Wall clock time and date at job start Tue Mar 31 2020 18:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47293 * 2 1 4 4 H 1.09005 * 109.87361 * 53.85250 * 3 2 1 5 5 C 1.54329 * 109.88030 * 292.84474 * 3 2 1 6 6 H 1.08997 * 110.72050 * 336.74803 * 5 3 2 7 7 N 1.46494 * 110.72276 * 100.02599 * 5 3 2 8 8 C 1.34781 * 120.00133 * 204.99998 * 7 5 3 9 9 O 1.21548 * 119.99810 * 359.97438 * 8 7 5 10 10 C 1.47825 * 120.00195 * 179.97438 * 8 7 5 11 11 C 1.40074 * 121.17863 * 89.71636 * 10 8 7 12 12 C 1.50701 * 121.05704 * 359.97438 * 11 10 8 13 13 C 1.38477 * 117.88435 * 179.73976 * 11 10 8 14 14 C 1.50701 * 119.93765 * 180.26707 * 13 11 10 15 15 N 1.31887 * 120.13407 * 0.54789 * 13 11 10 16 16 N 1.28276 * 122.62391 * 359.71815 * 15 13 11 17 17 C 1.32487 * 122.21771 * 359.97438 * 16 15 13 18 18 O 1.35444 * 120.25299 * 179.97438 * 17 16 15 19 19 C 1.55411 * 102.82636 * 218.47908 * 5 3 2 20 20 C 1.54907 * 101.66541 * 35.33625 * 19 5 3 21 21 N 1.47022 * 109.88638 * 174.87448 * 3 2 1 22 22 C 1.36933 * 125.64871 * 298.39416 * 21 3 2 23 23 H 1.08005 * 119.99784 * 345.36577 * 22 21 3 24 24 C 1.38805 * 120.00264 * 165.36921 * 22 21 3 25 25 N 1.31618 * 120.00128 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00110 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47239 * 60.00064 * 26 24 22 28 28 H 1.48503 * 109.47077 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.47268 * 299.99899 * 26 24 22 30 30 H 1.09005 * 109.47473 * 185.54192 * 1 2 3 31 31 H 1.09001 * 109.47431 * 305.54122 * 1 2 3 32 32 H 1.09002 * 109.47584 * 65.54426 * 1 2 3 33 33 H 1.08997 * 109.47640 * 240.00107 * 2 1 3 34 34 H 1.09003 * 109.47085 * 119.99951 * 2 1 3 35 35 H 0.97009 * 120.00265 * 24.99644 * 7 5 3 36 36 H 1.08997 * 109.47096 * 89.99739 * 12 11 10 37 37 H 1.09004 * 109.46737 * 209.99498 * 12 11 10 38 38 H 1.08995 * 109.47149 * 329.99517 * 12 11 10 39 39 H 1.09004 * 109.46724 * 270.28556 * 14 13 11 40 40 H 1.08998 * 109.46829 * 30.27893 * 14 13 11 41 41 H 1.08995 * 109.47396 * 150.27892 * 14 13 11 42 42 H 0.96706 * 114.00213 * 270.02572 * 18 17 16 43 43 H 1.08998 * 110.88952 * 277.26243 * 19 5 3 44 44 H 1.08997 * 111.03450 * 153.47328 * 19 5 3 45 45 H 1.08998 * 110.36547 * 204.23847 * 20 19 5 46 46 H 1.08999 * 110.36954 * 81.91424 * 20 19 5 47 47 H 0.97001 * 120.00417 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5934 1.9934 0.8278 5 6 1.6837 2.1251 -1.3375 6 1 1.5341 1.3828 -2.1215 7 7 0.4962 2.9699 -1.1881 8 6 -0.2741 3.2451 -2.2593 9 8 0.0167 2.7927 -3.3493 10 6 -1.4727 4.0970 -2.1085 11 6 -1.3969 5.4880 -2.2555 12 6 -0.0889 6.1661 -2.5724 13 6 -2.5629 6.2197 -2.1052 14 6 -2.5355 7.7185 -2.2596 15 7 -3.6965 5.6080 -1.8218 16 7 -3.7790 4.3359 -1.6792 17 6 -2.7269 3.5410 -1.8074 18 8 -2.8593 2.2025 -1.6478 19 6 2.9428 2.9876 -1.6308 20 6 4.0755 2.0853 -1.0809 21 7 3.5049 1.4549 0.1235 22 6 4.2208 0.9619 1.1816 23 1 3.7221 0.7356 2.1124 24 6 5.5875 0.7532 1.0579 25 7 6.1953 1.0287 -0.0766 26 14 6.5642 0.0814 2.5016 27 1 6.0310 -1.2510 2.8828 28 1 7.9923 -0.0484 2.1155 29 1 6.4461 1.0101 3.6542 30 1 -0.3634 -1.0229 0.0992 31 1 -0.3634 0.5974 0.8362 32 1 -0.3634 0.4254 -0.9355 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.2642 3.3312 -0.3182 36 1 0.0326 6.2340 -3.6535 37 1 -0.0856 7.1679 -2.1428 38 1 0.7323 5.5870 -2.1501 39 1 -2.3317 8.1795 -1.2931 40 1 -1.7541 7.9966 -2.9668 41 1 -3.5007 8.0633 -2.6305 42 1 -2.7281 1.8999 -0.7387 43 1 2.9001 3.9337 -1.0913 44 1 3.0616 3.1551 -2.7012 45 1 4.9458 2.6867 -0.8181 46 1 4.3457 1.3259 -1.8146 47 1 7.1505 0.8832 -0.1630 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087681085.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:05 Heat of formation + Delta-G solvation = -26.427006 kcal Electronic energy + Delta-G solvation = -29917.207188 eV Core-core repulsion = 25907.326155 eV Total energy + Delta-G solvation = -4009.881033 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.65586 -41.00258 -39.34479 -38.88335 -36.04338 -35.70285 -34.39217 -33.78607 -33.35685 -30.89012 -29.72209 -29.03536 -28.16396 -26.57700 -25.38811 -23.79874 -23.60871 -22.29880 -21.75831 -21.24660 -20.08562 -19.34220 -18.79824 -18.51196 -17.69240 -17.11964 -16.70696 -15.98111 -15.89876 -15.78391 -15.66487 -15.33852 -15.11016 -14.71303 -14.42304 -14.33713 -14.12452 -13.90007 -13.80220 -13.57802 -13.55797 -13.29845 -13.23912 -12.89593 -12.88425 -12.70741 -12.62453 -12.29518 -12.24386 -12.07258 -12.01598 -11.98179 -11.60038 -11.56063 -11.38578 -11.05015 -10.67246 -10.56367 -10.51800 -10.15371 -8.82650 -7.85416 -5.23110 -0.70608 -0.41833 1.20738 1.47903 1.50028 1.56035 1.77259 2.06228 2.25890 2.50766 2.95922 3.22780 3.27770 3.35633 3.56982 3.62382 3.80234 3.82187 3.87357 4.11991 4.17556 4.33988 4.36441 4.40995 4.55771 4.59058 4.63178 4.66779 4.73589 4.75815 4.78744 4.81719 4.97407 5.00393 5.03239 5.09477 5.21148 5.25273 5.32757 5.43463 5.48683 5.57007 5.62561 5.73189 6.23813 6.27048 6.32248 6.93931 7.09733 7.44736 7.77231 8.43552 9.25473 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018830 B = 0.003062 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.599929 B = 9143.122873 C = 9827.051768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.160 3.840 4 H 0.055 0.945 5 C 0.155 3.845 6 H 0.080 0.920 7 N -0.684 5.684 8 C 0.584 3.416 9 O -0.558 6.558 10 C -0.159 4.159 11 C -0.019 4.019 12 C -0.128 4.128 13 C 0.065 3.935 14 C -0.102 4.102 15 N -0.229 5.229 16 N -0.282 5.282 17 C 0.285 3.715 18 O -0.477 6.477 19 C -0.140 4.140 20 C 0.181 3.819 21 N -0.612 5.612 22 C -0.233 4.233 23 H 0.082 0.918 24 C -0.060 4.060 25 N -0.948 5.948 26 Si 0.972 3.028 27 H -0.280 1.280 28 H -0.298 1.298 29 H -0.275 1.275 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.034 0.966 34 H 0.048 0.952 35 H 0.414 0.586 36 H 0.099 0.901 37 H 0.123 0.877 38 H 0.071 0.929 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.089 0.911 42 H 0.425 0.575 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.043 0.957 46 H -0.008 1.008 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.487 13.382 -1.244 21.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.168 4.168 3 C 0.053 3.947 4 H 0.072 0.928 5 C 0.050 3.950 6 H 0.098 0.902 7 N -0.335 5.335 8 C 0.369 3.631 9 O -0.435 6.435 10 C -0.174 4.174 11 C -0.031 4.031 12 C -0.184 4.184 13 C -0.081 4.081 14 C -0.160 4.160 15 N -0.073 5.073 16 N -0.133 5.133 17 C 0.098 3.902 18 O -0.285 6.285 19 C -0.179 4.179 20 C 0.055 3.945 21 N -0.337 5.337 22 C -0.362 4.362 23 H 0.100 0.900 24 C -0.253 4.253 25 N -0.596 5.596 26 Si 0.801 3.199 27 H -0.206 1.206 28 H -0.225 1.225 29 H -0.201 1.201 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.251 0.749 36 H 0.117 0.883 37 H 0.141 0.859 38 H 0.090 0.910 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.108 0.892 42 H 0.288 0.712 43 H 0.099 0.901 44 H 0.089 0.911 45 H 0.061 0.939 46 H 0.010 0.990 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -17.758 12.982 -2.213 22.108 hybrid contribution 2.441 -1.253 0.988 2.917 sum -15.317 11.729 -1.225 19.331 Atomic orbital electron populations 1.21681 0.93790 1.02125 1.01816 1.21924 0.96632 0.97751 1.00519 1.21241 0.84745 0.94498 0.94189 0.92779 1.21798 0.83555 0.92045 0.97634 0.90182 1.45767 1.25897 1.50629 1.11215 1.17732 0.81687 0.79427 0.84289 1.90839 1.72286 1.52956 1.27425 1.21291 0.94678 0.95412 1.06000 1.21470 0.99214 0.90562 0.91852 1.21161 0.90197 1.02772 1.04309 1.23377 0.88407 1.01176 0.95175 1.20947 1.05752 0.83855 1.05411 1.72770 1.24633 1.01040 1.08834 1.72991 1.26759 0.99289 1.14259 1.20862 0.88175 0.86337 0.94779 1.84737 1.93265 1.14345 1.36182 1.23290 0.94974 0.98886 1.00783 1.21148 0.93813 0.92514 0.87018 1.44656 1.00611 1.69275 1.19127 1.19239 0.90462 1.35345 0.91171 0.90048 1.25664 0.98317 1.01942 0.99407 1.70115 1.09053 1.54546 1.25875 0.85254 0.77161 0.78587 0.78929 1.20570 1.22484 1.20058 0.92344 0.91127 0.93079 0.94736 0.93303 0.74852 0.88266 0.85863 0.90989 0.87397 0.87496 0.89232 0.71228 0.90088 0.91131 0.93877 0.98957 0.94384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 9.64 71.98 0.69 -2.65 16 2 C -0.13 -4.42 5.43 30.59 0.17 -4.25 16 3 C 0.16 5.72 2.91 45.34 0.13 5.85 16 4 H 0.05 1.76 7.71 -2.38 -0.02 1.74 16 5 C 0.16 4.94 2.10 46.27 0.10 5.04 16 6 H 0.08 2.93 7.18 -2.39 -0.02 2.91 16 7 N -0.68 -16.24 4.96 -439.39 -2.18 -18.42 16 8 C 0.58 15.49 5.62 86.78 0.49 15.98 16 9 O -0.56 -19.84 16.75 -3.87 -0.06 -19.91 16 10 C -0.16 -3.59 5.69 -19.75 -0.11 -3.71 16 11 C -0.02 -0.34 5.96 -19.36 -0.12 -0.45 16 12 C -0.13 -1.55 8.92 71.24 0.64 -0.91 16 13 C 0.06 1.07 6.86 42.61 0.29 1.37 16 14 C -0.10 -0.75 9.42 71.24 0.67 -0.08 16 15 N -0.23 -5.23 11.40 -47.73 -0.54 -5.77 16 16 N -0.28 -7.28 11.52 -169.57 -1.95 -9.24 16 17 C 0.29 6.85 7.88 85.13 0.67 7.52 16 18 O -0.48 -10.50 13.09 -87.41 -1.14 -11.64 16 19 C -0.14 -4.89 6.78 32.08 0.22 -4.67 16 20 C 0.18 8.50 5.41 86.85 0.47 8.97 16 21 N -0.61 -28.87 3.13 -668.26 -2.09 -30.96 16 22 C -0.23 -12.19 9.71 84.03 0.82 -11.37 16 23 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 24 C -0.06 -3.25 5.47 84.86 0.46 -2.78 16 25 N -0.95 -55.19 10.57 21.65 0.23 -54.96 16 26 Si 0.97 44.05 29.55 68.60 2.03 46.08 16 27 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 28 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 29 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 30 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.05 1.25 7.48 -2.39 -0.02 1.24 16 33 H 0.03 1.33 8.02 -2.39 -0.02 1.31 16 34 H 0.05 1.84 7.84 -2.39 -0.02 1.82 16 35 H 0.41 7.56 8.35 -92.70 -0.77 6.78 16 36 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.12 0.64 6.83 -2.38 -0.02 0.63 16 38 H 0.07 1.08 7.24 -2.39 -0.02 1.07 16 39 H 0.11 0.43 8.14 -2.38 -0.02 0.41 16 40 H 0.11 0.33 6.80 -2.39 -0.02 0.32 16 41 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.43 5.06 9.06 -74.05 -0.67 4.39 16 43 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.04 2.28 6.93 -2.39 -0.02 2.26 16 46 H -0.01 -0.41 8.06 -2.39 -0.02 -0.43 16 47 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -75.11 384.75 -0.57 -75.67 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -0.43 Total: 15.30 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: 5.59 Total: 13.85 kcal Atomic # 7 Polarization: -112.81 SS G_CDS: -6.54 Total: -119.35 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -1.21 Total: -31.55 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -75.11 -0.57 -75.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087681085.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.247 kcal (2) G-P(sol) polarization free energy of solvation -75.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds