Wall clock time and date at job start Tue Mar 31 2020 18:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.46923 * 2 1 4 4 H 1.09004 * 109.87453 * 55.80539 * 3 2 1 5 5 C 1.54325 * 109.88544 * 294.78384 * 3 2 1 6 6 H 1.09001 * 110.71702 * 336.78119 * 5 3 2 7 7 N 1.46500 * 110.71472 * 99.87364 * 5 3 2 8 8 C 1.34785 * 119.99550 * 205.00420 * 7 5 3 9 9 O 1.21583 * 120.00121 * 359.97438 * 8 7 5 10 10 C 1.47532 * 119.99612 * 179.72902 * 8 7 5 11 11 C 1.39796 * 120.98400 * 359.71368 * 10 8 7 12 12 N 1.32190 * 118.98378 * 179.74633 * 11 10 8 13 13 C 1.31935 * 121.13931 * 0.56942 * 12 11 10 14 14 C 1.50693 * 118.90447 * 179.70428 * 13 12 11 15 15 N 1.31730 * 122.19231 * 359.67913 * 13 12 11 16 16 C 1.32769 * 120.87396 * 0.02562 * 15 13 12 17 17 O 1.35284 * 120.61463 * 180.02562 * 16 15 13 18 18 C 1.42899 * 116.99830 * 359.97438 * 17 16 15 19 19 C 1.55157 * 102.94244 * 218.23807 * 5 3 2 20 20 C 1.54907 * 101.58351 * 35.50128 * 19 5 3 21 21 N 1.47032 * 110.00895 * 176.89972 * 3 2 1 22 22 C 1.36935 * 125.64957 * 298.46566 * 21 3 2 23 23 H 1.08004 * 119.99633 * 345.38089 * 22 21 3 24 24 C 1.38809 * 120.00151 * 165.37766 * 22 21 3 25 25 N 1.31625 * 119.99629 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00173 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47071 * 60.00442 * 26 24 22 28 28 H 1.48499 * 109.46992 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.46933 * 300.00358 * 26 24 22 30 30 H 1.09008 * 109.47431 * 305.58149 * 1 2 3 31 31 H 1.08998 * 109.47624 * 65.58414 * 1 2 3 32 32 H 1.09002 * 109.47530 * 185.58394 * 1 2 3 33 33 H 1.08992 * 109.47115 * 239.99797 * 2 1 3 34 34 H 1.09005 * 109.47198 * 119.99954 * 2 1 3 35 35 H 0.96994 * 120.00234 * 25.00515 * 7 5 3 36 36 H 1.08000 * 120.50879 * 0.02562 * 11 10 8 37 37 H 1.08998 * 109.47209 * 269.97665 * 14 13 12 38 38 H 1.09001 * 109.47141 * 29.97658 * 14 13 12 39 39 H 1.08997 * 109.47400 * 149.97811 * 14 13 12 40 40 H 1.09000 * 109.47303 * 60.00358 * 18 17 16 41 41 H 1.09004 * 109.47027 * 179.97438 * 18 17 16 42 42 H 1.08995 * 109.47611 * 300.00264 * 18 17 16 43 43 H 1.09003 * 110.99834 * 153.58136 * 19 5 3 44 44 H 1.08999 * 111.00319 * 277.42552 * 19 5 3 45 45 H 1.08997 * 110.36688 * 204.14685 * 20 19 5 46 46 H 1.09004 * 110.36275 * 81.82522 * 20 19 5 47 47 H 0.97001 * 119.99336 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6202 1.9839 0.8479 5 6 1.6413 2.1401 -1.3176 6 1 1.4661 1.4067 -2.1046 7 7 0.4571 2.9801 -1.1215 8 6 -0.3464 3.2661 -2.1652 9 8 -0.0883 2.8274 -3.2693 10 6 -1.5423 4.1070 -1.9665 11 6 -1.8646 4.6130 -0.7039 12 7 -2.9427 5.3665 -0.5719 13 6 -3.7177 5.6356 -1.6051 14 6 -4.9381 6.4946 -1.3961 15 7 -3.4600 5.1787 -2.8135 16 6 -2.3957 4.4186 -3.0419 17 8 -2.1358 3.9527 -4.2851 18 6 -3.0527 4.3163 -5.3190 19 6 2.8846 3.0106 -1.6398 20 6 4.0370 2.1042 -1.1397 21 7 3.5083 1.4570 0.0747 22 6 4.2602 0.9523 1.1019 23 1 3.7932 0.7125 2.0457 24 6 5.6224 0.7488 0.9300 25 7 6.1915 1.0414 -0.2203 26 14 6.6480 0.0596 2.3309 27 1 6.1305 -1.2794 2.7110 28 1 8.0627 -0.0613 1.8958 29 1 6.5662 0.9720 3.4996 30 1 -0.3634 0.5980 0.8358 31 1 -0.3634 0.4248 -0.9357 32 1 -0.3634 -1.0228 0.1000 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.2514 3.3304 -0.2407 36 1 -1.2399 4.3954 0.1498 37 1 -5.7896 5.8615 -1.1469 38 1 -4.7545 7.1943 -0.5807 39 1 -5.1527 7.0493 -2.3095 40 1 -3.0822 5.4018 -5.4133 41 1 -2.7281 3.8786 -6.2630 42 1 -4.0471 3.9462 -5.0695 43 1 2.9671 3.1923 -2.7114 44 1 2.8580 3.9496 -1.0869 45 1 4.9143 2.7044 -0.8985 46 1 4.2840 1.3550 -1.8919 47 1 7.1434 0.8988 -0.3405 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087595167.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:22 Heat of formation + Delta-G solvation = 1.230212 kcal Electronic energy + Delta-G solvation = -29442.084846 eV Core-core repulsion = 25433.403120 eV Total energy + Delta-G solvation = -4008.681726 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.67861 -39.52386 -38.83304 -37.61066 -34.29830 -33.70577 -33.01151 -32.69624 -31.66305 -29.56960 -28.83374 -27.73086 -26.45101 -24.56449 -24.23452 -23.54534 -22.21306 -20.80619 -20.21633 -19.74620 -18.83749 -18.10345 -17.37034 -16.82168 -16.61798 -15.77390 -15.26267 -15.00309 -14.81947 -14.73456 -14.50458 -14.30840 -13.96939 -13.76123 -13.53729 -13.19529 -12.91444 -12.81562 -12.69197 -12.32745 -12.01129 -11.93610 -11.91188 -11.66899 -11.62984 -11.14999 -10.89105 -10.83666 -10.62890 -10.59125 -10.44813 -10.28556 -10.11013 -9.84777 -9.71661 -9.65535 -9.61766 -9.33585 -8.64654 -8.56065 -6.81191 -5.75587 -3.12112 0.21279 0.81727 2.58000 2.83803 3.17611 3.39254 3.44025 3.44946 3.50686 3.57031 3.68732 4.39519 4.47473 4.54728 4.83658 4.92290 4.97708 5.00385 5.13922 5.17834 5.29507 5.32640 5.35665 5.47885 5.51558 5.54953 5.75601 5.80350 5.84678 5.87078 6.06370 6.22946 6.28292 6.41457 6.44720 6.47151 6.56268 6.68211 6.72982 6.82951 6.94982 7.14228 7.50807 7.59246 7.64049 7.70701 7.78606 8.25813 8.35768 9.17703 9.78710 10.46562 11.36267 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020950 B = 0.002716 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.169495 B =10307.679542 C =10715.382436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.161 3.839 4 H 0.035 0.965 5 C 0.140 3.860 6 H 0.097 0.903 7 N -0.710 5.710 8 C 0.568 3.432 9 O -0.517 6.517 10 C -0.264 4.264 11 C 0.214 3.786 12 N -0.544 5.544 13 C 0.372 3.628 14 C -0.088 4.088 15 N -0.580 5.580 16 C 0.413 3.587 17 O -0.261 6.261 18 C 0.032 3.968 19 C -0.157 4.157 20 C 0.174 3.826 21 N -0.593 5.593 22 C -0.229 4.229 23 H 0.075 0.925 24 C -0.003 4.003 25 N -0.916 5.916 26 Si 0.910 3.090 27 H -0.284 1.284 28 H -0.290 1.290 29 H -0.285 1.285 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.044 0.956 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.394 0.606 36 H 0.179 0.821 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.062 0.938 41 H 0.103 0.897 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.074 0.926 46 H 0.028 0.972 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.500 9.473 -4.257 23.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C 0.053 3.947 4 H 0.052 0.948 5 C 0.035 3.965 6 H 0.115 0.885 7 N -0.361 5.361 8 C 0.352 3.648 9 O -0.393 6.393 10 C -0.273 4.273 11 C 0.049 3.951 12 N -0.263 5.263 13 C 0.106 3.894 14 C -0.147 4.147 15 N -0.311 5.311 16 C 0.225 3.775 17 O -0.162 6.162 18 C -0.064 4.064 19 C -0.196 4.196 20 C 0.049 3.951 21 N -0.318 5.318 22 C -0.357 4.357 23 H 0.092 0.908 24 C -0.200 4.200 25 N -0.563 5.563 26 Si 0.740 3.260 27 H -0.211 1.211 28 H -0.216 1.216 29 H -0.211 1.211 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.229 0.771 36 H 0.196 0.804 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.081 0.919 41 H 0.121 0.879 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.092 0.908 46 H 0.046 0.954 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -21.593 9.452 -5.103 24.117 hybrid contribution 1.054 -0.723 0.879 1.551 sum -20.538 8.729 -4.225 22.713 Atomic orbital electron populations 1.21773 0.97298 1.00506 1.00887 1.22008 0.93519 0.99158 1.02443 1.21081 0.87125 0.93370 0.93154 0.94755 1.22147 0.83000 0.92380 0.98931 0.88545 1.45940 1.26898 1.52466 1.10778 1.17462 0.81811 0.80403 0.85079 1.90834 1.72766 1.51946 1.23740 1.21023 1.01641 1.10254 0.94389 1.23419 0.90863 0.85986 0.94832 1.68301 1.06597 1.17700 1.33680 1.23187 0.94030 0.89700 0.82497 1.20662 0.91677 0.98169 1.04145 1.68064 1.20193 1.16715 1.26172 1.20120 0.86616 0.84637 0.86093 1.86555 1.49083 1.66984 1.13544 1.23065 0.93037 1.01493 0.88761 1.23434 0.96720 0.99051 1.00432 1.21432 0.93076 0.92901 0.87668 1.44434 0.98341 1.68301 1.20727 1.18888 0.89859 1.36106 0.90859 0.90753 1.24910 0.97233 1.00892 0.96958 1.69922 1.10674 1.52727 1.22940 0.86236 0.79405 0.79078 0.81238 1.21090 1.21620 1.21131 0.93471 0.93347 0.93701 0.92338 0.91693 0.77126 0.80401 0.89063 0.88992 0.89408 0.91935 0.87861 0.91940 0.91855 0.92004 0.90787 0.95391 0.93563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.57 37.16 0.36 -1.81 16 2 C -0.13 -2.42 5.42 -26.73 -0.14 -2.56 16 3 C 0.16 3.11 2.93 -66.95 -0.20 2.92 16 4 H 0.03 0.64 7.72 -51.93 -0.40 0.24 16 5 C 0.14 2.47 2.02 -66.10 -0.13 2.34 16 6 H 0.10 1.87 7.19 -51.93 -0.37 1.50 16 7 N -0.71 -10.14 4.86 -53.07 -0.26 -10.40 16 8 C 0.57 8.76 7.78 -12.47 -0.10 8.66 16 9 O -0.52 -9.86 14.96 -15.85 -0.24 -10.10 16 10 C -0.26 -3.46 5.92 -104.57 -0.62 -4.08 16 11 C 0.21 2.27 10.80 -16.82 -0.18 2.09 16 12 N -0.54 -5.89 10.31 -10.44 -0.11 -5.99 16 13 C 0.37 3.81 7.64 -157.13 -1.20 2.61 16 14 C -0.09 -0.53 10.31 36.00 0.37 -0.16 16 15 N -0.58 -6.70 9.26 -10.47 -0.10 -6.80 16 16 C 0.41 5.52 7.54 -16.19 -0.12 5.40 16 17 O -0.26 -3.60 8.73 -38.69 -0.34 -3.94 16 18 C 0.03 0.29 10.41 101.05 1.05 1.34 16 19 C -0.16 -3.02 6.77 -24.58 -0.17 -3.19 16 20 C 0.17 4.16 5.41 -2.53 -0.01 4.14 16 21 N -0.59 -14.41 3.13 -162.57 -0.51 -14.92 16 22 C -0.23 -6.11 9.75 -15.06 -0.15 -6.25 16 23 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 24 C 0.00 -0.08 5.47 -17.43 -0.10 -0.17 16 25 N -0.92 -26.39 10.57 55.49 0.59 -25.81 16 26 Si 0.91 21.65 29.55 -169.99 -5.02 16.62 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 30 H 0.05 0.63 8.14 -51.92 -0.42 0.20 16 31 H 0.05 0.73 7.40 -51.93 -0.38 0.34 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 1.16 8.07 -51.93 -0.42 0.74 16 34 H 0.06 1.28 7.91 -51.93 -0.41 0.87 16 35 H 0.39 4.53 6.50 -40.82 -0.27 4.26 16 36 H 0.18 1.36 6.53 -52.49 -0.34 1.02 16 37 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 41 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.07 1.96 6.93 -51.93 -0.36 1.60 16 46 H 0.03 0.73 8.06 -51.93 -0.42 0.31 16 47 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 384.24 15.07 5.79 5.79 Total: -1.00 -33.05 384.24 -8.68 -41.73 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -7.15 Total: 2.53 kcal Atomic # 6 Polarization: 12.62 SS G_CDS: -1.34 Total: 11.28 kcal Atomic # 7 Polarization: -63.53 SS G_CDS: -0.38 Total: -63.92 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -0.57 Total: -14.04 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.05 -8.68 -41.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087595167.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.958 kcal (2) G-P(sol) polarization free energy of solvation -33.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds