Wall clock time and date at job start Tue Mar 31 2020 19:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46972 * 2 1 4 4 H 1.08997 * 109.47167 * 54.73879 * 3 2 1 5 5 O 1.42896 * 109.47115 * 294.73560 * 3 2 1 6 6 C 1.42898 * 113.99762 * 150.14675 * 5 3 2 7 7 C 1.50706 * 109.47048 * 174.73627 * 3 2 1 8 8 O 1.21278 * 120.00010 * 119.99492 * 7 3 2 9 9 N 1.34780 * 119.99723 * 300.00120 * 7 3 2 10 10 C 1.46496 * 119.99524 * 179.97438 * 9 7 3 11 11 H 1.09001 * 110.42072 * 323.96627 * 10 9 7 12 12 C 1.54764 * 110.57052 * 201.40374 * 10 9 7 13 13 C 1.53389 * 101.45126 * 217.02582 * 12 10 9 14 14 C 1.52452 * 115.83645 * 253.18236 * 13 12 10 15 15 N 1.47252 * 87.71784 * 218.48290 * 14 13 12 16 16 C 1.36942 * 135.94268 * 206.21182 * 15 14 13 17 17 H 1.07997 * 119.99644 * 359.97438 * 16 15 14 18 18 C 1.38813 * 119.99966 * 179.97438 * 16 15 14 19 19 N 1.31619 * 119.99998 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99855 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47061 * 179.97438 * 20 18 16 22 22 H 1.48506 * 109.47037 * 300.00273 * 20 18 16 23 23 H 1.48498 * 109.47125 * 59.99927 * 20 18 16 24 24 C 1.47264 * 88.11789 * 26.46824 * 15 14 13 25 25 N 1.46034 * 106.81122 * 24.81879 * 13 12 10 26 26 C 1.37273 * 142.31795 * 163.61908 * 25 13 12 27 27 C 1.34525 * 106.92770 * 180.12052 * 26 25 13 28 28 N 1.33972 * 108.04786 * 359.97059 * 27 26 25 29 29 C 1.30854 * 109.36116 * 359.97438 * 28 27 26 30 30 H 1.09003 * 109.47394 * 185.21351 * 1 2 3 31 31 H 1.09008 * 109.47411 * 305.21227 * 1 2 3 32 32 H 1.09002 * 109.47379 * 65.21431 * 1 2 3 33 33 H 1.08995 * 109.47313 * 239.99226 * 2 1 3 34 34 H 1.09010 * 109.46607 * 119.99973 * 2 1 3 35 35 H 1.08999 * 109.47446 * 59.51505 * 6 5 3 36 36 H 1.09005 * 109.47074 * 179.51934 * 6 5 3 37 37 H 1.08997 * 109.47192 * 299.51061 * 6 5 3 38 38 H 0.96994 * 120.00191 * 359.97438 * 9 7 3 39 39 H 1.09000 * 111.02973 * 98.98229 * 12 10 9 40 40 H 1.09004 * 111.03080 * 335.06627 * 12 10 9 41 41 H 1.09003 * 113.51691 * 103.76997 * 14 13 12 42 42 H 1.08998 * 113.57281 * 333.20365 * 14 13 12 43 43 H 0.97001 * 119.99802 * 180.02562 * 19 18 16 44 44 H 1.08998 * 113.51414 * 88.24627 * 24 15 14 45 45 H 1.09004 * 113.50896 * 218.82003 * 24 15 14 46 46 H 1.07998 * 126.53800 * 0.08738 * 26 25 13 47 47 H 1.08004 * 125.97441 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6017 1.9828 0.8391 5 8 1.6672 2.0794 -1.2236 6 6 1.4639 3.4890 -1.1066 7 6 3.5414 1.4445 0.1304 8 8 4.2249 1.9423 -0.7390 9 7 4.1245 0.8929 1.2131 10 6 5.5840 0.8944 1.3395 11 1 6.0503 0.7562 0.3640 12 6 6.0459 -0.2091 2.3213 13 6 7.2194 0.4824 3.0266 14 6 8.6098 -0.0097 2.6406 15 7 8.9919 0.1427 4.0545 16 6 10.1553 0.3683 4.7408 17 1 11.0862 0.4769 4.2042 18 6 10.1379 0.4573 6.1259 19 7 9.0033 0.3254 6.7797 20 14 11.7251 0.7644 7.0620 21 1 11.4386 0.8172 8.5181 22 1 12.6838 -0.3355 6.7851 23 1 12.3145 2.0560 6.6268 24 6 7.5768 -0.0602 4.4084 25 7 6.9853 1.9203 2.9248 26 6 7.3738 3.1246 3.4568 27 6 6.6736 4.0792 2.8180 28 7 5.8793 3.4807 1.9203 29 6 6.0599 2.1859 1.9763 30 1 -0.3634 -1.0234 0.0934 31 1 -0.3634 0.5926 0.8397 32 1 -0.3634 0.4308 -0.9330 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 2.3822 3.9609 -0.7571 36 1 1.1922 3.8989 -2.0794 37 1 0.6620 3.6825 -0.3941 38 1 3.5778 0.4950 1.9085 39 1 6.3806 -1.0962 1.7835 40 1 5.2558 -0.4582 3.0297 41 1 9.1406 0.6675 1.9714 42 1 8.6259 -1.0432 2.2948 43 1 8.9911 0.3880 7.7476 44 1 7.3090 -1.1076 4.5469 45 1 7.2381 0.5746 5.2273 46 1 8.1024 3.2767 4.2394 47 1 6.7401 5.1422 2.9974 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101613569.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:56 Heat of formation + Delta-G solvation = 59.155484 kcal Electronic energy + Delta-G solvation = -29691.753691 eV Core-core repulsion = 25685.583793 eV Total energy + Delta-G solvation = -4006.169898 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.21484 -40.05631 -38.61787 -37.61861 -35.54347 -34.06926 -33.14471 -31.81463 -30.58088 -28.36655 -28.17265 -27.22728 -26.14963 -25.15051 -24.28905 -22.41022 -21.94706 -21.33681 -20.67730 -19.81476 -18.73537 -17.74137 -17.15961 -16.94313 -16.26833 -15.65293 -15.47216 -15.01739 -14.80985 -14.62435 -14.43024 -14.24586 -13.99337 -13.94264 -13.61368 -13.58919 -13.34147 -13.06779 -12.66143 -12.51655 -12.27633 -12.16620 -11.98955 -11.73807 -11.54911 -11.46733 -11.40669 -11.05221 -10.96824 -10.88879 -10.65113 -10.22662 -10.17065 -9.72001 -9.51188 -9.33543 -9.21786 -9.04547 -8.89937 -7.89860 -7.16098 -5.97495 -3.31910 2.44783 2.59625 2.91820 3.25173 3.29074 3.33591 3.34259 3.56359 3.67190 4.08145 4.27480 4.45929 4.47281 4.60206 4.69074 4.74570 4.82192 4.95335 5.08129 5.11096 5.23440 5.31267 5.36029 5.40163 5.47428 5.48675 5.60990 5.62895 5.69957 5.74754 5.76498 5.86211 5.95713 5.99880 6.13044 6.18458 6.24333 6.35268 6.70806 6.81651 6.87675 6.95538 7.23428 7.31250 7.41186 7.62318 7.74259 8.21057 8.59881 8.81851 9.48760 10.34319 11.19603 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023343 B = 0.002805 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.212263 B = 9980.130050 C =10535.247417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.076 3.924 4 H 0.087 0.913 5 O -0.357 6.357 6 C 0.029 3.971 7 C 0.495 3.505 8 O -0.511 6.511 9 N -0.716 5.716 10 C 0.235 3.765 11 H 0.113 0.887 12 C -0.114 4.114 13 C 0.096 3.904 14 C 0.119 3.881 15 N -0.603 5.603 16 C -0.224 4.224 17 H 0.083 0.917 18 C -0.002 4.002 19 N -0.919 5.919 20 Si 0.916 3.084 21 H -0.288 1.288 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.161 3.839 25 N -0.427 5.427 26 C 0.008 3.992 27 C -0.050 4.050 28 N -0.470 5.470 29 C 0.153 3.847 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.051 0.949 36 H 0.088 0.912 37 H 0.040 0.960 38 H 0.401 0.599 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.049 0.951 42 H 0.056 0.944 43 H 0.257 0.743 44 H 0.047 0.953 45 H 0.081 0.919 46 H 0.172 0.828 47 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.435 -1.379 -10.003 19.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C 0.014 3.986 4 H 0.105 0.895 5 O -0.274 6.274 6 C -0.068 4.068 7 C 0.280 3.720 8 O -0.384 6.384 9 N -0.371 5.371 10 C 0.127 3.873 11 H 0.131 0.869 12 C -0.154 4.154 13 C 0.009 3.991 14 C -0.008 4.008 15 N -0.328 5.328 16 C -0.351 4.351 17 H 0.101 0.899 18 C -0.199 4.199 19 N -0.565 5.565 20 Si 0.745 3.255 21 H -0.214 1.214 22 H -0.210 1.210 23 H -0.209 1.209 24 C 0.035 3.965 25 N -0.108 5.108 26 C -0.126 4.126 27 C -0.198 4.198 28 N -0.189 5.189 29 C -0.111 4.111 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.059 0.941 38 H 0.236 0.764 39 H 0.126 0.874 40 H 0.113 0.887 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.099 0.901 46 H 0.189 0.811 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -16.120 -0.732 -10.899 19.473 hybrid contribution 1.454 -0.099 1.934 2.422 sum -14.667 -0.831 -8.965 17.210 Atomic orbital electron populations 1.21727 0.94457 1.01957 1.02512 1.21609 0.97315 0.92929 1.03625 1.22116 0.90732 0.96340 0.89446 0.89509 1.87950 1.88199 1.21086 1.30200 1.22869 1.00154 0.81188 1.02542 1.21353 0.91152 0.77802 0.81722 1.90739 1.64796 1.42830 1.40027 1.45974 1.06521 1.61268 1.23325 1.19879 0.80687 0.87390 0.99314 0.86925 1.22748 0.97633 0.97482 0.97528 1.22495 0.95949 0.77535 1.03111 1.22657 0.89687 0.98285 0.90221 1.45606 1.04247 1.82970 1.00023 1.18866 0.84596 1.42894 0.88744 0.89937 1.24795 0.97469 1.01687 0.95989 1.69781 1.24232 1.55165 1.07354 0.86149 0.82145 0.78281 0.78898 1.21404 1.20990 1.20891 1.22301 0.84796 0.98093 0.91359 1.45621 1.31103 1.05729 1.28396 1.22514 1.04526 0.82284 1.03302 1.22175 0.99774 0.99104 0.98739 1.69735 1.24176 1.02858 1.22102 1.24448 0.97011 0.93714 0.95900 0.92210 0.92703 0.91828 0.90261 0.90048 0.93069 0.89382 0.94115 0.76440 0.87413 0.88727 0.93300 0.92690 0.93322 0.93505 0.90101 0.81081 0.81438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.76 37.16 0.36 -0.58 16 2 C -0.12 -0.87 5.59 -26.73 -0.15 -1.01 16 3 C 0.08 0.77 2.52 -27.88 -0.07 0.69 16 4 H 0.09 0.74 7.79 -51.93 -0.40 0.34 16 5 O -0.36 -4.27 9.53 -55.14 -0.53 -4.80 16 6 C 0.03 0.29 10.77 101.05 1.09 1.38 16 7 C 0.49 6.61 7.18 -10.98 -0.08 6.53 16 8 O -0.51 -9.21 16.18 -14.35 -0.23 -9.45 16 9 N -0.72 -8.25 5.02 -53.56 -0.27 -8.52 16 10 C 0.23 3.27 3.23 -67.68 -0.22 3.06 16 11 H 0.11 1.67 7.66 -51.93 -0.40 1.27 16 12 C -0.11 -1.39 6.24 -25.60 -0.16 -1.54 16 13 C 0.10 1.65 1.64 -133.42 -0.22 1.43 16 14 C 0.12 2.24 8.18 -7.91 -0.06 2.17 16 15 N -0.60 -14.27 3.79 -184.74 -0.70 -14.97 16 16 C -0.22 -5.94 10.74 -15.06 -0.16 -6.10 16 17 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 18 C 0.00 -0.06 5.50 -17.43 -0.10 -0.15 16 19 N -0.92 -25.65 11.51 55.49 0.64 -25.01 16 20 Si 0.92 21.24 29.55 -169.99 -5.02 16.22 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 C 0.16 3.38 6.94 -7.78 -0.05 3.33 16 25 N -0.43 -8.03 3.42 -100.95 -0.35 -8.38 16 26 C 0.01 0.16 12.03 -16.43 -0.20 -0.04 16 27 C -0.05 -0.92 11.86 -17.93 -0.21 -1.13 16 28 N -0.47 -9.26 11.25 -10.48 -0.12 -9.38 16 29 C 0.15 2.76 8.22 -154.55 -1.27 1.49 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.31 8.14 -51.92 -0.42 -0.11 16 32 H 0.06 0.46 7.97 -51.93 -0.41 0.04 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.44 7.42 -51.92 -0.39 0.05 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.04 0.32 8.09 -51.93 -0.42 -0.10 16 38 H 0.40 3.32 7.75 -40.82 -0.32 3.00 16 39 H 0.11 1.04 7.87 -51.93 -0.41 0.63 16 40 H 0.09 0.97 7.81 -51.93 -0.41 0.56 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.06 0.92 7.98 -51.93 -0.41 0.50 16 43 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.08 1.97 7.15 -51.93 -0.37 1.60 16 46 H 0.17 3.45 8.06 -52.49 -0.42 3.02 16 47 H 0.17 2.57 8.06 -52.48 -0.42 2.15 16 LS Contribution 388.70 15.07 5.86 5.86 Total: -1.00 -34.89 388.70 -9.51 -44.39 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -7.29 Total: 4.51 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: -1.50 Total: 9.52 kcal Atomic # 7 Polarization: -65.46 SS G_CDS: -0.79 Total: -66.26 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.76 Total: -14.24 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.89 -9.51 -44.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101613569.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.550 kcal (2) G-P(sol) polarization free energy of solvation -34.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds