Wall clock time and date at job start Tue Mar 31 2020 17:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46940 * 2 1 4 4 C 1.53000 * 109.47083 * 240.00178 * 2 1 3 5 5 C 1.50693 * 109.47373 * 59.99713 * 4 2 1 6 6 H 1.08002 * 119.99743 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00484 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99844 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00484 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47263 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47321 * 120.00323 * 9 7 5 12 12 H 1.48503 * 109.47295 * 240.00416 * 9 7 5 13 13 C 1.52999 * 109.46822 * 120.00152 * 2 1 3 14 14 N 1.46504 * 109.47397 * 299.99653 * 13 2 1 15 15 C 1.34769 * 120.00054 * 180.02562 * 14 13 2 16 16 O 1.21370 * 120.00300 * 0.02562 * 15 14 13 17 17 C 1.49306 * 120.00013 * 180.02562 * 15 14 13 18 18 O 1.21392 * 119.99946 * 359.97438 * 17 15 14 19 19 N 1.34777 * 120.00299 * 180.02562 * 17 15 14 20 20 C 1.39202 * 120.00252 * 179.97438 * 19 17 15 21 21 C 1.36217 * 126.26917 * 0.02562 * 20 19 17 22 22 C 1.39695 * 107.85460 * 179.97438 * 21 20 19 23 23 N 1.30845 * 108.45893 * 0.02562 * 22 21 20 24 24 N 1.35853 * 126.27029 * 180.02562 * 20 19 17 25 25 C 1.46497 * 126.10142 * 359.97438 * 24 20 19 26 26 C 1.52996 * 117.50158 * 188.62792 * 25 24 20 27 27 C 1.52997 * 117.49999 * 119.99894 * 25 24 20 28 28 H 1.09002 * 109.46949 * 299.99825 * 1 2 3 29 29 H 1.08994 * 109.47028 * 59.99740 * 1 2 3 30 30 H 1.08998 * 109.46849 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46939 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47472 * 299.99988 * 3 2 1 33 33 H 1.09002 * 109.47157 * 60.00302 * 3 2 1 34 34 H 1.09000 * 109.46989 * 180.02562 * 4 2 1 35 35 H 1.09006 * 109.47005 * 299.99937 * 4 2 1 36 36 H 0.96996 * 120.00129 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.46917 * 180.02562 * 13 2 1 38 38 H 1.08998 * 109.47507 * 60.00283 * 13 2 1 39 39 H 0.97003 * 119.99515 * 0.02562 * 14 13 2 40 40 H 0.97006 * 119.99567 * 359.97438 * 19 17 15 41 41 H 1.08004 * 126.07031 * 0.26793 * 21 20 19 42 42 H 1.07997 * 125.76503 * 179.97438 * 22 21 20 43 43 H 1.09002 * 115.54883 * 334.32741 * 25 24 20 44 44 H 1.09011 * 117.49513 * 359.97438 * 26 25 24 45 45 H 1.08995 * 117.50807 * 145.02004 * 26 25 24 46 46 H 1.08998 * 117.50134 * 214.97726 * 27 25 24 47 47 H 1.08998 * 117.50057 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8712 -0.4815 -3.7319 8 7 2.6273 -1.5508 -3.8526 9 14 1.2491 0.3994 -5.2571 10 1 0.4245 1.5664 -4.8530 11 1 2.4044 0.8662 -6.0650 12 1 0.4243 -0.5338 -6.0660 13 6 2.0400 -0.7213 1.2492 14 7 1.5517 -0.0307 2.4455 15 6 1.8777 -0.4909 3.6695 16 8 2.5761 -1.4772 3.7809 17 6 1.3796 0.2126 4.8886 18 8 0.6814 1.1994 4.7773 19 7 1.7060 -0.2473 6.1127 20 6 1.2420 0.4089 7.2493 21 6 0.4546 1.5202 7.2732 22 6 0.2208 1.8508 8.6102 23 7 0.8388 0.9800 9.3665 24 7 1.4916 0.0584 8.5379 25 6 2.2987 -1.0808 8.9817 26 6 2.2878 -1.4155 10.4746 27 6 3.5288 -0.7830 9.8413 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1301 -0.7216 -1.2490 35 1 1.6767 -1.7489 -1.2493 36 1 2.8616 -1.8822 -4.7336 37 1 3.1300 -0.7209 1.2495 38 1 1.6767 -1.7489 1.2492 39 1 0.9938 0.7578 2.3564 40 1 2.2642 -1.0356 6.2017 41 1 0.0742 2.0487 6.4116 42 1 -0.3695 2.6846 8.9604 43 1 2.3645 -1.9122 8.2798 44 1 1.6804 -0.7876 11.1267 45 1 2.3464 -2.4671 10.7552 46 1 4.4038 -1.4186 9.7053 47 1 3.7379 0.2606 10.0763 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120889009.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:14 Heat of formation + Delta-G solvation = 35.733089 kcal Electronic energy + Delta-G solvation = -28153.062232 eV Core-core repulsion = 24145.876663 eV Total energy + Delta-G solvation = -4007.185569 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.93525 -40.63634 -38.89407 -37.46665 -37.29782 -35.53233 -33.75156 -32.16265 -31.31503 -29.56327 -27.44559 -26.84550 -26.57497 -24.85147 -23.89423 -23.03541 -22.88004 -21.64120 -20.60849 -20.17943 -19.17810 -18.42982 -17.48135 -16.90608 -16.42730 -16.36828 -15.80565 -15.68448 -15.27588 -15.19633 -14.54050 -14.44566 -14.25313 -14.09683 -13.54658 -13.40037 -13.23836 -13.17272 -12.86210 -12.28284 -12.11815 -12.08831 -11.86191 -11.62255 -11.45929 -11.25296 -11.18000 -11.07034 -10.88299 -10.84785 -10.70354 -10.51138 -10.30326 -9.97181 -9.90269 -9.26903 -9.15108 -9.10270 -8.98882 -8.46489 -8.40843 -6.04869 -4.06173 0.86466 1.50332 1.70435 2.30698 2.60423 3.02569 3.20428 3.27736 3.31770 3.36305 3.38922 3.92318 4.15929 4.23127 4.31866 4.41943 4.74461 4.82462 5.09195 5.10883 5.24030 5.30814 5.31682 5.42855 5.48319 5.53963 5.59216 5.65175 5.79642 6.04484 6.07721 6.11633 6.24426 6.28743 6.41410 6.50801 6.57405 6.60385 6.70257 6.97553 7.00705 7.02895 7.15550 7.42394 7.44332 7.57098 7.67916 7.83910 7.93592 8.34893 8.98618 9.57468 11.06550 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.030240 B = 0.001966 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.697895 B =14239.716909 C =14899.134197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.073 4.073 3 C -0.131 4.131 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.124 3.876 14 N -0.680 5.680 15 C 0.508 3.492 16 O -0.523 6.523 17 C 0.516 3.484 18 O -0.482 6.482 19 N -0.624 5.624 20 C 0.308 3.692 21 C -0.275 4.275 22 C 0.061 3.939 23 N -0.288 5.288 24 N -0.360 5.360 25 C 0.069 3.931 26 C -0.157 4.157 27 C -0.176 4.176 28 H 0.031 0.969 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.031 0.969 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.260 0.740 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.413 0.587 40 H 0.423 0.577 41 H 0.176 0.824 42 H 0.189 0.811 43 H 0.140 0.860 44 H 0.113 0.887 45 H 0.109 0.891 46 H 0.110 0.890 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.360 2.363 26.014 26.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.073 4.073 3 C -0.188 4.188 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.002 3.998 14 N -0.332 5.332 15 C 0.286 3.714 16 O -0.400 6.400 17 C 0.298 3.702 18 O -0.353 6.353 19 N -0.273 5.273 20 C 0.089 3.911 21 C -0.307 4.307 22 C -0.125 4.125 23 N -0.109 5.109 24 N -0.147 5.147 25 C -0.035 4.035 26 C -0.195 4.195 27 C -0.214 4.214 28 H 0.050 0.950 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.050 0.950 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.251 0.749 40 H 0.260 0.740 41 H 0.193 0.807 42 H 0.206 0.794 43 H 0.158 0.842 44 H 0.131 0.869 45 H 0.127 0.873 46 H 0.129 0.871 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.956 1.786 26.979 27.055 hybrid contribution -0.362 0.498 -1.756 1.861 sum -1.319 2.284 25.222 25.360 Atomic orbital electron populations 1.21802 0.95004 1.01345 1.00655 1.20950 0.95740 0.96021 0.94634 1.21800 1.00625 0.95722 1.00655 1.19100 0.96412 0.95245 0.89342 1.21205 1.31206 1.12125 0.90422 0.92103 1.25015 0.95285 0.95089 0.99154 1.69968 1.36945 1.23041 1.23406 0.86576 0.78611 0.79693 0.83349 1.19751 1.21134 1.21129 1.21920 0.99481 0.96331 0.82066 1.46064 1.50794 1.31588 1.04783 1.19481 0.82429 0.85090 0.84363 1.90792 1.37232 1.25475 1.86462 1.20471 0.81034 0.84803 0.83903 1.90727 1.34439 1.24218 1.85912 1.42420 1.51043 1.31077 1.02799 1.18038 0.98574 0.94731 0.79761 1.21718 1.09349 1.00506 0.99095 1.23792 0.98536 0.98423 0.91781 1.77393 1.14541 1.02862 1.16134 1.48132 1.41545 1.23614 1.01384 1.21790 0.96985 0.88486 0.96204 1.23285 1.00697 1.02708 0.92786 1.23498 0.92330 1.03317 1.02298 0.95009 0.91127 0.93211 0.93214 0.91123 0.95015 0.96230 0.96231 0.93062 0.90837 0.90834 0.74922 0.73962 0.80712 0.79429 0.84215 0.86881 0.87256 0.87146 0.87835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 2 C -0.07 -1.31 0.54 -154.51 -0.08 -1.39 16 3 C -0.13 -2.20 8.05 37.15 0.30 -1.90 16 4 C 0.04 0.85 4.04 -27.89 -0.11 0.74 16 5 C -0.51 -13.16 7.65 -34.45 -0.26 -13.43 16 6 H 0.06 1.51 5.68 -52.49 -0.30 1.22 16 7 C 0.06 1.51 5.46 -17.82 -0.10 1.42 16 8 N -0.89 -25.77 13.29 55.43 0.74 -25.03 16 9 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.12 1.98 4.56 -4.04 -0.02 1.96 16 14 N -0.68 -9.32 4.95 -60.78 -0.30 -9.62 16 15 C 0.51 6.85 7.88 -11.66 -0.09 6.76 16 16 O -0.52 -7.99 16.48 5.48 0.09 -7.90 16 17 C 0.52 6.31 7.85 -11.65 -0.09 6.22 16 18 O -0.48 -6.48 13.60 5.46 0.07 -6.41 16 19 N -0.62 -6.55 5.40 -11.80 -0.06 -6.61 16 20 C 0.31 3.49 7.68 -152.85 -1.17 2.32 16 21 C -0.28 -3.19 9.65 -39.76 -0.38 -3.57 16 22 C 0.06 0.61 12.00 -17.43 -0.21 0.40 16 23 N -0.29 -3.20 11.98 30.59 0.37 -2.84 16 24 N -0.36 -3.73 3.97 -53.81 -0.21 -3.94 16 25 C 0.07 0.50 6.67 -67.94 -0.45 0.05 16 26 C -0.16 -0.94 10.19 -26.73 -0.27 -1.21 16 27 C -0.18 -1.06 10.46 -26.73 -0.28 -1.34 16 28 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 29 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 33 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.41 5.29 5.63 -40.82 -0.23 5.06 16 40 H 0.42 3.65 7.58 -40.82 -0.31 3.34 16 41 H 0.18 2.13 5.83 -52.48 -0.31 1.82 16 42 H 0.19 1.23 8.06 -52.49 -0.42 0.81 16 43 H 0.14 0.74 7.69 -51.93 -0.40 0.34 16 44 H 0.11 0.83 7.83 -51.92 -0.41 0.42 16 45 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 388.08 15.07 5.85 5.85 Total: -1.00 -31.05 388.08 -8.13 -39.18 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -6.71 Total: 6.40 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -2.93 Total: -4.89 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: 0.52 Total: -48.04 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.16 Total: -14.30 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.05 -8.13 -39.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120889009.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.909 kcal (2) G-P(sol) polarization free energy of solvation -31.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds