Wall clock time and date at job start Tue Mar 31 2020 18:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47296 * 2 1 4 4 H 1.08999 * 109.99879 * 56.19903 * 3 2 1 5 5 C 1.54329 * 109.88335 * 295.10473 * 3 2 1 6 6 H 1.09002 * 110.87123 * 336.82049 * 5 3 2 7 7 N 1.46496 * 110.72270 * 100.02608 * 5 3 2 8 8 C 1.34768 * 120.00162 * 199.97932 * 7 5 3 9 9 O 1.21279 * 120.00371 * 359.97438 * 8 7 5 10 10 C 1.50705 * 119.99946 * 179.97438 * 8 7 5 11 11 N 1.46500 * 109.46836 * 179.97438 * 10 8 7 12 12 N 1.28384 * 119.17475 * 270.25497 * 11 10 8 13 13 C 1.30405 * 122.45319 * 180.28305 * 12 11 10 14 14 C 1.50704 * 119.76640 * 179.74734 * 13 12 11 15 15 C 1.40474 * 120.46478 * 359.45958 * 13 12 11 16 16 C 1.36597 * 118.31336 * 0.26391 * 15 13 12 17 17 C 1.34670 * 119.17154 * 90.00314 * 11 10 8 18 18 O 1.22070 * 120.34862 * 0.02562 * 17 11 10 19 19 C 1.55163 * 102.94058 * 218.39002 * 5 3 2 20 20 C 1.54910 * 101.58333 * 35.49775 * 19 5 3 21 21 N 1.47020 * 109.88544 * 177.29567 * 3 2 1 22 22 C 1.36940 * 125.64611 * 298.32644 * 21 3 2 23 23 H 1.08003 * 120.00084 * 348.12044 * 22 21 3 24 24 C 1.38808 * 120.00190 * 168.12449 * 22 21 3 25 25 N 1.31630 * 119.99780 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00396 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47393 * 89.99625 * 26 24 22 28 28 H 1.48497 * 109.47237 * 210.00079 * 26 24 22 29 29 H 1.48508 * 109.46807 * 329.99530 * 26 24 22 30 30 H 1.09003 * 109.47190 * 65.49022 * 1 2 3 31 31 H 1.09000 * 109.47435 * 185.49279 * 1 2 3 32 32 H 1.08996 * 109.47518 * 305.49062 * 1 2 3 33 33 H 1.09006 * 109.46927 * 240.00275 * 2 1 3 34 34 H 1.08996 * 109.47433 * 120.00142 * 2 1 3 35 35 H 0.97008 * 119.99891 * 19.97191 * 7 5 3 36 36 H 1.08995 * 109.47058 * 59.99790 * 10 8 7 37 37 H 1.08997 * 109.47383 * 299.99308 * 10 8 7 38 38 H 1.09001 * 109.46779 * 269.71636 * 14 13 12 39 39 H 1.09006 * 109.47205 * 149.72307 * 14 13 12 40 40 H 1.08990 * 109.47381 * 29.72078 * 14 13 12 41 41 H 1.08004 * 120.84022 * 180.27895 * 15 13 12 42 42 H 1.07997 * 121.09183 * 179.97438 * 16 15 13 43 43 H 1.08998 * 111.00094 * 153.57748 * 19 5 3 44 44 H 1.09003 * 110.99746 * 277.38865 * 19 5 3 45 45 H 1.09004 * 110.36306 * 81.82743 * 20 19 5 46 46 H 1.08995 * 110.36638 * 204.04286 * 20 19 5 47 47 H 0.97000 * 119.99651 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6270 1.9839 0.8511 5 6 1.6344 2.1426 -1.3142 6 1 1.4537 1.4127 -2.1033 7 7 0.4535 2.9851 -1.1097 8 6 -0.2991 3.3577 -2.1637 9 8 0.0013 2.9959 -3.2816 10 6 -1.5143 4.2239 -1.9532 11 7 -2.1554 4.4876 -3.2438 12 7 -1.7939 5.5148 -3.9239 13 6 -2.3251 5.8130 -5.0768 14 6 -1.8585 7.0374 -5.8214 15 6 -3.3250 4.9977 -5.6325 16 6 -3.7252 3.8951 -4.9325 17 6 -3.1056 3.6437 -3.6894 18 8 -3.4280 2.6717 -3.0250 19 6 2.8777 3.0106 -1.6435 20 6 4.0312 2.1009 -1.1518 21 7 3.5087 1.4536 0.0652 22 6 4.2660 0.9470 1.0876 23 1 3.7972 0.6669 2.0194 24 6 5.6361 0.7937 0.9264 25 7 6.2074 1.1347 -0.2094 26 14 6.6691 0.1021 2.3207 27 1 6.7400 -1.3761 2.1982 28 1 8.0390 0.6709 2.2511 29 1 6.0493 0.4619 3.6214 30 1 -0.3634 0.4263 -0.9351 31 1 -0.3634 -1.0229 0.0984 32 1 -0.3634 0.5966 0.8367 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 0.2133 3.2746 -0.2156 36 1 -1.2134 5.1673 -1.4978 37 1 -2.2168 3.7110 -1.2963 38 1 -2.4659 7.8939 -5.5289 39 1 -1.9583 6.8705 -6.8940 40 1 -0.8139 7.2333 -5.5799 41 1 -3.7660 5.2365 -6.5891 42 1 -4.4907 3.2377 -5.3174 43 1 2.9538 3.1932 -2.7153 44 1 2.8564 3.9493 -1.0898 45 1 4.2716 1.3520 -1.9064 46 1 4.9120 2.6986 -0.9173 47 1 7.1648 1.0272 -0.3221 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087805292.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:38 Heat of formation + Delta-G solvation = 20.352913 kcal Electronic energy + Delta-G solvation = -29385.452224 eV Core-core repulsion = 25377.599720 eV Total energy + Delta-G solvation = -4007.852503 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.28861 -39.71249 -38.03132 -37.74267 -35.44287 -34.09285 -32.78215 -32.21899 -31.79964 -30.43537 -28.96006 -27.47581 -26.33534 -24.67330 -24.08904 -23.54558 -22.23209 -20.78734 -20.18596 -19.67032 -18.49536 -17.63881 -17.55126 -16.84653 -16.64614 -15.97640 -15.63647 -15.08120 -14.89894 -14.68737 -14.05210 -14.01687 -13.88996 -13.82545 -13.75370 -13.23115 -13.15157 -12.83091 -12.71113 -12.56319 -12.44146 -11.97082 -11.92856 -11.64159 -11.41478 -11.15043 -10.89923 -10.85738 -10.81104 -10.60892 -10.45316 -10.30734 -10.08612 -9.92420 -9.82948 -9.67622 -9.64343 -8.71403 -8.60746 -8.58797 -6.84062 -5.74956 -3.11646 0.29849 1.41958 1.89087 2.62452 3.05001 3.37791 3.40339 3.44422 3.45529 3.82340 4.27002 4.44332 4.46293 4.59657 4.67620 4.81464 4.92102 5.14936 5.23552 5.24465 5.34695 5.35965 5.41350 5.50226 5.54427 5.56727 5.75995 5.78741 5.79864 5.85889 5.92254 6.07129 6.22165 6.26488 6.41228 6.47557 6.55380 6.66963 6.71710 6.93731 7.11989 7.41871 7.51357 7.56933 7.62172 7.78708 7.97655 8.23740 8.28131 9.17223 9.78218 10.44954 11.36007 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023115 B = 0.002623 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.035580 B =10670.237644 C =11489.862054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.162 3.838 4 H 0.036 0.964 5 C 0.140 3.860 6 H 0.091 0.909 7 N -0.707 5.707 8 C 0.505 3.495 9 O -0.531 6.531 10 C 0.092 3.908 11 N -0.326 5.326 12 N -0.214 5.214 13 C 0.055 3.945 14 C -0.085 4.085 15 C -0.065 4.065 16 C -0.185 4.185 17 C 0.482 3.518 18 O -0.532 6.532 19 C -0.155 4.155 20 C 0.172 3.828 21 N -0.594 5.594 22 C -0.226 4.226 23 H 0.076 0.924 24 C -0.005 4.005 25 N -0.918 5.918 26 Si 0.911 3.089 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.281 1.281 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.047 0.953 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.399 0.601 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.151 0.849 42 H 0.163 0.837 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.025 0.975 46 H 0.080 0.920 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.774 12.395 -8.731 24.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C 0.054 3.946 4 H 0.054 0.946 5 C 0.036 3.964 6 H 0.109 0.891 7 N -0.359 5.359 8 C 0.288 3.712 9 O -0.407 6.407 10 C -0.033 4.033 11 N -0.145 5.145 12 N -0.037 5.037 13 C -0.116 4.116 14 C -0.144 4.144 15 C -0.088 4.088 16 C -0.215 4.215 17 C 0.281 3.719 18 O -0.410 6.410 19 C -0.195 4.195 20 C 0.047 3.953 21 N -0.319 5.319 22 C -0.355 4.355 23 H 0.094 0.906 24 C -0.202 4.202 25 N -0.564 5.564 26 Si 0.742 3.258 27 H -0.215 1.215 28 H -0.217 1.217 29 H -0.207 1.207 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.234 0.766 36 H 0.147 0.853 37 H 0.151 0.849 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.169 0.831 42 H 0.180 0.820 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.043 0.957 46 H 0.098 0.902 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.848 11.752 -8.427 23.756 hybrid contribution -0.096 -0.797 0.585 0.993 sum -18.944 10.955 -7.842 23.246 Atomic orbital electron populations 1.21770 0.97103 1.00635 1.00977 1.22019 0.93664 0.99092 1.02395 1.21056 0.87069 0.93376 0.93105 0.94607 1.22138 0.83203 0.92288 0.98820 0.89066 1.45950 1.28254 1.52348 1.09302 1.20395 0.84035 0.81139 0.85596 1.90738 1.71143 1.55231 1.23545 1.21785 0.95487 1.02829 0.83184 1.46026 1.31211 1.18991 1.18232 1.70692 1.20439 1.05192 1.07422 1.21842 0.97426 1.00104 0.92240 1.20522 1.02889 0.92285 0.98707 1.22297 0.93801 0.92612 1.00118 1.22720 1.03606 1.00224 0.94991 1.18029 0.81208 0.84003 0.88701 1.90997 1.64144 1.27277 1.58554 1.23423 0.96655 0.99065 1.00343 1.21485 0.93362 0.92960 0.87461 1.44458 0.98291 1.68382 1.20759 1.18957 0.89100 1.35530 0.91891 0.90607 1.24875 0.97005 1.01131 0.97171 1.69930 1.10093 1.52624 1.23797 0.86137 0.79739 0.78801 0.81169 1.21545 1.21686 1.20657 0.93300 0.93628 0.93405 0.92400 0.91690 0.76621 0.85266 0.84914 0.90197 0.90033 0.90079 0.83085 0.81983 0.91974 0.91968 0.95726 0.90162 0.93635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.57 37.15 0.36 -1.93 16 2 C -0.13 -2.49 5.41 -26.74 -0.14 -2.64 16 3 C 0.16 3.21 2.94 -66.95 -0.20 3.01 16 4 H 0.04 0.68 7.69 -51.93 -0.40 0.28 16 5 C 0.14 2.54 1.92 -66.09 -0.13 2.42 16 6 H 0.09 1.85 7.34 -51.93 -0.38 1.47 16 7 N -0.71 -10.14 4.93 -52.03 -0.26 -10.40 16 8 C 0.50 7.65 7.89 -10.99 -0.09 7.56 16 9 O -0.53 -10.38 16.16 5.56 0.09 -10.29 16 10 C 0.09 1.04 6.04 -5.19 -0.03 1.01 16 11 N -0.33 -4.20 2.71 -64.52 -0.17 -4.38 16 12 N -0.21 -2.49 10.81 33.73 0.36 -2.12 16 13 C 0.05 0.48 6.88 -82.35 -0.57 -0.09 16 14 C -0.09 -0.44 10.18 36.01 0.37 -0.07 16 15 C -0.06 -0.48 9.84 -39.33 -0.39 -0.87 16 16 C -0.19 -1.87 10.13 -39.07 -0.40 -2.26 16 17 C 0.48 6.72 7.47 -15.20 -0.11 6.61 16 18 O -0.53 -9.04 16.65 4.86 0.08 -8.96 16 19 C -0.16 -3.06 6.77 -24.58 -0.17 -3.22 16 20 C 0.17 4.18 5.46 -2.53 -0.01 4.17 16 21 N -0.59 -14.65 3.13 -162.58 -0.51 -15.15 16 22 C -0.23 -6.11 9.77 -15.06 -0.15 -6.26 16 23 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 24 C -0.01 -0.14 5.47 -17.43 -0.10 -0.24 16 25 N -0.92 -26.61 10.47 55.49 0.58 -26.03 16 26 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 29 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 30 H 0.05 0.79 7.38 -51.93 -0.38 0.40 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 34 H 0.06 1.30 7.91 -51.93 -0.41 0.89 16 35 H 0.40 4.51 8.31 -40.82 -0.34 4.17 16 36 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.13 1.33 7.37 -51.93 -0.38 0.95 16 38 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.08 0.25 8.09 -51.93 -0.42 -0.17 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.15 0.50 8.06 -52.48 -0.42 0.08 16 42 H 0.16 1.28 8.06 -52.49 -0.42 0.85 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.02 0.65 8.11 -51.93 -0.42 0.23 16 46 H 0.08 2.15 6.73 -51.93 -0.35 1.80 16 47 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 387.72 15.07 5.84 5.84 Total: -1.00 -36.09 387.72 -8.01 -44.10 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -7.26 Total: 3.38 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: -1.75 Total: 7.21 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: 0.01 Total: -58.08 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: 0.17 Total: -19.24 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.09 -8.01 -44.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087805292.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.451 kcal (2) G-P(sol) polarization free energy of solvation -36.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds