Wall clock time and date at job start Tue Mar 31 2020 19:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46972 * 2 1 4 4 H 1.08997 * 109.47167 * 54.73879 * 3 2 1 5 5 O 1.42896 * 109.47115 * 294.73560 * 3 2 1 6 6 C 1.42898 * 113.99762 * 150.14675 * 5 3 2 7 7 C 1.50706 * 109.47048 * 174.73627 * 3 2 1 8 8 O 1.21278 * 120.00010 * 119.99492 * 7 3 2 9 9 N 1.34780 * 119.99723 * 300.00120 * 7 3 2 10 10 C 1.46496 * 119.99524 * 179.97438 * 9 7 3 11 11 H 1.09001 * 110.42072 * 323.96627 * 10 9 7 12 12 C 1.54764 * 110.57052 * 201.40374 * 10 9 7 13 13 C 1.53389 * 101.45126 * 217.02582 * 12 10 9 14 14 C 1.52452 * 115.83645 * 253.18236 * 13 12 10 15 15 N 1.47252 * 87.71784 * 218.48290 * 14 13 12 16 16 C 1.36942 * 135.94268 * 206.21182 * 15 14 13 17 17 H 1.07997 * 119.99644 * 359.97438 * 16 15 14 18 18 C 1.38813 * 119.99966 * 179.97438 * 16 15 14 19 19 N 1.31619 * 119.99998 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99855 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47061 * 179.97438 * 20 18 16 22 22 H 1.48506 * 109.47037 * 300.00273 * 20 18 16 23 23 H 1.48498 * 109.47125 * 59.99927 * 20 18 16 24 24 C 1.47264 * 88.11789 * 26.46824 * 15 14 13 25 25 N 1.46034 * 106.81122 * 24.81879 * 13 12 10 26 26 C 1.37273 * 142.31795 * 163.61908 * 25 13 12 27 27 C 1.34525 * 106.92770 * 180.12052 * 26 25 13 28 28 N 1.33972 * 108.04786 * 359.97059 * 27 26 25 29 29 C 1.30854 * 109.36116 * 359.97438 * 28 27 26 30 30 H 1.09003 * 109.47394 * 185.21351 * 1 2 3 31 31 H 1.09008 * 109.47411 * 305.21227 * 1 2 3 32 32 H 1.09002 * 109.47379 * 65.21431 * 1 2 3 33 33 H 1.08995 * 109.47313 * 239.99226 * 2 1 3 34 34 H 1.09010 * 109.46607 * 119.99973 * 2 1 3 35 35 H 1.08999 * 109.47446 * 59.51505 * 6 5 3 36 36 H 1.09005 * 109.47074 * 179.51934 * 6 5 3 37 37 H 1.08997 * 109.47192 * 299.51061 * 6 5 3 38 38 H 0.96994 * 120.00191 * 359.97438 * 9 7 3 39 39 H 1.09000 * 111.02973 * 98.98229 * 12 10 9 40 40 H 1.09004 * 111.03080 * 335.06627 * 12 10 9 41 41 H 1.09003 * 113.51691 * 103.76997 * 14 13 12 42 42 H 1.08998 * 113.57281 * 333.20365 * 14 13 12 43 43 H 0.97001 * 119.99802 * 180.02562 * 19 18 16 44 44 H 1.08998 * 113.51414 * 88.24627 * 24 15 14 45 45 H 1.09004 * 113.50896 * 218.82003 * 24 15 14 46 46 H 1.07998 * 126.53800 * 0.08738 * 26 25 13 47 47 H 1.08004 * 125.97441 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6017 1.9828 0.8391 5 8 1.6672 2.0794 -1.2236 6 6 1.4639 3.4890 -1.1066 7 6 3.5414 1.4445 0.1304 8 8 4.2249 1.9423 -0.7390 9 7 4.1245 0.8929 1.2131 10 6 5.5840 0.8944 1.3395 11 1 6.0503 0.7562 0.3640 12 6 6.0459 -0.2091 2.3213 13 6 7.2194 0.4824 3.0266 14 6 8.6098 -0.0097 2.6406 15 7 8.9919 0.1427 4.0545 16 6 10.1553 0.3683 4.7408 17 1 11.0862 0.4769 4.2042 18 6 10.1379 0.4573 6.1259 19 7 9.0033 0.3254 6.7797 20 14 11.7251 0.7644 7.0620 21 1 11.4386 0.8172 8.5181 22 1 12.6838 -0.3355 6.7851 23 1 12.3145 2.0560 6.6268 24 6 7.5768 -0.0602 4.4084 25 7 6.9853 1.9203 2.9248 26 6 7.3738 3.1246 3.4568 27 6 6.6736 4.0792 2.8180 28 7 5.8793 3.4807 1.9203 29 6 6.0599 2.1859 1.9763 30 1 -0.3634 -1.0234 0.0934 31 1 -0.3634 0.5926 0.8397 32 1 -0.3634 0.4308 -0.9330 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 2.3822 3.9609 -0.7571 36 1 1.1922 3.8989 -2.0794 37 1 0.6620 3.6825 -0.3941 38 1 3.5778 0.4950 1.9085 39 1 6.3806 -1.0962 1.7835 40 1 5.2558 -0.4582 3.0297 41 1 9.1406 0.6675 1.9714 42 1 8.6259 -1.0432 2.2948 43 1 8.9911 0.3880 7.7476 44 1 7.3090 -1.1076 4.5469 45 1 7.2381 0.5746 5.2273 46 1 8.1024 3.2767 4.2394 47 1 6.7401 5.1422 2.9974 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101613569.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:54 Heat of formation + Delta-G solvation = 35.630998 kcal Electronic energy + Delta-G solvation = -29692.773789 eV Core-core repulsion = 25685.583793 eV Total energy + Delta-G solvation = -4007.189996 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.62988 -41.05317 -40.14659 -38.54438 -36.79781 -35.09583 -34.38779 -33.49310 -31.84124 -29.92952 -29.21175 -28.48805 -27.08715 -26.74514 -25.67908 -23.38872 -23.08269 -22.90500 -21.65713 -21.15589 -20.20819 -18.89496 -18.61610 -18.02709 -17.37710 -17.17928 -16.72833 -16.29435 -16.12503 -15.75237 -15.68224 -15.45544 -15.41932 -14.97210 -14.93336 -14.80473 -14.50771 -14.31192 -13.99619 -13.52402 -13.36386 -13.30891 -13.20834 -12.93494 -12.90446 -12.80903 -12.55689 -12.43005 -11.99330 -11.96018 -11.79009 -11.66169 -11.57322 -11.50590 -11.07257 -10.90576 -10.40789 -10.37366 -10.24817 -9.36381 -9.04399 -7.99438 -5.32695 1.02945 1.42556 1.43918 1.50240 1.56053 1.74947 1.96349 2.26212 2.39915 2.79887 2.88792 3.18785 3.26264 3.29482 3.51032 3.61493 3.85042 3.94540 4.01220 4.07788 4.20239 4.26319 4.42038 4.48079 4.55989 4.57978 4.61173 4.63733 4.67919 4.70939 4.81282 4.84559 4.85951 4.93837 5.06920 5.15311 5.16812 5.24830 5.33345 5.36623 5.48945 5.49991 5.80512 5.87767 6.02954 6.18252 6.53148 6.81557 7.14131 7.25347 7.50405 8.44832 9.16911 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023343 B = 0.002805 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.212263 B = 9980.130050 C =10535.247417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C 0.076 3.924 4 H 0.107 0.893 5 O -0.377 6.377 6 C 0.027 3.973 7 C 0.492 3.508 8 O -0.564 6.564 9 N -0.700 5.700 10 C 0.238 3.762 11 H 0.109 0.891 12 C -0.096 4.096 13 C 0.110 3.890 14 C 0.119 3.881 15 N -0.636 5.636 16 C -0.231 4.231 17 H 0.079 0.921 18 C -0.055 4.055 19 N -0.946 5.946 20 Si 0.974 3.026 21 H -0.293 1.293 22 H -0.276 1.276 23 H -0.281 1.281 24 C 0.163 3.837 25 N -0.438 5.438 26 C -0.022 4.022 27 C -0.043 4.043 28 N -0.501 5.501 29 C 0.157 3.843 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.107 0.893 35 H 0.024 0.976 36 H 0.099 0.901 37 H 0.065 0.935 38 H 0.420 0.580 39 H 0.147 0.853 40 H 0.123 0.877 41 H 0.036 0.964 42 H 0.093 0.907 43 H 0.250 0.750 44 H 0.062 0.938 45 H 0.040 0.960 46 H 0.153 0.847 47 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.142 -3.078 -10.651 21.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C 0.015 3.985 4 H 0.125 0.875 5 O -0.294 6.294 6 C -0.069 4.069 7 C 0.279 3.721 8 O -0.441 6.441 9 N -0.355 5.355 10 C 0.130 3.870 11 H 0.126 0.874 12 C -0.135 4.135 13 C 0.023 3.977 14 C -0.007 4.007 15 N -0.362 5.362 16 C -0.359 4.359 17 H 0.097 0.903 18 C -0.249 4.249 19 N -0.594 5.594 20 Si 0.802 3.198 21 H -0.219 1.219 22 H -0.202 1.202 23 H -0.208 1.208 24 C 0.037 3.963 25 N -0.120 5.120 26 C -0.156 4.156 27 C -0.190 4.190 28 N -0.221 5.221 29 C -0.107 4.107 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.126 0.874 35 H 0.043 0.957 36 H 0.117 0.883 37 H 0.083 0.917 38 H 0.258 0.742 39 H 0.165 0.835 40 H 0.142 0.858 41 H 0.055 0.945 42 H 0.110 0.890 43 H 0.059 0.941 44 H 0.079 0.921 45 H 0.059 0.941 46 H 0.171 0.829 47 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -17.853 -2.455 -11.549 21.404 hybrid contribution 1.980 0.480 2.069 2.904 sum -15.873 -1.975 -9.479 18.593 Atomic orbital electron populations 1.21711 0.93501 1.02910 1.02268 1.21671 0.98051 0.90901 1.04406 1.22347 0.88353 0.98261 0.89547 0.87535 1.87933 1.88072 1.21826 1.31575 1.22946 0.99608 0.80429 1.03894 1.22050 0.92445 0.76506 0.81080 1.90719 1.66168 1.45173 1.41994 1.45811 1.05653 1.60594 1.23453 1.19926 0.82070 0.85826 0.99189 0.87374 1.22889 0.95990 0.97330 0.97245 1.22446 0.97451 0.77076 1.00695 1.22893 0.90221 0.99919 0.87621 1.45855 1.04453 1.83430 1.02450 1.19133 0.85760 1.41748 0.89265 0.90279 1.25495 1.00083 1.02482 0.96853 1.69942 1.25752 1.56837 1.06864 0.85223 0.79129 0.78170 0.77230 1.21893 1.20228 1.20750 1.22242 0.83680 0.98172 0.92183 1.45818 1.31341 1.06138 1.28655 1.22432 1.05506 0.83509 1.04147 1.22556 0.98668 1.00076 0.97704 1.69775 1.25271 1.04040 1.22986 1.25318 0.95927 0.94391 0.95043 0.90873 0.91758 0.93087 0.91297 0.87427 0.95729 0.88267 0.91665 0.74165 0.83482 0.85848 0.94545 0.88988 0.94106 0.92053 0.94147 0.82909 0.79219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.76 71.98 0.70 -0.69 16 2 C -0.11 -1.31 5.59 30.59 0.17 -1.14 16 3 C 0.08 1.37 2.52 29.85 0.08 1.45 16 4 H 0.11 1.50 7.79 -2.39 -0.02 1.48 16 5 O -0.38 -8.54 9.53 -129.94 -1.24 -9.78 16 6 C 0.03 0.53 10.77 113.37 1.22 1.75 16 7 C 0.49 12.28 7.18 87.66 0.63 12.90 16 8 O -0.56 -20.10 16.18 16.01 0.26 -19.84 16 9 N -0.70 -14.03 5.02 -441.76 -2.22 -16.25 16 10 C 0.24 6.02 3.23 45.15 0.15 6.17 16 11 H 0.11 2.95 7.66 -2.39 -0.02 2.93 16 12 C -0.10 -1.93 6.24 31.33 0.20 -1.73 16 13 C 0.11 3.59 1.64 3.93 0.01 3.60 16 14 C 0.12 4.30 8.18 83.46 0.68 4.99 16 15 N -0.64 -30.06 3.79 -738.40 -2.80 -32.86 16 16 C -0.23 -12.40 10.74 84.03 0.90 -11.50 16 17 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 18 C -0.06 -3.00 5.50 84.86 0.47 -2.54 16 19 N -0.95 -54.02 11.51 21.65 0.25 -53.77 16 20 Si 0.97 44.37 29.55 68.60 2.03 46.40 16 21 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 22 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 24 C 0.16 6.77 6.94 83.54 0.58 7.35 16 25 N -0.44 -16.35 3.42 -473.31 -1.62 -17.97 16 26 C -0.02 -0.89 12.03 82.99 1.00 0.11 16 27 C -0.04 -1.58 11.86 83.52 0.99 -0.59 16 28 N -0.50 -19.66 11.25 -187.08 -2.10 -21.76 16 29 C 0.16 5.52 8.22 138.30 1.14 6.65 16 30 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.05 0.62 7.97 -2.39 -0.02 0.60 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.11 0.67 7.42 -2.38 -0.02 0.65 16 35 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 37 H 0.06 0.90 8.09 -2.39 -0.02 0.88 16 38 H 0.42 5.17 7.75 -92.71 -0.72 4.45 16 39 H 0.15 1.94 7.87 -2.39 -0.02 1.92 16 40 H 0.12 1.87 7.81 -2.39 -0.02 1.85 16 41 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.09 2.71 7.98 -2.39 -0.02 2.69 16 43 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 44 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.04 2.01 7.15 -2.38 -0.02 1.99 16 46 H 0.15 6.59 8.06 -2.91 -0.02 6.57 16 47 H 0.19 5.85 8.06 -2.91 -0.02 5.82 16 Total: -1.00 -79.77 388.70 1.73 -78.04 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.26 Total: 21.01 kcal Atomic # 6 Polarization: 17.87 SS G_CDS: 8.90 Total: 26.78 kcal Atomic # 7 Polarization: -134.12 SS G_CDS: -8.49 Total: -142.61 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -0.98 Total: -29.62 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -79.77 1.73 -78.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101613569.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.675 kcal (2) G-P(sol) polarization free energy of solvation -79.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds