Wall clock time and date at job start Tue Mar 31 2020 17:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47504 * 2 1 4 4 C 1.50708 * 109.47169 * 120.00113 * 2 1 3 5 5 N 1.29941 * 126.28356 * 300.02883 * 4 2 1 6 6 O 1.21303 * 110.24637 * 179.68586 * 5 4 2 7 7 C 1.33641 * 109.81178 * 0.46276 * 6 5 4 8 8 C 1.50706 * 126.55116 * 179.80722 * 7 6 5 9 9 C 1.53001 * 109.46787 * 269.68679 * 8 7 6 10 10 C 1.50696 * 109.46656 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00441 * 359.97438 * 10 9 8 12 12 N 1.34784 * 119.99921 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00006 * 179.97438 * 12 10 9 14 14 H 1.08999 * 115.51572 * 9.41697 * 13 12 10 15 15 C 1.52997 * 117.43874 * 223.99488 * 13 12 10 16 16 H 1.08995 * 119.54574 * 4.12179 * 15 13 12 17 17 C 1.54389 * 118.11735 * 160.81165 * 15 13 12 18 18 N 1.48146 * 104.61881 * 87.19207 * 17 15 13 19 19 C 1.36946 * 127.83697 * 140.41041 * 18 17 15 20 20 H 1.08002 * 119.99929 * 343.72389 * 19 18 17 21 21 C 1.38804 * 119.99715 * 163.72200 * 19 18 17 22 22 N 1.31626 * 120.00211 * 351.62076 * 21 19 18 23 23 Si 1.86797 * 119.99895 * 171.62248 * 21 19 18 24 24 H 1.48503 * 109.47190 * 94.98143 * 23 21 19 25 25 H 1.48507 * 109.47065 * 214.97906 * 23 21 19 26 26 H 1.48495 * 109.47447 * 334.98158 * 23 21 19 27 27 C 1.51684 * 104.54874 * 320.18535 * 18 17 15 28 28 C 1.52998 * 117.44119 * 154.82809 * 13 12 10 29 29 H 1.09003 * 119.54274 * 355.88105 * 28 13 12 30 30 N 1.31129 * 106.89744 * 359.53940 * 7 6 5 31 31 H 1.08993 * 109.47152 * 300.00307 * 1 2 3 32 32 H 1.08996 * 109.46796 * 60.00364 * 1 2 3 33 33 H 1.09003 * 109.47275 * 179.97438 * 1 2 3 34 34 H 1.09007 * 109.46974 * 239.99714 * 2 1 3 35 35 H 1.08997 * 109.47520 * 179.97438 * 3 2 1 36 36 H 1.09004 * 109.46772 * 299.99972 * 3 2 1 37 37 H 1.09001 * 109.46837 * 59.99735 * 3 2 1 38 38 H 1.08993 * 109.47073 * 149.68419 * 8 7 6 39 39 H 1.09007 * 109.46933 * 29.68678 * 8 7 6 40 40 H 1.08997 * 109.47330 * 299.99795 * 9 8 7 41 41 H 1.08998 * 109.46836 * 60.00039 * 9 8 7 42 42 H 0.97003 * 119.99521 * 359.97438 * 12 10 9 43 43 H 1.09005 * 110.40918 * 205.97785 * 17 15 13 44 44 H 1.08998 * 110.41362 * 328.40520 * 17 15 13 45 45 H 0.96999 * 119.99964 * 179.97438 * 22 21 19 46 46 H 1.08996 * 111.96632 * 281.13363 * 27 18 17 47 47 H 1.09003 * 110.49535 * 157.54801 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7945 -0.3750 2.4631 6 8 2.3361 -1.1515 3.2215 7 6 2.9991 -2.0784 2.5235 8 6 3.8058 -3.2198 3.0870 9 6 5.2567 -2.7732 3.2783 10 6 6.0635 -3.9147 3.8412 11 8 5.5305 -4.9804 4.0676 12 7 7.3772 -3.7511 4.0941 13 6 8.1615 -4.8606 4.6419 14 1 7.6554 -5.8257 4.6674 15 6 9.1322 -4.5430 5.7810 16 1 9.1651 -3.5347 6.1937 17 6 9.6225 -5.7093 6.6657 18 7 10.8088 -6.2432 5.9571 19 6 11.9855 -6.6833 6.5023 20 1 12.2369 -6.4289 7.5214 21 6 12.8549 -7.4562 5.7451 22 7 12.4800 -7.9046 4.5657 23 14 14.5571 -7.8602 6.4000 24 1 14.5277 -9.1844 7.0714 25 1 15.5246 -7.8975 5.2740 26 1 14.9721 -6.8200 7.3750 27 6 10.4277 -6.1995 4.4895 28 6 9.6673 -4.8611 4.3708 29 1 10.0987 -4.0898 3.7328 30 7 2.8087 -1.8085 1.2545 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 3.1301 1.4424 0.0005 36 1 1.6767 1.9562 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 3.7732 -4.0631 2.3973 39 1 3.3883 -3.5201 4.0482 40 1 5.6741 -2.4729 2.3172 41 1 5.2892 -1.9298 3.9680 42 1 7.8034 -2.8986 3.9133 43 1 9.9023 -5.3450 7.6543 44 1 8.8513 -6.4754 6.7464 45 1 13.0878 -8.4444 4.0365 46 1 9.7796 -7.0307 4.2117 47 1 11.3200 -6.1864 3.8637 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114657895.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:49 Heat of formation + Delta-G solvation = 56.801361 kcal Electronic energy + Delta-G solvation = -27277.382355 eV Core-core repulsion = 23271.110375 eV Total energy + Delta-G solvation = -4006.271980 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -46.66270 -41.10905 -39.75321 -37.89397 -36.34060 -35.92364 -34.52402 -34.23782 -32.27229 -31.63282 -28.88923 -28.17577 -27.84523 -26.66726 -25.64177 -24.10018 -23.29650 -21.92987 -21.43348 -20.94413 -20.76774 -19.19895 -18.83281 -18.64130 -18.03579 -17.58634 -16.71636 -16.68038 -16.09276 -15.93024 -15.63086 -15.20834 -14.96680 -14.74319 -14.57670 -14.44919 -14.41567 -13.70813 -13.61365 -13.49607 -13.29496 -13.21736 -13.16800 -12.86910 -12.72168 -12.66815 -12.63506 -12.27188 -12.21827 -12.12202 -12.10515 -12.01907 -11.85766 -11.82747 -11.61069 -11.09699 -10.90363 -10.80441 -10.66130 -9.67382 -8.90262 -7.90422 -5.26086 0.07126 1.14838 1.47943 1.48778 1.56175 1.58898 1.66639 2.09164 2.49700 2.57263 2.89107 3.01360 3.31152 3.52488 3.59856 3.78343 3.85453 3.92502 3.96855 3.99319 4.03378 4.08925 4.17151 4.29851 4.41403 4.52096 4.55836 4.67022 4.68110 4.69529 4.81931 4.82971 4.86850 4.92650 4.95150 4.97652 5.01939 5.05087 5.21179 5.27602 5.30510 5.42709 5.46936 5.57300 5.66014 6.14480 6.54772 6.97118 7.12198 7.24805 7.66670 8.46756 9.24346 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.038095 B = 0.001576 C = 0.001559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.829083 B =17761.416239 C =17951.611542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.009 4.009 3 C -0.140 4.140 4 C 0.170 3.830 5 N -0.400 5.400 6 O 0.072 5.928 7 C 0.196 3.804 8 C -0.009 4.009 9 C -0.123 4.123 10 C 0.521 3.479 11 O -0.579 6.579 12 N -0.684 5.684 13 C 0.119 3.881 14 H 0.107 0.893 15 C -0.166 4.166 16 H 0.136 0.864 17 C 0.150 3.850 18 N -0.623 5.623 19 C -0.239 4.239 20 H 0.081 0.919 21 C -0.063 4.063 22 N -0.949 5.949 23 Si 0.980 3.020 24 H -0.288 1.288 25 H -0.293 1.293 26 H -0.266 1.266 27 C 0.187 3.813 28 C -0.179 4.179 29 H 0.126 0.874 30 N -0.500 5.500 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.051 0.949 34 H 0.109 0.891 35 H 0.053 0.947 36 H 0.093 0.907 37 H 0.053 0.947 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.131 0.869 42 H 0.419 0.581 43 H 0.061 0.939 44 H 0.017 0.983 45 H 0.249 0.751 46 H 0.005 0.995 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.866 20.474 -8.484 31.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.029 4.029 3 C -0.198 4.198 4 C -0.103 4.103 5 N -0.109 5.109 6 O 0.016 5.984 7 C -0.024 4.024 8 C -0.048 4.048 9 C -0.164 4.164 10 C 0.309 3.691 11 O -0.458 6.458 12 N -0.334 5.334 13 C 0.012 3.988 14 H 0.125 0.875 15 C -0.187 4.187 16 H 0.154 0.846 17 C 0.024 3.976 18 N -0.349 5.349 19 C -0.368 4.368 20 H 0.099 0.901 21 C -0.257 4.257 22 N -0.597 5.597 23 Si 0.807 3.193 24 H -0.215 1.215 25 H -0.219 1.219 26 H -0.191 1.191 27 C 0.063 3.937 28 C -0.200 4.200 29 H 0.144 0.856 30 N -0.234 5.234 31 H 0.072 0.928 32 H 0.113 0.887 33 H 0.070 0.930 34 H 0.127 0.873 35 H 0.073 0.927 36 H 0.112 0.888 37 H 0.072 0.928 38 H 0.133 0.867 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.149 0.851 42 H 0.257 0.743 43 H 0.080 0.920 44 H 0.035 0.965 45 H 0.058 0.942 46 H 0.023 0.977 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.486 20.237 -8.552 31.437 hybrid contribution 1.357 -0.625 0.308 1.525 sum -21.129 19.611 -8.244 29.984 Atomic orbital electron populations 1.21830 0.92039 1.02339 1.03679 1.19791 0.97091 0.95921 0.90098 1.21824 1.01149 0.93178 1.03645 1.26405 0.96102 0.92503 0.95250 1.74587 1.18598 1.14409 1.03314 1.85295 1.47853 1.29947 1.35334 1.29012 0.94001 0.93711 0.85666 1.19998 0.91126 0.89474 1.04243 1.21563 0.92380 0.97155 1.05274 1.20927 0.81866 0.89523 0.76744 1.90744 1.71194 1.29921 1.53940 1.45190 1.08840 1.15137 1.64196 1.21384 0.87300 0.91763 0.98387 0.87514 1.24257 1.02854 1.00788 0.90773 0.84592 1.21208 0.88434 0.92885 0.95050 1.46360 1.12481 1.74059 1.01981 1.19410 0.94292 1.24885 0.98177 0.90097 1.25725 1.03176 0.98828 0.97944 1.70085 1.36366 1.39644 1.13574 0.85057 0.79135 0.77990 0.77081 1.21502 1.21922 1.19103 1.21397 0.95725 0.90854 0.85755 1.24246 0.94191 1.01062 1.00512 0.85638 1.71969 1.17990 1.14614 1.18792 0.92760 0.88733 0.93004 0.87305 0.92739 0.88811 0.92763 0.86673 0.86162 0.86067 0.85114 0.74296 0.92008 0.96511 0.94156 0.97692 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.18 71.98 0.66 -0.79 16 2 C -0.01 -0.11 3.39 -11.54 -0.04 -0.15 16 3 C -0.14 -1.39 9.18 71.98 0.66 -0.73 16 4 C 0.17 3.16 6.72 138.47 0.93 4.09 16 5 N -0.40 -8.14 12.16 -60.34 -0.73 -8.87 16 6 O 0.07 1.34 11.31 74.85 0.85 2.19 16 7 C 0.20 3.23 7.77 88.38 0.69 3.91 16 8 C -0.01 -0.12 5.13 29.85 0.15 0.03 16 9 C -0.12 -1.35 5.68 29.85 0.17 -1.18 16 10 C 0.52 10.59 7.83 87.65 0.69 11.28 16 11 O -0.58 -17.17 15.55 -3.03 -0.05 -17.21 16 12 N -0.68 -13.81 5.56 -442.54 -2.46 -16.27 16 13 C 0.12 3.56 5.97 44.99 0.27 3.83 16 14 H 0.11 3.87 7.40 -2.39 -0.02 3.85 16 15 C -0.17 -5.27 7.05 -9.94 -0.07 -5.34 16 16 H 0.14 3.50 8.14 -2.39 -0.02 3.48 16 17 C 0.15 6.14 7.05 86.53 0.61 6.75 16 18 N -0.62 -32.01 3.45 -678.56 -2.34 -34.35 16 19 C -0.24 -13.33 10.36 84.03 0.87 -12.46 16 20 H 0.08 4.31 7.84 -2.91 -0.02 4.29 16 21 C -0.06 -3.57 5.42 84.86 0.46 -3.11 16 22 N -0.95 -56.90 10.87 21.65 0.24 -56.67 16 23 Si 0.98 45.24 29.56 68.60 2.03 47.27 16 24 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 25 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 27 C 0.19 9.05 5.89 85.83 0.51 9.56 16 28 C -0.18 -6.23 6.96 -9.93 -0.07 -6.30 16 29 H 0.13 3.78 8.14 -2.39 -0.02 3.76 16 30 N -0.50 -9.75 11.55 -303.22 -3.50 -13.26 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 37 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.12 1.69 8.10 -2.39 -0.02 1.67 16 39 H 0.12 1.43 8.10 -2.38 -0.02 1.41 16 40 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.42 5.48 8.83 -92.71 -0.82 4.66 16 43 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 44 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 46 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 47 H 0.06 3.15 6.64 -2.39 -0.02 3.13 16 Total: -1.00 -74.99 394.11 0.67 -74.32 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.16 Total: 13.47 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 6.48 Total: 9.38 kcal Atomic # 7 Polarization: -120.62 SS G_CDS: -8.80 Total: -129.42 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: 0.80 Total: -15.03 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -74.99 0.67 -74.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114657895.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.121 kcal (2) G-P(sol) polarization free energy of solvation -74.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds