53923 -14.06694 -13.89913 -13.23142 -13.18872 -13.12034 -12.96676 -12.84228 -12.80475 -12.65695 -12.56253 -12.15351 -12.06449 -12.05167 -11.94842 -11.92634 -11.86480 -11.79222 -11.10910 -10.85887 -10.72836 -10.70632 -10.41892 -10.15466 -8.89460 -7.92954 -5.29514 -0.73261 -0.12636 1.46257 1.46590 1.55746 1.66050 1.92686 2.45609 2.61590 2.63892 2.91399 3.05927 3.27393 3.31426 3.55088 3.63317 3.75125 3.82526 3.84237 3.97343 3.98939 3.99514 4.29131 4.34777 4.51802 4.56586 4.60266 4.78003 4.79290 4.84203 4.88788 4.89525 4.95250 5.00057 5.01638 5.13540 5.30416 5.31638 5.36299 5.41683 5.48398 5.49157 5.63864 5.72663 6.14191 6.37225 6.84572 6.85152 7.00444 7.05548 7.68500 8.34155 9.18172 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014618 B = 0.002793 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.992892 B =10023.052015 C =10692.597927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.007 4.007 3 C -0.125 4.125 4 C -0.131 4.131 5 C 0.337 3.663 6 N -0.521 5.521 7 C 0.208 3.792 8 C -0.251 4.251 9 C 0.572 3.428 10 O -0.566 6.566 11 N -0.687 5.687 12 C 0.153 3.847 13 H 0.107 0.893 14 C 0.125 3.875 15 N -0.616 5.616 16 C -0.248 4.248 17 H 0.075 0.925 18 C -0.054 4.054 19 N -0.940 5.940 20 Si 0.975 3.025 21 H -0.284 1.284 22 H -0.294 1.294 23 H -0.273 1.273 24 C 0.158 3.842 25 C 0.088 3.912 26 H 0.092 0.908 27 O -0.561 6.561 28 C 0.190 3.810 29 N -0.523 5.523 30 H 0.044 0.956 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.083 0.917 35 H 0.050 0.950 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.048 0.952 39 H 0.191 0.809 40 H 0.409 0.591 41 H 0.045 0.955 42 H 0.015 0.985 43 H 0.250 0.750 44 H 0.014 0.986 45 H 0.040 0.960 46 H 0.399 0.601 47 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.363 -1.951 -20.085 20.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.009 4.009 3 C -0.183 4.183 4 C -0.188 4.188 5 C 0.071 3.929 6 N -0.234 5.234 7 C 0.041 3.959 8 C -0.259 4.259 9 C 0.358 3.642 10 O -0.446 6.446 11 N -0.337 5.337 12 C 0.048 3.952 13 H 0.125 0.875 14 C -0.001 4.001 15 N -0.344 5.344 16 C -0.377 4.377 17 H 0.092 0.908 18 C -0.248 4.248 19 N -0.587 5.587 20 Si 0.803 3.197 21 H -0.211 1.211 22 H -0.221 1.221 23 H -0.198 1.198 24 C 0.032 3.968 25 C 0.027 3.973 26 H 0.109 0.891 27 O -0.368 6.368 28 C 0.023 3.977 29 N -0.236 5.236 30 H 0.063 0.937 31 H 0.111 0.889 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.110 0.890 38 H 0.067 0.933 39 H 0.208 0.792 40 H 0.246 0.754 41 H 0.062 0.938 42 H 0.033 0.967 43 H 0.059 0.941 44 H 0.032 0.968 45 H 0.059 0.941 46 H 0.249 0.751 47 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -1.334 -2.392 -21.002 21.180 hybrid contribution 0.490 0.634 2.583 2.704 sum -0.844 -1.758 -18.420 18.523 Atomic orbital electron populations 1.21837 0.91420 1.02848 1.02936 1.19684 0.97081 0.95490 0.88602 1.21704 1.01337 0.92745 1.02493 1.21825 1.00653 1.00785 0.95578 1.24062 0.87108 0.87114 0.94643 1.68382 1.23878 1.09704 1.21393 1.23691 0.86029 1.00599 0.85555 1.21647 1.06791 0.97944 0.99491 1.17937 0.78065 0.85857 0.82335 1.90747 1.59043 1.17376 1.77481 1.45536 1.50317 1.16094 1.21757 1.21893 0.92360 0.97267 0.83699 0.87496 1.21849 0.95798 0.91548 0.90954 1.44529 1.29823 1.33494 1.26514 1.19322 1.19088 0.99102 1.00185 0.90759 1.25613 1.01113 0.95557 1.02524 1.70083 1.42684 1.07394 1.38584 0.85127 0.78126 0.76752 0.79690 1.21080 1.22067 1.19763 1.21864 0.87802 0.92385 0.94716 1.23336 0.90375 0.94970 0.88624 0.89066 1.86316 1.41441 1.75240 1.33792 1.23794 0.91084 0.90274 0.92505 1.68417 1.12338 1.39056 1.03793 0.93702 0.88938 0.91986 0.92628 0.89849 0.93087 0.91991 0.89010 0.93268 0.79220 0.75397 0.93750 0.96717 0.94071 0.96794 0.94147 0.75062 0.79763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 8.37 71.98 0.60 -1.45 16 2 C -0.01 -0.12 0.92 -52.93 -0.05 -0.16 16 3 C -0.13 -2.01 7.66 71.98 0.55 -1.46 16 4 C -0.13 -1.88 8.37 71.98 0.60 -1.28 16 5 C 0.34 8.06 6.25 138.71 0.87 8.93 16 6 N -0.52 -12.93 9.77 -186.80 -1.82 -14.76 16 7 C 0.21 5.34 10.88 85.06 0.93 6.26 16 8 C -0.25 -6.87 5.91 -19.91 -0.12 -6.99 16 9 C 0.57 18.22 7.78 86.78 0.68 18.90 16 10 O -0.57 -20.80 16.18 -3.88 -0.06 -20.86 16 11 N -0.69 -21.79 4.74 -439.80 -2.08 -23.87 16 12 C 0.15 5.23 3.13 46.18 0.14 5.37 16 13 H 0.11 3.46 7.70 -2.39 -0.02 3.44 16 14 C 0.12 5.18 6.98 86.73 0.61 5.79 16 15 N -0.62 -30.15 3.39 -691.55 -2.35 -32.50 16 16 C -0.25 -13.52 10.22 84.03 0.86 -12.66 16 17 H 0.07 3.98 7.84 -2.91 -0.02 3.96 16 18 C -0.05 -2.93 5.40 84.86 0.46 -2.47 16 19 N -0.94 -53.26 10.80 21.65 0.23 -53.03 16 20 Si 0.97 44.40 29.56 68.60 2.03 46.43 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 23 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 24 C 0.16 6.93 5.09 86.93 0.44 7.37 16 25 C 0.09 2.85 4.23 32.06 0.14 2.99 16 26 H 0.09 2.72 8.14 -2.38 -0.02 2.70 16 27 O -0.56 -15.10 12.63 -148.98 -1.88 -16.98 16 28 C 0.19 4.85 10.81 85.06 0.92 5.77 16 29 N -0.52 -13.38 8.98 -186.79 -1.68 -15.05 16 30 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 1.04 8.01 -2.39 -0.02 1.02 16 33 H 0.05 0.98 8.04 -2.39 -0.02 0.96 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.05 0.95 8.04 -2.39 -0.02 0.93 16 36 H 0.06 0.98 8.01 -2.39 -0.02 0.96 16 37 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 39 H 0.19 4.37 7.74 -2.91 -0.02 4.35 16 40 H 0.41 12.25 6.34 -92.71 -0.59 11.66 16 41 H 0.04 1.78 8.14 -2.39 -0.02 1.77 16 42 H 0.01 0.67 8.04 -2.38 -0.02 0.65 16 43 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 44 H 0.01 0.68 8.00 -2.39 -0.02 0.66 16 45 H 0.04 1.98 7.16 -2.38 -0.02 1.96 16 46 H 0.40 7.66 9.12 -74.06 -0.68 6.99 16 47 H 0.19 4.10 6.54 -2.91 -0.02 4.09 16 Total: -1.00 -68.15 385.24 -0.25 -68.41 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: -0.26 Total: 27.31 kcal Atomic # 6 Polarization: 27.29 SS G_CDS: 7.62 Total: 34.91 kcal Atomic # 7 Polarization: -131.51 SS G_CDS: -7.70 Total: -139.21 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -1.94 Total: -37.84 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -68.15 -0.25 -68.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084121703.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.952 kcal (2) G-P(sol) polarization free energy of solvation -68.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds