Wall clock time and date at job start Tue Mar 31 2020 19:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47153 * 2 1 4 4 H 1.08998 * 109.47031 * 305.30082 * 3 2 1 5 5 O 1.42904 * 109.47105 * 65.29944 * 3 2 1 6 6 C 1.42892 * 114.00035 * 208.95464 * 5 3 2 7 7 C 1.50698 * 109.46908 * 185.29564 * 3 2 1 8 8 O 1.21281 * 120.00354 * 244.99770 * 7 3 2 9 9 N 1.34780 * 119.99843 * 65.00554 * 7 3 2 10 10 C 1.46495 * 119.99960 * 179.97438 * 9 7 3 11 11 H 1.09005 * 110.51760 * 32.44437 * 10 9 7 12 12 C 1.54764 * 110.46755 * 154.99799 * 10 9 7 13 13 C 1.53382 * 101.45383 * 142.89831 * 12 10 9 14 14 C 1.52454 * 115.84788 * 106.82660 * 13 12 10 15 15 N 1.47265 * 87.71811 * 90.71979 * 14 13 12 16 16 C 1.36930 * 135.94150 * 206.21870 * 15 14 13 17 17 H 1.07992 * 120.00343 * 6.50982 * 16 15 14 18 18 C 1.38813 * 119.99571 * 186.78792 * 16 15 14 19 19 N 1.31622 * 120.00291 * 354.53071 * 18 16 15 20 20 Si 1.86805 * 120.00041 * 174.53768 * 18 16 15 21 21 H 1.48496 * 109.47255 * 94.98060 * 20 18 16 22 22 H 1.48500 * 109.46872 * 214.98483 * 20 18 16 23 23 H 1.48499 * 109.46699 * 334.97665 * 20 18 16 24 24 C 1.47263 * 88.11329 * 26.46799 * 15 14 13 25 25 N 1.46045 * 106.81366 * 335.19357 * 13 12 10 26 26 C 1.37271 * 142.31559 * 196.37693 * 25 13 12 27 27 C 1.34520 * 106.92709 * 179.88408 * 26 25 13 28 28 N 1.33974 * 108.04738 * 0.02562 * 27 26 25 29 29 C 1.30849 * 109.36169 * 0.04365 * 28 27 26 30 30 H 1.09003 * 109.46541 * 304.48987 * 1 2 3 31 31 H 1.09000 * 109.46866 * 64.48931 * 1 2 3 32 32 H 1.08991 * 109.47057 * 184.49460 * 1 2 3 33 33 H 1.09004 * 109.46839 * 239.99917 * 2 1 3 34 34 H 1.09003 * 109.47291 * 120.00121 * 2 1 3 35 35 H 1.09000 * 109.47580 * 184.85990 * 6 5 3 36 36 H 1.09000 * 109.46980 * 304.86174 * 6 5 3 37 37 H 1.09005 * 109.47214 * 64.86192 * 6 5 3 38 38 H 0.97000 * 119.99737 * 359.97438 * 9 7 3 39 39 H 1.08997 * 111.02406 * 24.85571 * 12 10 9 40 40 H 1.09003 * 111.06164 * 260.95686 * 12 10 9 41 41 H 1.09004 * 113.51511 * 336.01097 * 14 13 12 42 42 H 1.08992 * 113.57552 * 205.43772 * 14 13 12 43 43 H 0.96997 * 120.00246 * 179.97438 * 19 18 16 44 44 H 1.09006 * 113.50870 * 88.23840 * 24 15 14 45 45 H 1.08996 * 113.51683 * 218.81092 * 24 15 14 46 46 H 1.08004 * 126.53722 * 359.86579 * 26 25 13 47 47 H 1.08000 * 125.97566 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6013 1.9830 -0.8387 5 8 1.6681 2.0793 1.2240 6 6 1.4844 3.4919 1.1119 7 6 3.5413 1.4445 -0.1311 8 8 4.2290 1.8597 0.7775 9 7 4.1199 0.9849 -1.2584 10 6 5.5793 0.9873 -1.3861 11 1 6.0480 0.8247 -0.4155 12 6 6.0360 -0.0934 -2.3953 13 6 7.2087 0.6123 -3.0875 14 6 8.5994 0.1085 -2.7180 15 7 8.4919 -0.8357 -3.8430 16 6 9.0257 -2.0569 -4.1571 17 1 9.6267 -2.5861 -3.4325 18 6 8.7992 -2.6120 -5.4091 19 7 7.9848 -2.0175 -6.2551 20 14 9.6502 -4.2029 -5.8933 21 1 8.7506 -5.3507 -5.6128 22 1 9.9738 -4.1701 -7.3422 23 1 10.9027 -4.3525 -5.1097 24 6 7.5642 0.1107 -4.4853 25 7 6.9780 2.0479 -2.9507 26 6 7.3676 3.2638 -3.4550 27 6 6.6715 4.2043 -2.7913 28 7 5.8786 3.5862 -1.9058 29 6 6.0564 2.2928 -1.9930 30 1 -0.3632 0.5820 0.8471 31 1 -0.3633 0.4426 -0.9275 32 1 -0.3633 -1.0244 0.0805 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.2885 3.9124 2.0983 36 1 2.3854 3.9436 0.6968 37 1 0.6392 3.6974 0.4550 38 1 3.5700 0.6526 -1.9850 39 1 5.2432 -0.3240 -3.1069 40 1 6.3704 -0.9940 -1.8803 41 1 8.6408 -0.3787 -1.7439 42 1 9.3827 0.8548 -2.8501 43 1 7.8268 -2.4052 -7.1301 44 1 8.0635 0.8584 -5.1016 45 1 6.7343 -0.3746 -4.9988 46 1 8.0946 3.4330 -4.2356 47 1 6.7404 5.2711 -2.9449 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101613570.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:59 Heat of formation + Delta-G solvation = 56.932646 kcal Electronic energy + Delta-G solvation = -29610.659194 eV Core-core repulsion = 25604.392907 eV Total energy + Delta-G solvation = -4006.266287 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.33186 -40.05985 -38.76424 -37.61223 -35.49577 -34.02001 -33.24199 -31.88733 -30.70686 -28.24537 -28.16706 -27.36521 -26.17389 -25.19272 -24.31248 -22.45896 -22.18543 -21.29101 -20.67572 -19.79002 -18.76028 -17.78547 -17.16419 -17.01749 -16.22952 -15.91089 -15.51464 -15.05930 -14.86577 -14.66172 -14.47706 -14.22155 -14.07491 -13.97915 -13.66167 -13.58848 -13.33253 -13.01519 -12.67680 -12.34493 -12.23831 -12.22551 -11.94528 -11.78803 -11.66053 -11.38865 -11.13882 -11.11817 -11.00726 -10.94429 -10.64329 -10.50668 -10.29049 -9.79392 -9.59852 -9.35569 -9.22576 -9.06639 -8.98935 -8.08232 -7.21069 -6.04046 -3.38154 2.28505 2.58566 2.85653 3.11663 3.25359 3.32635 3.33733 3.47262 3.63064 4.08318 4.26178 4.46844 4.50622 4.63745 4.69716 4.73921 4.91337 4.99237 5.01150 5.13579 5.25403 5.25853 5.31436 5.36165 5.42076 5.50057 5.60258 5.60668 5.67941 5.79381 5.80987 5.90540 5.95132 6.01077 6.02184 6.13780 6.21524 6.35250 6.70545 6.73939 6.81531 6.82255 7.14326 7.18065 7.39929 7.45657 7.68611 8.20537 8.44550 8.76480 9.43282 10.28712 11.13806 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013930 B = 0.003161 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.507984 B = 8855.752061 C =10274.240274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C 0.076 3.924 4 H 0.086 0.914 5 O -0.357 6.357 6 C 0.029 3.971 7 C 0.495 3.505 8 O -0.513 6.513 9 N -0.715 5.715 10 C 0.229 3.771 11 H 0.116 0.884 12 C -0.089 4.089 13 C 0.095 3.905 14 C 0.121 3.879 15 N -0.596 5.596 16 C -0.226 4.226 17 H 0.087 0.913 18 C 0.000 4.000 19 N -0.916 5.916 20 Si 0.915 3.085 21 H -0.286 1.286 22 H -0.288 1.288 23 H -0.279 1.279 24 C 0.168 3.832 25 N -0.448 5.448 26 C -0.024 4.024 27 C -0.037 4.037 28 N -0.474 5.474 29 C 0.165 3.835 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.049 0.951 37 H 0.041 0.959 38 H 0.402 0.598 39 H 0.095 0.905 40 H 0.112 0.888 41 H 0.055 0.945 42 H 0.041 0.959 43 H 0.258 0.742 44 H 0.035 0.965 45 H 0.080 0.920 46 H 0.168 0.832 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.013 6.714 8.005 16.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C 0.014 3.986 4 H 0.104 0.896 5 O -0.274 6.274 6 C -0.068 4.068 7 C 0.280 3.720 8 O -0.387 6.387 9 N -0.369 5.369 10 C 0.122 3.878 11 H 0.134 0.866 12 C -0.128 4.128 13 C 0.009 3.991 14 C -0.007 4.007 15 N -0.323 5.323 16 C -0.353 4.353 17 H 0.105 0.895 18 C -0.198 4.198 19 N -0.561 5.561 20 Si 0.745 3.255 21 H -0.213 1.213 22 H -0.214 1.214 23 H -0.204 1.204 24 C 0.041 3.959 25 N -0.130 5.130 26 C -0.157 4.157 27 C -0.186 4.186 28 N -0.193 5.193 29 C -0.099 4.099 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.237 0.763 39 H 0.113 0.887 40 H 0.130 0.870 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.067 0.933 44 H 0.053 0.947 45 H 0.099 0.901 46 H 0.185 0.815 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -12.850 6.892 9.033 17.153 hybrid contribution 1.163 -0.752 -1.823 2.289 sum -11.688 6.141 7.210 15.043 Atomic orbital electron populations 1.21730 0.94442 1.02239 1.02299 1.21604 0.97314 0.92778 1.03805 1.22093 0.90608 0.96500 0.89372 0.89600 1.87963 1.88301 1.20716 1.30388 1.22858 0.99997 0.81144 1.02755 1.21375 0.91253 0.77196 0.82151 1.90730 1.64568 1.44255 1.39141 1.45946 1.06470 1.65634 1.18833 1.19992 0.80868 0.87106 0.99844 0.86617 1.22470 0.96341 0.97177 0.96815 1.23360 0.97438 0.74621 1.03660 1.22597 0.91616 0.92242 0.94213 1.45381 1.52350 1.15665 1.18855 1.18914 1.27378 0.91054 0.97933 0.89490 1.24872 0.99631 0.99441 0.95859 1.69815 1.37770 1.40407 1.08122 0.86061 0.79259 0.82345 0.77866 1.21258 1.21437 1.20387 1.22201 0.94219 0.90326 0.89115 1.46409 1.31579 1.06554 1.28496 1.22382 1.06087 0.82603 1.04665 1.22215 0.99156 0.99148 0.98059 1.69764 1.24152 1.02528 1.22811 1.24550 0.96405 0.93819 0.95105 0.91762 0.92707 0.92155 0.89912 0.90236 0.89381 0.93198 0.94089 0.76290 0.88667 0.86974 0.92662 0.94097 0.93254 0.94732 0.90145 0.81456 0.81346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.86 37.16 0.37 -0.68 16 2 C -0.12 -0.97 5.61 -26.73 -0.15 -1.12 16 3 C 0.08 0.80 2.51 -27.88 -0.07 0.73 16 4 H 0.09 0.75 7.84 -51.93 -0.41 0.34 16 5 O -0.36 -4.36 9.36 -55.09 -0.52 -4.88 16 6 C 0.03 0.29 10.79 101.05 1.09 1.38 16 7 C 0.50 6.81 7.08 -10.98 -0.08 6.73 16 8 O -0.51 -9.34 16.16 -14.30 -0.23 -9.58 16 9 N -0.71 -8.75 5.03 -53.56 -0.27 -9.02 16 10 C 0.23 3.35 3.29 -67.68 -0.22 3.13 16 11 H 0.12 1.80 7.56 -51.93 -0.39 1.41 16 12 C -0.09 -1.29 6.21 -25.60 -0.16 -1.45 16 13 C 0.09 1.65 1.66 -133.41 -0.22 1.43 16 14 C 0.12 2.31 8.15 -7.90 -0.06 2.24 16 15 N -0.60 -13.86 3.75 -184.71 -0.69 -14.55 16 16 C -0.23 -5.81 10.74 -15.06 -0.16 -5.97 16 17 H 0.09 2.15 7.83 -52.49 -0.41 1.74 16 18 C 0.00 -0.01 5.50 -17.43 -0.10 -0.10 16 19 N -0.92 -25.10 11.63 55.49 0.65 -24.45 16 20 Si 0.92 20.63 29.56 -169.99 -5.02 15.61 16 21 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 24 C 0.17 3.59 6.87 -7.78 -0.05 3.53 16 25 N -0.45 -7.65 3.41 -100.94 -0.34 -7.99 16 26 C -0.02 -0.37 12.03 -16.43 -0.20 -0.57 16 27 C -0.04 -0.59 11.86 -17.93 -0.21 -0.80 16 28 N -0.47 -8.67 11.25 -10.48 -0.12 -8.79 16 29 C 0.17 2.85 8.23 -154.55 -1.27 1.58 16 30 H 0.06 0.50 7.72 -51.93 -0.40 0.10 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.55 7.76 -51.93 -0.40 0.15 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.59 8.09 -51.93 -0.42 0.17 16 37 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.40 3.76 8.12 -40.82 -0.33 3.43 16 39 H 0.09 1.27 7.81 -51.93 -0.41 0.87 16 40 H 0.11 1.59 7.96 -51.93 -0.41 1.17 16 41 H 0.06 0.98 8.09 -51.93 -0.42 0.56 16 42 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 44 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.08 1.87 7.34 -51.93 -0.38 1.49 16 46 H 0.17 2.29 8.06 -52.48 -0.42 1.86 16 47 H 0.17 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 389.39 15.07 5.87 5.87 Total: -1.00 -33.48 389.39 -9.51 -42.99 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -7.33 Total: 4.74 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: -1.50 Total: 10.05 kcal Atomic # 7 Polarization: -64.02 SS G_CDS: -0.78 Total: -64.80 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -0.75 Total: -14.45 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.48 -9.51 -42.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101613570.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.922 kcal (2) G-P(sol) polarization free energy of solvation -33.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds