Wall clock time and date at job start Tue Mar 31 2020 18:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47296 * 2 1 4 4 H 1.08999 * 109.99879 * 56.19903 * 3 2 1 5 5 C 1.54329 * 109.88335 * 295.10473 * 3 2 1 6 6 H 1.09002 * 110.87123 * 336.82049 * 5 3 2 7 7 N 1.46496 * 110.72270 * 100.02608 * 5 3 2 8 8 C 1.34768 * 120.00162 * 199.97932 * 7 5 3 9 9 O 1.21279 * 120.00371 * 359.97438 * 8 7 5 10 10 C 1.50705 * 119.99946 * 179.97438 * 8 7 5 11 11 N 1.46500 * 109.46836 * 179.97438 * 10 8 7 12 12 N 1.28384 * 119.17475 * 270.25497 * 11 10 8 13 13 C 1.30405 * 122.45319 * 180.28305 * 12 11 10 14 14 C 1.50704 * 119.76640 * 179.74734 * 13 12 11 15 15 C 1.40474 * 120.46478 * 359.45958 * 13 12 11 16 16 C 1.36597 * 118.31336 * 0.26391 * 15 13 12 17 17 C 1.34670 * 119.17154 * 90.00314 * 11 10 8 18 18 O 1.22070 * 120.34862 * 0.02562 * 17 11 10 19 19 C 1.55163 * 102.94058 * 218.39002 * 5 3 2 20 20 C 1.54910 * 101.58333 * 35.49775 * 19 5 3 21 21 N 1.47020 * 109.88544 * 177.29567 * 3 2 1 22 22 C 1.36940 * 125.64611 * 298.32644 * 21 3 2 23 23 H 1.08003 * 120.00084 * 348.12044 * 22 21 3 24 24 C 1.38808 * 120.00190 * 168.12449 * 22 21 3 25 25 N 1.31630 * 119.99780 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00396 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47393 * 89.99625 * 26 24 22 28 28 H 1.48497 * 109.47237 * 210.00079 * 26 24 22 29 29 H 1.48508 * 109.46807 * 329.99530 * 26 24 22 30 30 H 1.09003 * 109.47190 * 65.49022 * 1 2 3 31 31 H 1.09000 * 109.47435 * 185.49279 * 1 2 3 32 32 H 1.08996 * 109.47518 * 305.49062 * 1 2 3 33 33 H 1.09006 * 109.46927 * 240.00275 * 2 1 3 34 34 H 1.08996 * 109.47433 * 120.00142 * 2 1 3 35 35 H 0.97008 * 119.99891 * 19.97191 * 7 5 3 36 36 H 1.08995 * 109.47058 * 59.99790 * 10 8 7 37 37 H 1.08997 * 109.47383 * 299.99308 * 10 8 7 38 38 H 1.09001 * 109.46779 * 269.71636 * 14 13 12 39 39 H 1.09006 * 109.47205 * 149.72307 * 14 13 12 40 40 H 1.08990 * 109.47381 * 29.72078 * 14 13 12 41 41 H 1.08004 * 120.84022 * 180.27895 * 15 13 12 42 42 H 1.07997 * 121.09183 * 179.97438 * 16 15 13 43 43 H 1.08998 * 111.00094 * 153.57748 * 19 5 3 44 44 H 1.09003 * 110.99746 * 277.38865 * 19 5 3 45 45 H 1.09004 * 110.36306 * 81.82743 * 20 19 5 46 46 H 1.08995 * 110.36638 * 204.04286 * 20 19 5 47 47 H 0.97000 * 119.99651 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6270 1.9839 0.8511 5 6 1.6344 2.1426 -1.3142 6 1 1.4537 1.4127 -2.1033 7 7 0.4535 2.9851 -1.1097 8 6 -0.2991 3.3577 -2.1637 9 8 0.0013 2.9959 -3.2816 10 6 -1.5143 4.2239 -1.9532 11 7 -2.1554 4.4876 -3.2438 12 7 -1.7939 5.5148 -3.9239 13 6 -2.3251 5.8130 -5.0768 14 6 -1.8585 7.0374 -5.8214 15 6 -3.3250 4.9977 -5.6325 16 6 -3.7252 3.8951 -4.9325 17 6 -3.1056 3.6437 -3.6894 18 8 -3.4280 2.6717 -3.0250 19 6 2.8777 3.0106 -1.6435 20 6 4.0312 2.1009 -1.1518 21 7 3.5087 1.4536 0.0652 22 6 4.2660 0.9470 1.0876 23 1 3.7972 0.6669 2.0194 24 6 5.6361 0.7937 0.9264 25 7 6.2074 1.1347 -0.2094 26 14 6.6691 0.1021 2.3207 27 1 6.7400 -1.3761 2.1982 28 1 8.0390 0.6709 2.2511 29 1 6.0493 0.4619 3.6214 30 1 -0.3634 0.4263 -0.9351 31 1 -0.3634 -1.0229 0.0984 32 1 -0.3634 0.5966 0.8367 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 0.2133 3.2746 -0.2156 36 1 -1.2134 5.1673 -1.4978 37 1 -2.2168 3.7110 -1.2963 38 1 -2.4659 7.8939 -5.5289 39 1 -1.9583 6.8705 -6.8940 40 1 -0.8139 7.2333 -5.5799 41 1 -3.7660 5.2365 -6.5891 42 1 -4.4907 3.2377 -5.3174 43 1 2.9538 3.1932 -2.7153 44 1 2.8564 3.9493 -1.0898 45 1 4.2716 1.3520 -1.9064 46 1 4.9120 2.6986 -0.9173 47 1 7.1648 1.0272 -0.3221 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087805292.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:37 Heat of formation + Delta-G solvation = -5.304852 kcal Electronic energy + Delta-G solvation = -29386.564828 eV Core-core repulsion = 25377.599720 eV Total energy + Delta-G solvation = -4008.965108 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.12678 -41.06453 -39.34768 -38.94257 -36.25417 -35.69852 -34.37334 -33.56064 -32.94707 -31.52134 -30.57079 -28.52812 -27.69112 -26.34851 -25.11944 -24.32672 -23.68690 -22.36948 -21.70728 -21.24806 -19.32277 -18.87021 -18.66690 -18.48659 -17.56356 -17.23201 -16.82258 -16.63038 -16.27735 -15.80421 -15.58677 -15.43578 -15.13333 -14.69711 -14.68031 -14.62196 -14.36765 -13.96151 -13.79892 -13.58886 -13.45502 -13.27613 -13.15721 -13.12048 -12.89005 -12.74816 -12.62848 -12.25411 -12.20942 -12.09277 -12.01168 -11.94654 -11.58897 -11.55125 -11.40999 -10.97477 -10.78159 -10.69977 -10.10886 -9.48951 -8.87170 -7.85063 -5.23634 -0.42830 0.62837 1.06609 1.43849 1.46915 1.48564 1.56915 1.99263 2.44589 2.52177 3.11307 3.33401 3.45692 3.63219 3.67217 3.79148 3.84914 3.87619 4.00075 4.08432 4.12652 4.14312 4.31603 4.36780 4.54087 4.57381 4.61320 4.70314 4.71022 4.77984 4.80890 4.93025 4.97539 5.05414 5.08762 5.14686 5.18217 5.23981 5.40951 5.43785 5.48348 5.53746 5.60097 5.70525 6.21745 6.39846 6.53477 7.07652 7.09127 7.18775 7.75209 8.41524 9.25271 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023115 B = 0.002623 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.035580 B =10670.237644 C =11489.862054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.126 4.126 3 C 0.160 3.840 4 H 0.059 0.941 5 C 0.158 3.842 6 H 0.068 0.932 7 N -0.693 5.693 8 C 0.505 3.495 9 O -0.578 6.578 10 C 0.096 3.904 11 N -0.335 5.335 12 N -0.248 5.248 13 C 0.061 3.939 14 C -0.085 4.085 15 C -0.040 4.040 16 C -0.209 4.209 17 C 0.462 3.538 18 O -0.582 6.582 19 C -0.138 4.138 20 C 0.181 3.819 21 N -0.612 5.612 22 C -0.231 4.231 23 H 0.085 0.915 24 C -0.065 4.065 25 N -0.951 5.951 26 Si 0.976 3.024 27 H -0.290 1.290 28 H -0.296 1.296 29 H -0.265 1.265 30 H 0.041 0.959 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.032 0.968 34 H 0.053 0.947 35 H 0.418 0.582 36 H 0.165 0.835 37 H 0.146 0.854 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.070 0.930 41 H 0.202 0.798 42 H 0.178 0.822 43 H 0.061 0.939 44 H 0.078 0.922 45 H -0.012 1.012 46 H 0.049 0.951 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.243 14.382 -8.706 27.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.166 4.166 3 C 0.053 3.947 4 H 0.077 0.923 5 C 0.053 3.947 6 H 0.086 0.914 7 N -0.346 5.346 8 C 0.291 3.709 9 O -0.457 6.457 10 C -0.028 4.028 11 N -0.152 5.152 12 N -0.071 5.071 13 C -0.110 4.110 14 C -0.144 4.144 15 C -0.063 4.063 16 C -0.238 4.238 17 C 0.263 3.737 18 O -0.465 6.465 19 C -0.178 4.178 20 C 0.055 3.945 21 N -0.337 5.337 22 C -0.360 4.360 23 H 0.103 0.897 24 C -0.258 4.258 25 N -0.600 5.600 26 Si 0.805 3.195 27 H -0.217 1.217 28 H -0.223 1.223 29 H -0.190 1.190 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.256 0.744 36 H 0.183 0.817 37 H 0.164 0.836 38 H 0.120 0.880 39 H 0.128 0.872 40 H 0.089 0.911 41 H 0.219 0.781 42 H 0.196 0.804 43 H 0.080 0.920 44 H 0.096 0.904 45 H 0.006 0.994 46 H 0.068 0.932 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -21.362 13.784 -8.366 26.765 hybrid contribution 0.635 -1.314 0.444 1.525 sum -20.728 12.470 -7.922 25.454 Atomic orbital electron populations 1.21647 0.94003 1.01963 1.01565 1.21908 0.96249 0.97829 1.00576 1.21238 0.84497 0.94404 0.94513 0.92332 1.21626 0.84064 0.91830 0.97227 0.91401 1.45680 1.26875 1.51548 1.10468 1.21083 0.84571 0.80568 0.84659 1.90715 1.72490 1.57026 1.25491 1.21894 0.93736 1.03680 0.83528 1.46062 1.31121 1.19281 1.18755 1.70778 1.21941 1.05359 1.09034 1.22726 0.96380 1.00671 0.91215 1.20722 1.02488 0.91299 0.99852 1.22802 0.92021 0.90421 1.01074 1.22924 1.04663 1.02052 0.94170 1.18687 0.81587 0.83663 0.89745 1.90947 1.66071 1.29311 1.60136 1.23210 0.95464 0.98850 1.00282 1.21176 0.94138 0.92337 0.86861 1.44690 1.00438 1.68412 1.20176 1.19339 0.89549 1.34358 0.92713 0.89729 1.25695 0.98373 1.02210 0.99520 1.70149 1.09751 1.54274 1.25799 0.85108 0.77733 0.77608 0.79065 1.21710 1.22280 1.18961 0.94009 0.92393 0.91015 0.94943 0.92801 0.74354 0.81746 0.83598 0.87980 0.87222 0.91124 0.78130 0.80430 0.92050 0.90361 0.99392 0.93243 0.94408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.95 9.57 71.98 0.69 -3.26 16 2 C -0.13 -4.75 5.41 30.59 0.17 -4.58 16 3 C 0.16 6.28 2.94 45.34 0.13 6.42 16 4 H 0.06 2.08 7.69 -2.39 -0.02 2.06 16 5 C 0.16 5.77 1.92 46.18 0.09 5.86 16 6 H 0.07 2.84 7.34 -2.39 -0.02 2.83 16 7 N -0.69 -18.95 4.93 -436.91 -2.16 -21.11 16 8 C 0.51 14.94 7.89 87.66 0.69 15.63 16 9 O -0.58 -22.86 16.16 -3.03 -0.05 -22.91 16 10 C 0.10 2.04 6.04 85.63 0.52 2.56 16 11 N -0.33 -8.33 2.71 -476.15 -1.29 -9.62 16 12 N -0.25 -5.36 10.81 -47.21 -0.51 -5.87 16 13 C 0.06 0.89 6.88 43.32 0.30 1.19 16 14 C -0.09 -0.55 10.18 71.24 0.73 0.17 16 15 C -0.04 -0.46 9.84 22.43 0.22 -0.23 16 16 C -0.21 -3.89 10.13 22.60 0.23 -3.66 16 17 C 0.46 12.78 7.47 84.98 0.63 13.42 16 18 O -0.58 -20.21 16.65 -5.54 -0.09 -20.30 16 19 C -0.14 -5.53 6.77 31.99 0.22 -5.32 16 20 C 0.18 9.16 5.46 86.86 0.47 9.64 16 21 N -0.61 -30.76 3.13 -668.27 -2.09 -32.85 16 22 C -0.23 -12.56 9.77 84.03 0.82 -11.74 16 23 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 24 C -0.06 -3.66 5.47 84.86 0.46 -3.20 16 25 N -0.95 -57.38 10.47 21.65 0.23 -57.16 16 26 Si 0.98 45.49 29.55 68.60 2.03 47.52 16 27 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 28 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 29 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 30 H 0.04 1.30 7.38 -2.39 -0.02 1.28 16 31 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.03 1.36 8.08 -2.38 -0.02 1.34 16 34 H 0.05 2.14 7.91 -2.39 -0.02 2.12 16 35 H 0.42 8.34 8.31 -92.70 -0.77 7.56 16 36 H 0.17 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.15 2.72 7.37 -2.39 -0.02 2.71 16 38 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.11 0.14 8.09 -2.38 -0.02 0.12 16 40 H 0.07 0.66 8.14 -2.39 -0.02 0.65 16 41 H 0.20 0.20 8.06 -2.91 -0.02 0.18 16 42 H 0.18 2.55 8.06 -2.91 -0.02 2.53 16 43 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 44 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 45 H -0.01 -0.68 8.11 -2.38 -0.02 -0.70 16 46 H 0.05 2.79 6.73 -2.39 -0.02 2.77 16 47 H 0.25 14.54 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -84.24 387.72 2.65 -81.59 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.21 Total: 17.83 kcal Atomic # 6 Polarization: 16.52 SS G_CDS: 6.37 Total: 22.89 kcal Atomic # 7 Polarization: -120.79 SS G_CDS: -5.82 Total: -126.61 kcal Atomic # 8 Polarization: -43.07 SS G_CDS: -0.14 Total: -43.21 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -84.24 2.65 -81.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087805292.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.287 kcal (2) G-P(sol) polarization free energy of solvation -84.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds