Wall clock time and date at job start Tue Mar 31 2020 18:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.46923 * 2 1 4 4 H 1.09004 * 109.87453 * 55.80539 * 3 2 1 5 5 C 1.54325 * 109.88544 * 294.78384 * 3 2 1 6 6 H 1.09001 * 110.71702 * 336.78119 * 5 3 2 7 7 N 1.46500 * 110.71472 * 99.87364 * 5 3 2 8 8 C 1.34785 * 119.99550 * 205.00420 * 7 5 3 9 9 O 1.21583 * 120.00121 * 359.97438 * 8 7 5 10 10 C 1.47532 * 119.99612 * 179.72902 * 8 7 5 11 11 C 1.39796 * 120.98400 * 359.71368 * 10 8 7 12 12 N 1.32190 * 118.98378 * 179.74633 * 11 10 8 13 13 C 1.31935 * 121.13931 * 0.56942 * 12 11 10 14 14 C 1.50693 * 118.90447 * 179.70428 * 13 12 11 15 15 N 1.31730 * 122.19231 * 359.67913 * 13 12 11 16 16 C 1.32769 * 120.87396 * 0.02562 * 15 13 12 17 17 O 1.35284 * 120.61463 * 180.02562 * 16 15 13 18 18 C 1.42899 * 116.99830 * 359.97438 * 17 16 15 19 19 C 1.55157 * 102.94244 * 218.23807 * 5 3 2 20 20 C 1.54907 * 101.58351 * 35.50128 * 19 5 3 21 21 N 1.47032 * 110.00895 * 176.89972 * 3 2 1 22 22 C 1.36935 * 125.64957 * 298.46566 * 21 3 2 23 23 H 1.08004 * 119.99633 * 345.38089 * 22 21 3 24 24 C 1.38809 * 120.00151 * 165.37766 * 22 21 3 25 25 N 1.31625 * 119.99629 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00173 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47071 * 60.00442 * 26 24 22 28 28 H 1.48499 * 109.46992 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.46933 * 300.00358 * 26 24 22 30 30 H 1.09008 * 109.47431 * 305.58149 * 1 2 3 31 31 H 1.08998 * 109.47624 * 65.58414 * 1 2 3 32 32 H 1.09002 * 109.47530 * 185.58394 * 1 2 3 33 33 H 1.08992 * 109.47115 * 239.99797 * 2 1 3 34 34 H 1.09005 * 109.47198 * 119.99954 * 2 1 3 35 35 H 0.96994 * 120.00234 * 25.00515 * 7 5 3 36 36 H 1.08000 * 120.50879 * 0.02562 * 11 10 8 37 37 H 1.08998 * 109.47209 * 269.97665 * 14 13 12 38 38 H 1.09001 * 109.47141 * 29.97658 * 14 13 12 39 39 H 1.08997 * 109.47400 * 149.97811 * 14 13 12 40 40 H 1.09000 * 109.47303 * 60.00358 * 18 17 16 41 41 H 1.09004 * 109.47027 * 179.97438 * 18 17 16 42 42 H 1.08995 * 109.47611 * 300.00264 * 18 17 16 43 43 H 1.09003 * 110.99834 * 153.58136 * 19 5 3 44 44 H 1.08999 * 111.00319 * 277.42552 * 19 5 3 45 45 H 1.08997 * 110.36688 * 204.14685 * 20 19 5 46 46 H 1.09004 * 110.36275 * 81.82522 * 20 19 5 47 47 H 0.97001 * 119.99336 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6202 1.9839 0.8479 5 6 1.6413 2.1401 -1.3176 6 1 1.4661 1.4067 -2.1046 7 7 0.4571 2.9801 -1.1215 8 6 -0.3464 3.2661 -2.1652 9 8 -0.0883 2.8274 -3.2693 10 6 -1.5423 4.1070 -1.9665 11 6 -1.8646 4.6130 -0.7039 12 7 -2.9427 5.3665 -0.5719 13 6 -3.7177 5.6356 -1.6051 14 6 -4.9381 6.4946 -1.3961 15 7 -3.4600 5.1787 -2.8135 16 6 -2.3957 4.4186 -3.0419 17 8 -2.1358 3.9527 -4.2851 18 6 -3.0527 4.3163 -5.3190 19 6 2.8846 3.0106 -1.6398 20 6 4.0370 2.1042 -1.1397 21 7 3.5083 1.4570 0.0747 22 6 4.2602 0.9523 1.1019 23 1 3.7932 0.7125 2.0457 24 6 5.6224 0.7488 0.9300 25 7 6.1915 1.0414 -0.2203 26 14 6.6480 0.0596 2.3309 27 1 6.1305 -1.2794 2.7110 28 1 8.0627 -0.0613 1.8958 29 1 6.5662 0.9720 3.4996 30 1 -0.3634 0.5980 0.8358 31 1 -0.3634 0.4248 -0.9357 32 1 -0.3634 -1.0228 0.1000 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.2514 3.3304 -0.2407 36 1 -1.2399 4.3954 0.1498 37 1 -5.7896 5.8615 -1.1469 38 1 -4.7545 7.1943 -0.5807 39 1 -5.1527 7.0493 -2.3095 40 1 -3.0822 5.4018 -5.4133 41 1 -2.7281 3.8786 -6.2630 42 1 -4.0471 3.9462 -5.0695 43 1 2.9671 3.1923 -2.7114 44 1 2.8580 3.9496 -1.0869 45 1 4.9143 2.7044 -0.8985 46 1 4.2840 1.3550 -1.8919 47 1 7.1434 0.8988 -0.3405 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087595167.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:21 Heat of formation + Delta-G solvation = -21.277201 kcal Electronic energy + Delta-G solvation = -29443.060840 eV Core-core repulsion = 25433.403120 eV Total energy + Delta-G solvation = -4009.657721 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.55990 -40.85866 -39.71343 -39.15092 -35.69350 -34.85881 -34.19012 -33.83235 -33.35506 -30.94765 -29.98487 -28.63621 -27.86998 -26.34707 -25.07984 -24.58231 -23.58277 -22.30877 -21.70046 -21.29534 -19.71782 -19.03137 -18.71224 -18.52429 -17.50006 -17.23601 -16.64470 -16.10344 -15.94124 -15.76235 -15.65489 -15.59309 -15.45874 -15.27595 -14.77811 -14.35781 -14.20525 -13.78452 -13.52783 -13.46632 -13.25861 -13.22195 -13.05204 -12.86455 -12.67719 -12.65931 -12.59724 -12.53016 -12.21535 -12.04766 -11.98578 -11.89250 -11.55507 -11.42610 -11.35599 -10.96244 -10.64542 -10.60018 -10.30260 -9.94132 -8.80767 -7.83274 -5.21165 -0.65933 -0.04588 1.48781 1.51415 1.57423 1.75531 1.76825 1.97804 2.52899 2.63249 2.76950 2.91738 3.36334 3.47359 3.61298 3.65681 3.85421 3.92682 4.00594 4.16402 4.21821 4.32743 4.33428 4.38647 4.43074 4.62239 4.63654 4.66432 4.72561 4.74330 4.76664 4.87516 4.90925 5.04143 5.15021 5.20772 5.27211 5.30766 5.47207 5.51243 5.59515 5.61791 5.66925 5.73992 5.97972 6.25503 6.49817 6.85604 7.11122 7.18360 7.79035 8.46219 9.27896 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020950 B = 0.002716 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.169495 B =10307.679542 C =10715.382436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.126 4.126 3 C 0.159 3.841 4 H 0.058 0.942 5 C 0.159 3.841 6 H 0.079 0.921 7 N -0.695 5.695 8 C 0.574 3.426 9 O -0.559 6.559 10 C -0.286 4.286 11 C 0.229 3.771 12 N -0.550 5.550 13 C 0.369 3.631 14 C -0.087 4.087 15 N -0.583 5.583 16 C 0.401 3.599 17 O -0.289 6.289 18 C 0.027 3.973 19 C -0.142 4.142 20 C 0.182 3.818 21 N -0.612 5.612 22 C -0.231 4.231 23 H 0.084 0.916 24 C -0.063 4.063 25 N -0.950 5.950 26 Si 0.974 3.026 27 H -0.278 1.278 28 H -0.299 1.299 29 H -0.274 1.274 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.033 0.967 34 H 0.051 0.949 35 H 0.411 0.589 36 H 0.209 0.791 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.069 0.931 41 H 0.118 0.882 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.041 0.959 46 H -0.008 1.008 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.412 10.606 -2.469 26.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.166 4.166 3 C 0.052 3.948 4 H 0.075 0.925 5 C 0.053 3.947 6 H 0.097 0.903 7 N -0.347 5.347 8 C 0.361 3.639 9 O -0.438 6.438 10 C -0.295 4.295 11 C 0.064 3.936 12 N -0.269 5.269 13 C 0.104 3.896 14 C -0.144 4.144 15 N -0.315 5.315 16 C 0.213 3.787 17 O -0.190 6.190 18 C -0.067 4.067 19 C -0.182 4.182 20 C 0.057 3.943 21 N -0.337 5.337 22 C -0.360 4.360 23 H 0.102 0.898 24 C -0.256 4.256 25 N -0.599 5.599 26 Si 0.803 3.197 27 H -0.204 1.204 28 H -0.226 1.226 29 H -0.200 1.200 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.250 0.750 36 H 0.225 0.775 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.117 0.883 40 H 0.087 0.913 41 H 0.136 0.864 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.060 0.940 46 H 0.011 0.989 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -24.579 10.610 -3.280 26.972 hybrid contribution 1.835 -1.020 0.296 2.121 sum -22.744 9.590 -2.984 24.863 Atomic orbital electron populations 1.21655 0.93959 1.01912 1.01676 1.21897 0.96337 0.97754 1.00575 1.21268 0.84446 0.94491 0.94583 0.92471 1.21663 0.83616 0.91902 0.97486 0.90340 1.45628 1.25560 1.51856 1.11690 1.17743 0.82091 0.79800 0.84312 1.90816 1.73876 1.53655 1.25427 1.20844 1.01270 1.11733 0.95682 1.23864 0.90729 0.84485 0.94571 1.68449 1.06768 1.17926 1.33748 1.24066 0.94641 0.88911 0.81935 1.20848 0.90300 0.98060 1.05233 1.68175 1.19668 1.16817 1.26846 1.20365 0.87210 0.84945 0.86138 1.86520 1.50591 1.67469 1.14461 1.23287 0.92878 1.02143 0.88361 1.23244 0.95568 0.98818 1.00521 1.21123 0.93814 0.92290 0.87099 1.44665 1.00547 1.68333 1.20117 1.19276 0.90264 1.34726 0.91768 0.89831 1.25708 0.98619 1.02062 0.99250 1.70139 1.10274 1.54487 1.24950 0.85218 0.77185 0.78633 0.78690 1.20415 1.22559 1.20029 0.91177 0.93616 0.92400 0.94765 0.93052 0.75045 0.77503 0.87360 0.87709 0.88317 0.91255 0.86373 0.91157 0.91688 0.90521 0.94028 0.98946 0.94442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.63 9.57 71.98 0.69 -2.94 16 2 C -0.13 -4.54 5.42 30.59 0.17 -4.37 16 3 C 0.16 6.00 2.93 45.34 0.13 6.13 16 4 H 0.06 1.95 7.72 -2.39 -0.02 1.93 16 5 C 0.16 5.54 2.02 46.18 0.09 5.64 16 6 H 0.08 3.09 7.19 -2.39 -0.02 3.07 16 7 N -0.70 -18.53 4.86 -440.07 -2.14 -20.67 16 8 C 0.57 17.08 7.78 86.69 0.67 17.75 16 9 O -0.56 -21.42 14.96 16.24 0.24 -21.18 16 10 C -0.29 -7.03 5.92 -19.83 -0.12 -7.15 16 11 C 0.23 4.19 10.80 85.02 0.92 5.11 16 12 N -0.55 -10.22 10.31 -186.95 -1.93 -12.15 16 13 C 0.37 6.56 7.64 138.72 1.06 7.62 16 14 C -0.09 -0.76 10.31 71.23 0.73 -0.03 16 15 N -0.58 -12.41 9.26 -299.85 -2.78 -15.19 16 16 C 0.40 10.30 7.54 85.17 0.64 10.94 16 17 O -0.29 -7.89 8.73 -65.48 -0.57 -8.46 16 18 C 0.03 0.48 10.41 113.37 1.18 1.66 16 19 C -0.14 -5.50 6.77 31.99 0.22 -5.28 16 20 C 0.18 9.06 5.41 86.85 0.47 9.53 16 21 N -0.61 -30.06 3.13 -668.25 -2.09 -32.16 16 22 C -0.23 -12.41 9.75 84.03 0.82 -11.59 16 23 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 24 C -0.06 -3.52 5.47 84.86 0.46 -3.06 16 25 N -0.95 -56.91 10.57 21.65 0.23 -56.69 16 26 Si 0.97 45.04 29.55 68.60 2.03 47.07 16 27 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 28 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 29 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 30 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.04 1.27 7.40 -2.39 -0.02 1.26 16 32 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.03 1.37 8.07 -2.39 -0.02 1.35 16 34 H 0.05 1.98 7.91 -2.38 -0.02 1.96 16 35 H 0.41 8.08 6.50 -92.71 -0.60 7.48 16 36 H 0.21 2.32 6.53 -2.91 -0.02 2.30 16 37 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.07 1.08 8.12 -2.39 -0.02 1.06 16 41 H 0.12 1.62 8.14 -2.38 -0.02 1.60 16 42 H 0.07 1.08 8.12 -2.39 -0.02 1.06 16 43 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 45 H 0.04 2.31 6.93 -2.39 -0.02 2.29 16 46 H -0.01 -0.42 8.06 -2.39 -0.02 -0.44 16 47 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -74.51 384.24 1.52 -72.99 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.38 Total: 16.47 kcal Atomic # 6 Polarization: 21.81 SS G_CDS: 8.14 Total: 29.96 kcal Atomic # 7 Polarization: -128.14 SS G_CDS: -8.71 Total: -136.84 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.33 Total: -29.64 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -74.51 1.52 -72.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087595167.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.714 kcal (2) G-P(sol) polarization free energy of solvation -74.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds