Wall clock time and date at job start Tue Mar 31 2020 19:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47153 * 2 1 4 4 H 1.08998 * 109.47031 * 305.30082 * 3 2 1 5 5 O 1.42904 * 109.47105 * 65.29944 * 3 2 1 6 6 C 1.42892 * 114.00035 * 208.95464 * 5 3 2 7 7 C 1.50698 * 109.46908 * 185.29564 * 3 2 1 8 8 O 1.21281 * 120.00354 * 244.99770 * 7 3 2 9 9 N 1.34780 * 119.99843 * 65.00554 * 7 3 2 10 10 C 1.46495 * 119.99960 * 179.97438 * 9 7 3 11 11 H 1.09005 * 110.51760 * 32.44437 * 10 9 7 12 12 C 1.54764 * 110.46755 * 154.99799 * 10 9 7 13 13 C 1.53382 * 101.45383 * 142.89831 * 12 10 9 14 14 C 1.52454 * 115.84788 * 106.82660 * 13 12 10 15 15 N 1.47265 * 87.71811 * 90.71979 * 14 13 12 16 16 C 1.36930 * 135.94150 * 206.21870 * 15 14 13 17 17 H 1.07992 * 120.00343 * 6.50982 * 16 15 14 18 18 C 1.38813 * 119.99571 * 186.78792 * 16 15 14 19 19 N 1.31622 * 120.00291 * 354.53071 * 18 16 15 20 20 Si 1.86805 * 120.00041 * 174.53768 * 18 16 15 21 21 H 1.48496 * 109.47255 * 94.98060 * 20 18 16 22 22 H 1.48500 * 109.46872 * 214.98483 * 20 18 16 23 23 H 1.48499 * 109.46699 * 334.97665 * 20 18 16 24 24 C 1.47263 * 88.11329 * 26.46799 * 15 14 13 25 25 N 1.46045 * 106.81366 * 335.19357 * 13 12 10 26 26 C 1.37271 * 142.31559 * 196.37693 * 25 13 12 27 27 C 1.34520 * 106.92709 * 179.88408 * 26 25 13 28 28 N 1.33974 * 108.04738 * 0.02562 * 27 26 25 29 29 C 1.30849 * 109.36169 * 0.04365 * 28 27 26 30 30 H 1.09003 * 109.46541 * 304.48987 * 1 2 3 31 31 H 1.09000 * 109.46866 * 64.48931 * 1 2 3 32 32 H 1.08991 * 109.47057 * 184.49460 * 1 2 3 33 33 H 1.09004 * 109.46839 * 239.99917 * 2 1 3 34 34 H 1.09003 * 109.47291 * 120.00121 * 2 1 3 35 35 H 1.09000 * 109.47580 * 184.85990 * 6 5 3 36 36 H 1.09000 * 109.46980 * 304.86174 * 6 5 3 37 37 H 1.09005 * 109.47214 * 64.86192 * 6 5 3 38 38 H 0.97000 * 119.99737 * 359.97438 * 9 7 3 39 39 H 1.08997 * 111.02406 * 24.85571 * 12 10 9 40 40 H 1.09003 * 111.06164 * 260.95686 * 12 10 9 41 41 H 1.09004 * 113.51511 * 336.01097 * 14 13 12 42 42 H 1.08992 * 113.57552 * 205.43772 * 14 13 12 43 43 H 0.96997 * 120.00246 * 179.97438 * 19 18 16 44 44 H 1.09006 * 113.50870 * 88.23840 * 24 15 14 45 45 H 1.08996 * 113.51683 * 218.81092 * 24 15 14 46 46 H 1.08004 * 126.53722 * 359.86579 * 26 25 13 47 47 H 1.08000 * 125.97566 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6013 1.9830 -0.8387 5 8 1.6681 2.0793 1.2240 6 6 1.4844 3.4919 1.1119 7 6 3.5413 1.4445 -0.1311 8 8 4.2290 1.8597 0.7775 9 7 4.1199 0.9849 -1.2584 10 6 5.5793 0.9873 -1.3861 11 1 6.0480 0.8247 -0.4155 12 6 6.0360 -0.0934 -2.3953 13 6 7.2087 0.6123 -3.0875 14 6 8.5994 0.1085 -2.7180 15 7 8.4919 -0.8357 -3.8430 16 6 9.0257 -2.0569 -4.1571 17 1 9.6267 -2.5861 -3.4325 18 6 8.7992 -2.6120 -5.4091 19 7 7.9848 -2.0175 -6.2551 20 14 9.6502 -4.2029 -5.8933 21 1 8.7506 -5.3507 -5.6128 22 1 9.9738 -4.1701 -7.3422 23 1 10.9027 -4.3525 -5.1097 24 6 7.5642 0.1107 -4.4853 25 7 6.9780 2.0479 -2.9507 26 6 7.3676 3.2638 -3.4550 27 6 6.6715 4.2043 -2.7913 28 7 5.8786 3.5862 -1.9058 29 6 6.0564 2.2928 -1.9930 30 1 -0.3632 0.5820 0.8471 31 1 -0.3633 0.4426 -0.9275 32 1 -0.3633 -1.0244 0.0805 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.2885 3.9124 2.0983 36 1 2.3854 3.9436 0.6968 37 1 0.6392 3.6974 0.4550 38 1 3.5700 0.6526 -1.9850 39 1 5.2432 -0.3240 -3.1069 40 1 6.3704 -0.9940 -1.8803 41 1 8.6408 -0.3787 -1.7439 42 1 9.3827 0.8548 -2.8501 43 1 7.8268 -2.4052 -7.1301 44 1 8.0635 0.8584 -5.1016 45 1 6.7343 -0.3746 -4.9988 46 1 8.0946 3.4330 -4.2356 47 1 6.7404 5.2711 -2.9449 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101613570.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:58 Heat of formation + Delta-G solvation = 35.538050 kcal Electronic energy + Delta-G solvation = -29611.586933 eV Core-core repulsion = 25604.392907 eV Total energy + Delta-G solvation = -4007.194026 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.66229 -41.09753 -40.28721 -38.57245 -36.78210 -35.11567 -34.44020 -33.55638 -31.91315 -29.74079 -29.26879 -28.57509 -27.10580 -26.83177 -25.70916 -23.78830 -23.09729 -22.69417 -21.68676 -21.09766 -20.18734 -18.92325 -18.69832 -18.10375 -17.37863 -17.35574 -16.79113 -16.35858 -16.18529 -15.79479 -15.71990 -15.56288 -15.26163 -14.96682 -14.86492 -14.76877 -14.55698 -14.30952 -13.91610 -13.65756 -13.40739 -13.29033 -13.25260 -12.94205 -12.87431 -12.75349 -12.60264 -12.45404 -12.06501 -12.03019 -12.00087 -11.68503 -11.60054 -11.57867 -10.96534 -10.93991 -10.44035 -10.41523 -10.30100 -9.36323 -9.09207 -8.00877 -5.35620 0.99059 1.47489 1.48038 1.51473 1.57377 1.66927 1.91189 2.25170 2.44497 2.77972 2.85638 3.14377 3.20400 3.28660 3.49367 3.55332 3.72035 3.91754 3.97380 4.03903 4.13552 4.20571 4.39858 4.46779 4.54073 4.54521 4.56158 4.61384 4.64431 4.68820 4.72751 4.81403 4.84349 4.90229 5.02842 5.06389 5.14394 5.21575 5.27658 5.34446 5.43497 5.47419 5.75666 5.88465 6.00152 6.08926 6.47488 6.80106 7.13412 7.19279 7.48985 8.41333 9.16853 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013930 B = 0.003161 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.507984 B = 8855.752061 C =10274.240274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C 0.079 3.921 4 H 0.110 0.890 5 O -0.377 6.377 6 C 0.027 3.973 7 C 0.493 3.507 8 O -0.564 6.564 9 N -0.701 5.701 10 C 0.237 3.763 11 H 0.107 0.893 12 C -0.079 4.079 13 C 0.118 3.882 14 C 0.121 3.879 15 N -0.619 5.619 16 C -0.233 4.233 17 H 0.092 0.908 18 C -0.053 4.053 19 N -0.946 5.946 20 Si 0.978 3.022 21 H -0.281 1.281 22 H -0.297 1.297 23 H -0.270 1.270 24 C 0.171 3.829 25 N -0.456 5.456 26 C -0.034 4.034 27 C -0.037 4.037 28 N -0.502 5.502 29 C 0.157 3.843 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.102 0.898 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.026 0.974 37 H 0.067 0.933 38 H 0.418 0.582 39 H 0.110 0.890 40 H 0.120 0.880 41 H 0.073 0.927 42 H 0.039 0.961 43 H 0.252 0.748 44 H 0.017 0.983 45 H 0.059 0.941 46 H 0.186 0.814 47 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.075 6.395 8.183 17.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.152 4.152 3 C 0.017 3.983 4 H 0.128 0.872 5 O -0.294 6.294 6 C -0.069 4.069 7 C 0.280 3.720 8 O -0.441 6.441 9 N -0.356 5.356 10 C 0.129 3.871 11 H 0.125 0.875 12 C -0.118 4.118 13 C 0.033 3.967 14 C -0.006 4.006 15 N -0.345 5.345 16 C -0.361 4.361 17 H 0.110 0.890 18 C -0.247 4.247 19 N -0.593 5.593 20 Si 0.805 3.195 21 H -0.208 1.208 22 H -0.223 1.223 23 H -0.195 1.195 24 C 0.044 3.956 25 N -0.139 5.139 26 C -0.166 4.166 27 C -0.185 4.185 28 N -0.222 5.222 29 C -0.107 4.107 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.121 0.879 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.045 0.955 37 H 0.085 0.915 38 H 0.256 0.744 39 H 0.128 0.872 40 H 0.138 0.862 41 H 0.091 0.909 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.035 0.965 45 H 0.077 0.923 46 H 0.203 0.797 47 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -13.930 6.588 9.213 17.953 hybrid contribution 1.524 -0.539 -1.857 2.462 sum -12.406 6.049 7.356 15.640 Atomic orbital electron populations 1.21707 0.93203 1.02837 1.02584 1.21657 0.98301 0.91132 1.04121 1.22280 0.88165 0.98129 0.89702 0.87243 1.87944 1.88158 1.21688 1.31605 1.22962 0.99838 0.80198 1.03942 1.22067 0.92565 0.75866 0.81453 1.90706 1.65906 1.46572 1.40887 1.45822 1.05650 1.64991 1.19129 1.19834 0.82187 0.85984 0.99078 0.87542 1.22469 0.95528 0.96984 0.96773 1.22969 0.97720 0.75373 1.00679 1.22683 0.92630 0.91490 0.93784 1.45578 1.52853 1.15784 1.20296 1.19264 1.26684 0.92036 0.98077 0.88998 1.25614 1.00544 1.02525 0.96056 1.69969 1.39268 1.41896 1.08170 0.85086 0.78524 0.79031 0.76811 1.20793 1.22333 1.19481 1.22040 0.93143 0.89617 0.90780 1.46428 1.31968 1.06472 1.28986 1.22818 1.06455 0.82249 1.05097 1.22728 0.98188 1.00510 0.97052 1.69781 1.25309 1.03208 1.23904 1.24975 0.96346 0.94259 0.95124 0.92726 0.91376 0.91215 0.87950 0.91597 0.88367 0.95486 0.91493 0.74377 0.87212 0.86189 0.90922 0.94349 0.93880 0.96503 0.92295 0.79705 0.78529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.86 71.98 0.71 -0.98 16 2 C -0.11 -1.66 5.61 30.60 0.17 -1.49 16 3 C 0.08 1.53 2.51 29.85 0.07 1.61 16 4 H 0.11 1.61 7.84 -2.39 -0.02 1.59 16 5 O -0.38 -8.85 9.36 -129.99 -1.22 -10.07 16 6 C 0.03 0.51 10.79 113.37 1.22 1.73 16 7 C 0.49 13.13 7.08 87.66 0.62 13.75 16 8 O -0.56 -20.64 16.16 15.96 0.26 -20.38 16 9 N -0.70 -16.11 5.03 -441.76 -2.22 -18.33 16 10 C 0.24 6.68 3.29 45.16 0.15 6.83 16 11 H 0.11 3.26 7.56 -2.38 -0.02 3.24 16 12 C -0.08 -2.17 6.21 31.32 0.19 -1.98 16 13 C 0.12 4.04 1.66 3.92 0.01 4.04 16 14 C 0.12 4.52 8.15 83.46 0.68 5.20 16 15 N -0.62 -28.64 3.75 -738.31 -2.77 -31.41 16 16 C -0.23 -11.90 10.74 84.03 0.90 -10.99 16 17 H 0.09 4.47 7.83 -2.91 -0.02 4.45 16 18 C -0.05 -2.77 5.50 84.86 0.47 -2.31 16 19 N -0.95 -52.41 11.63 21.65 0.25 -52.16 16 20 Si 0.98 42.28 29.56 68.60 2.03 44.31 16 21 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.30 -13.12 7.11 99.48 0.71 -12.42 16 23 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 24 C 0.17 7.34 6.87 83.54 0.57 7.92 16 25 N -0.46 -15.14 3.41 -473.27 -1.61 -16.76 16 26 C -0.03 -1.03 12.03 82.99 1.00 -0.03 16 27 C -0.04 -1.12 11.86 83.51 0.99 -0.13 16 28 N -0.50 -17.92 11.25 -187.08 -2.10 -20.02 16 29 C 0.16 5.26 8.23 138.30 1.14 6.39 16 30 H 0.05 0.75 7.72 -2.39 -0.02 0.73 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.60 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.10 1.06 7.76 -2.38 -0.02 1.05 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.03 0.63 8.09 -2.39 -0.02 0.61 16 37 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 38 H 0.42 6.83 8.12 -92.71 -0.75 6.07 16 39 H 0.11 2.73 7.81 -2.39 -0.02 2.71 16 40 H 0.12 3.18 7.96 -2.39 -0.02 3.16 16 41 H 0.07 2.48 8.09 -2.39 -0.02 2.46 16 42 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 44 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 45 H 0.06 2.78 7.34 -2.39 -0.02 2.76 16 46 H 0.19 4.84 8.06 -2.91 -0.02 4.82 16 47 H 0.20 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -72.85 389.39 1.73 -71.12 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 0.22 Total: 24.14 kcal Atomic # 6 Polarization: 20.66 SS G_CDS: 8.90 Total: 29.56 kcal Atomic # 7 Polarization: -130.22 SS G_CDS: -8.46 Total: -138.68 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -0.96 Total: -30.44 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -72.85 1.73 -71.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101613570.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.653 kcal (2) G-P(sol) polarization free energy of solvation -72.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds