Wall clock time and date at job start Tue Mar 31 2020 17:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47504 * 2 1 4 4 C 1.50708 * 109.47169 * 120.00113 * 2 1 3 5 5 N 1.29941 * 126.28356 * 300.02883 * 4 2 1 6 6 O 1.21303 * 110.24637 * 179.68586 * 5 4 2 7 7 C 1.33641 * 109.81178 * 0.46276 * 6 5 4 8 8 C 1.50706 * 126.55116 * 179.80722 * 7 6 5 9 9 C 1.53001 * 109.46787 * 269.68679 * 8 7 6 10 10 C 1.50696 * 109.46656 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00441 * 359.97438 * 10 9 8 12 12 N 1.34784 * 119.99921 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00006 * 179.97438 * 12 10 9 14 14 H 1.08999 * 115.51572 * 9.41697 * 13 12 10 15 15 C 1.52997 * 117.43874 * 223.99488 * 13 12 10 16 16 H 1.08995 * 119.54574 * 4.12179 * 15 13 12 17 17 C 1.54389 * 118.11735 * 160.81165 * 15 13 12 18 18 N 1.48146 * 104.61881 * 87.19207 * 17 15 13 19 19 C 1.36946 * 127.83697 * 140.41041 * 18 17 15 20 20 H 1.08002 * 119.99929 * 343.72389 * 19 18 17 21 21 C 1.38804 * 119.99715 * 163.72200 * 19 18 17 22 22 N 1.31626 * 120.00211 * 351.62076 * 21 19 18 23 23 Si 1.86797 * 119.99895 * 171.62248 * 21 19 18 24 24 H 1.48503 * 109.47190 * 94.98143 * 23 21 19 25 25 H 1.48507 * 109.47065 * 214.97906 * 23 21 19 26 26 H 1.48495 * 109.47447 * 334.98158 * 23 21 19 27 27 C 1.51684 * 104.54874 * 320.18535 * 18 17 15 28 28 C 1.52998 * 117.44119 * 154.82809 * 13 12 10 29 29 H 1.09003 * 119.54274 * 355.88105 * 28 13 12 30 30 N 1.31129 * 106.89744 * 359.53940 * 7 6 5 31 31 H 1.08993 * 109.47152 * 300.00307 * 1 2 3 32 32 H 1.08996 * 109.46796 * 60.00364 * 1 2 3 33 33 H 1.09003 * 109.47275 * 179.97438 * 1 2 3 34 34 H 1.09007 * 109.46974 * 239.99714 * 2 1 3 35 35 H 1.08997 * 109.47520 * 179.97438 * 3 2 1 36 36 H 1.09004 * 109.46772 * 299.99972 * 3 2 1 37 37 H 1.09001 * 109.46837 * 59.99735 * 3 2 1 38 38 H 1.08993 * 109.47073 * 149.68419 * 8 7 6 39 39 H 1.09007 * 109.46933 * 29.68678 * 8 7 6 40 40 H 1.08997 * 109.47330 * 299.99795 * 9 8 7 41 41 H 1.08998 * 109.46836 * 60.00039 * 9 8 7 42 42 H 0.97003 * 119.99521 * 359.97438 * 12 10 9 43 43 H 1.09005 * 110.40918 * 205.97785 * 17 15 13 44 44 H 1.08998 * 110.41362 * 328.40520 * 17 15 13 45 45 H 0.96999 * 119.99964 * 179.97438 * 22 21 19 46 46 H 1.08996 * 111.96632 * 281.13363 * 27 18 17 47 47 H 1.09003 * 110.49535 * 157.54801 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7945 -0.3750 2.4631 6 8 2.3361 -1.1515 3.2215 7 6 2.9991 -2.0784 2.5235 8 6 3.8058 -3.2198 3.0870 9 6 5.2567 -2.7732 3.2783 10 6 6.0635 -3.9147 3.8412 11 8 5.5305 -4.9804 4.0676 12 7 7.3772 -3.7511 4.0941 13 6 8.1615 -4.8606 4.6419 14 1 7.6554 -5.8257 4.6674 15 6 9.1322 -4.5430 5.7810 16 1 9.1651 -3.5347 6.1937 17 6 9.6225 -5.7093 6.6657 18 7 10.8088 -6.2432 5.9571 19 6 11.9855 -6.6833 6.5023 20 1 12.2369 -6.4289 7.5214 21 6 12.8549 -7.4562 5.7451 22 7 12.4800 -7.9046 4.5657 23 14 14.5571 -7.8602 6.4000 24 1 14.5277 -9.1844 7.0714 25 1 15.5246 -7.8975 5.2740 26 1 14.9721 -6.8200 7.3750 27 6 10.4277 -6.1995 4.4895 28 6 9.6673 -4.8611 4.3708 29 1 10.0987 -4.0898 3.7328 30 7 2.8087 -1.8085 1.2545 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 3.1301 1.4424 0.0005 36 1 1.6767 1.9562 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 3.7732 -4.0631 2.3973 39 1 3.3883 -3.5201 4.0482 40 1 5.6741 -2.4729 2.3172 41 1 5.2892 -1.9298 3.9680 42 1 7.8034 -2.8986 3.9133 43 1 9.9023 -5.3450 7.6543 44 1 8.8513 -6.4754 6.7464 45 1 13.0878 -8.4444 4.0365 46 1 9.7796 -7.0307 4.2117 47 1 11.3200 -6.1864 3.8637 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114657895.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:50 Heat of formation + Delta-G solvation = 79.733703 kcal Electronic energy + Delta-G solvation = -27276.387934 eV Core-core repulsion = 23271.110375 eV Total energy + Delta-G solvation = -4005.277559 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -45.93416 -39.99318 -38.36840 -37.27838 -35.61928 -34.44457 -33.82616 -32.67539 -31.24326 -30.14293 -27.73845 -27.17358 -26.50761 -25.31545 -24.98187 -23.28933 -21.82081 -20.63303 -20.42973 -20.10910 -19.24179 -18.43380 -17.93736 -17.16909 -16.88375 -16.30678 -15.94007 -15.50469 -15.20965 -14.72701 -14.54760 -14.09926 -13.94997 -13.81844 -13.46114 -13.26377 -12.93440 -12.80152 -12.77586 -12.73536 -12.22119 -12.17052 -12.09485 -11.70969 -11.62841 -11.54947 -11.51410 -11.47415 -11.25265 -11.01812 -10.84566 -10.46948 -10.29441 -10.24315 -10.16826 -9.92826 -9.70101 -9.24017 -8.76665 -8.40177 -6.88131 -5.80650 -3.14283 0.77859 1.86025 2.39198 2.49182 3.01666 3.23118 3.37765 3.43362 3.45247 3.66789 4.24890 4.26842 4.36831 4.45706 4.48790 4.50833 4.60146 4.67908 4.90248 5.05757 5.08206 5.11427 5.20163 5.26050 5.30204 5.31347 5.33494 5.36203 5.45033 5.53644 5.54971 5.62339 5.65098 5.76305 5.77446 5.86592 6.09491 6.17661 6.49916 6.67256 6.72581 6.86790 7.28033 7.45809 7.49891 7.68326 7.82974 8.13573 8.14273 9.05137 9.71661 10.48436 11.34562 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.038095 B = 0.001576 C = 0.001559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.829083 B =17761.416239 C =17951.611542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.005 4.005 3 C -0.145 4.145 4 C 0.175 3.825 5 N -0.382 5.382 6 O 0.078 5.922 7 C 0.186 3.814 8 C -0.012 4.012 9 C -0.138 4.138 10 C 0.520 3.480 11 O -0.537 6.537 12 N -0.696 5.696 13 C 0.094 3.906 14 H 0.133 0.867 15 C -0.182 4.182 16 H 0.103 0.897 17 C 0.158 3.842 18 N -0.598 5.598 19 C -0.226 4.226 20 H 0.077 0.923 21 C -0.006 4.006 22 N -0.916 5.916 23 Si 0.912 3.088 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.186 3.814 28 C -0.178 4.178 29 H 0.102 0.898 30 N -0.479 5.479 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.102 0.898 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.121 0.879 39 H 0.113 0.887 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.400 0.600 43 H 0.052 0.948 44 H 0.026 0.974 45 H 0.254 0.746 46 H 0.033 0.967 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.254 17.872 -8.417 29.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.025 4.025 3 C -0.203 4.203 4 C -0.099 4.099 5 N -0.089 5.089 6 O 0.019 5.981 7 C -0.034 4.034 8 C -0.052 4.052 9 C -0.179 4.179 10 C 0.305 3.695 11 O -0.413 6.413 12 N -0.344 5.344 13 C -0.012 4.012 14 H 0.151 0.849 15 C -0.203 4.203 16 H 0.121 0.879 17 C 0.031 3.969 18 N -0.323 5.323 19 C -0.354 4.354 20 H 0.094 0.906 21 C -0.203 4.203 22 N -0.563 5.563 23 Si 0.742 3.258 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.061 3.939 28 C -0.199 4.199 29 H 0.120 0.880 30 N -0.212 5.212 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.120 0.880 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.139 0.861 39 H 0.131 0.869 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.234 0.766 43 H 0.070 0.930 44 H 0.044 0.956 45 H 0.064 0.936 46 H 0.051 0.949 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.854 17.583 -8.500 29.309 hybrid contribution 1.264 0.239 0.276 1.316 sum -20.590 17.822 -8.225 28.446 Atomic orbital electron populations 1.21852 0.92828 1.02635 1.03028 1.19581 0.96452 0.95446 0.91012 1.21851 1.01534 0.93913 1.03032 1.25864 0.96653 0.92701 0.94632 1.74592 1.17738 1.13709 1.02872 1.85318 1.47663 1.29778 1.35316 1.28835 0.94609 0.94009 0.85959 1.19977 0.90866 0.90251 1.04085 1.21617 0.93787 0.98484 1.04038 1.20232 0.82163 0.89131 0.77933 1.90744 1.70449 1.27837 1.52303 1.45374 1.08893 1.15538 1.64579 1.21908 0.88416 0.91198 0.99679 0.84947 1.24363 1.02934 1.00889 0.92134 0.87914 1.21067 0.89974 0.91861 0.93985 1.46027 1.11734 1.73789 1.00735 1.19012 0.93256 1.25263 0.97853 0.90569 1.24889 0.99469 0.98413 0.97532 1.69886 1.35346 1.38704 1.12327 0.86109 0.83758 0.78202 0.77716 1.21511 1.21604 1.20548 1.21663 0.96899 0.88568 0.86758 1.24577 0.92786 1.03647 0.98883 0.88037 1.71949 1.17166 1.14038 1.18093 0.91851 0.90975 0.92249 0.87966 0.92218 0.90972 0.91858 0.86106 0.86876 0.87823 0.87996 0.76615 0.93003 0.95584 0.93566 0.94916 0.89147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.18 37.16 0.34 -0.51 16 2 C 0.00 -0.03 3.39 -91.77 -0.31 -0.34 16 3 C -0.15 -0.84 9.18 37.16 0.34 -0.50 16 4 C 0.17 1.72 6.72 -156.37 -1.05 0.67 16 5 N -0.38 -4.07 12.16 30.90 0.38 -3.70 16 6 O 0.08 0.77 11.31 18.11 0.20 0.98 16 7 C 0.19 1.69 7.77 -13.05 -0.10 1.59 16 8 C -0.01 -0.09 5.13 -27.88 -0.14 -0.24 16 9 C -0.14 -0.99 5.68 -27.88 -0.16 -1.15 16 10 C 0.52 5.92 7.83 -10.98 -0.09 5.84 16 11 O -0.54 -8.25 15.55 5.56 0.09 -8.16 16 12 N -0.70 -8.08 5.56 -53.81 -0.30 -8.38 16 13 C 0.09 1.47 5.97 -67.93 -0.41 1.06 16 14 H 0.13 2.39 7.40 -51.93 -0.38 2.00 16 15 C -0.18 -3.08 7.05 -89.30 -0.63 -3.71 16 16 H 0.10 1.55 8.14 -51.93 -0.42 1.12 16 17 C 0.16 3.26 7.05 -2.41 -0.02 3.24 16 18 N -0.60 -15.09 3.45 -165.83 -0.57 -15.66 16 19 C -0.23 -6.22 10.36 -15.06 -0.16 -6.37 16 20 H 0.08 2.03 7.84 -52.49 -0.41 1.62 16 21 C -0.01 -0.17 5.42 -17.43 -0.09 -0.26 16 22 N -0.92 -26.54 10.87 55.49 0.60 -25.94 16 23 Si 0.91 21.72 29.56 -169.99 -5.03 16.69 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 C 0.19 4.34 5.89 -0.38 0.00 4.34 16 28 C -0.18 -3.18 6.96 -89.29 -0.62 -3.80 16 29 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 30 N -0.48 -5.00 11.55 -9.87 -0.11 -5.11 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.10 0.65 8.14 -51.92 -0.42 0.23 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.12 0.97 8.10 -51.93 -0.42 0.55 16 39 H 0.11 0.78 8.10 -51.93 -0.42 0.36 16 40 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.40 3.48 8.83 -40.82 -0.36 3.12 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 46 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.09 2.35 6.64 -51.93 -0.34 2.00 16 LS Contribution 394.11 15.07 5.94 5.94 Total: -1.00 -33.25 394.11 -9.29 -42.54 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -7.40 Total: 0.96 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -3.10 Total: -0.15 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: -0.01 Total: -58.79 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: 0.29 Total: -7.18 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.25 -9.29 -42.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114657895.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.274 kcal (2) G-P(sol) polarization free energy of solvation -33.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds