Wall clock time and date at job start Tue Mar 31 2020 17:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46940 * 2 1 4 4 C 1.53000 * 109.47083 * 240.00178 * 2 1 3 5 5 C 1.50693 * 109.47373 * 59.99713 * 4 2 1 6 6 H 1.08002 * 119.99743 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00484 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99844 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00484 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47263 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47321 * 120.00323 * 9 7 5 12 12 H 1.48503 * 109.47295 * 240.00416 * 9 7 5 13 13 C 1.52999 * 109.46822 * 120.00152 * 2 1 3 14 14 N 1.46504 * 109.47397 * 299.99653 * 13 2 1 15 15 C 1.34769 * 120.00054 * 180.02562 * 14 13 2 16 16 O 1.21370 * 120.00300 * 0.02562 * 15 14 13 17 17 C 1.49306 * 120.00013 * 180.02562 * 15 14 13 18 18 O 1.21392 * 119.99946 * 359.97438 * 17 15 14 19 19 N 1.34777 * 120.00299 * 180.02562 * 17 15 14 20 20 C 1.39202 * 120.00252 * 179.97438 * 19 17 15 21 21 C 1.36217 * 126.26917 * 0.02562 * 20 19 17 22 22 C 1.39695 * 107.85460 * 179.97438 * 21 20 19 23 23 N 1.30845 * 108.45893 * 0.02562 * 22 21 20 24 24 N 1.35853 * 126.27029 * 180.02562 * 20 19 17 25 25 C 1.46497 * 126.10142 * 359.97438 * 24 20 19 26 26 C 1.52996 * 117.50158 * 188.62792 * 25 24 20 27 27 C 1.52997 * 117.49999 * 119.99894 * 25 24 20 28 28 H 1.09002 * 109.46949 * 299.99825 * 1 2 3 29 29 H 1.08994 * 109.47028 * 59.99740 * 1 2 3 30 30 H 1.08998 * 109.46849 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46939 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47472 * 299.99988 * 3 2 1 33 33 H 1.09002 * 109.47157 * 60.00302 * 3 2 1 34 34 H 1.09000 * 109.46989 * 180.02562 * 4 2 1 35 35 H 1.09006 * 109.47005 * 299.99937 * 4 2 1 36 36 H 0.96996 * 120.00129 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.46917 * 180.02562 * 13 2 1 38 38 H 1.08998 * 109.47507 * 60.00283 * 13 2 1 39 39 H 0.97003 * 119.99515 * 0.02562 * 14 13 2 40 40 H 0.97006 * 119.99567 * 359.97438 * 19 17 15 41 41 H 1.08004 * 126.07031 * 0.26793 * 21 20 19 42 42 H 1.07997 * 125.76503 * 179.97438 * 22 21 20 43 43 H 1.09002 * 115.54883 * 334.32741 * 25 24 20 44 44 H 1.09011 * 117.49513 * 359.97438 * 26 25 24 45 45 H 1.08995 * 117.50807 * 145.02004 * 26 25 24 46 46 H 1.08998 * 117.50134 * 214.97726 * 27 25 24 47 47 H 1.08998 * 117.50057 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8712 -0.4815 -3.7319 8 7 2.6273 -1.5508 -3.8526 9 14 1.2491 0.3994 -5.2571 10 1 0.4245 1.5664 -4.8530 11 1 2.4044 0.8662 -6.0650 12 1 0.4243 -0.5338 -6.0660 13 6 2.0400 -0.7213 1.2492 14 7 1.5517 -0.0307 2.4455 15 6 1.8777 -0.4909 3.6695 16 8 2.5761 -1.4772 3.7809 17 6 1.3796 0.2126 4.8886 18 8 0.6814 1.1994 4.7773 19 7 1.7060 -0.2473 6.1127 20 6 1.2420 0.4089 7.2493 21 6 0.4546 1.5202 7.2732 22 6 0.2208 1.8508 8.6102 23 7 0.8388 0.9800 9.3665 24 7 1.4916 0.0584 8.5379 25 6 2.2987 -1.0808 8.9817 26 6 2.2878 -1.4155 10.4746 27 6 3.5288 -0.7830 9.8413 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1301 -0.7216 -1.2490 35 1 1.6767 -1.7489 -1.2493 36 1 2.8616 -1.8822 -4.7336 37 1 3.1300 -0.7209 1.2495 38 1 1.6767 -1.7489 1.2492 39 1 0.9938 0.7578 2.3564 40 1 2.2642 -1.0356 6.2017 41 1 0.0742 2.0487 6.4116 42 1 -0.3695 2.6846 8.9604 43 1 2.3645 -1.9122 8.2798 44 1 1.6804 -0.7876 11.1267 45 1 2.3464 -2.4671 10.7552 46 1 4.4038 -1.4186 9.7053 47 1 3.7379 0.2606 10.0763 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120889009.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:13 Heat of formation + Delta-G solvation = 16.529449 kcal Electronic energy + Delta-G solvation = -28153.894964 eV Core-core repulsion = 24145.876663 eV Total energy + Delta-G solvation = -4008.018301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.78320 -41.63781 -39.99425 -38.69856 -37.99626 -36.49916 -35.23415 -33.95024 -32.05281 -30.43704 -29.19777 -28.20023 -27.96214 -26.10214 -24.69030 -24.45778 -23.46144 -22.62366 -21.45875 -21.16941 -20.21588 -19.47719 -18.60610 -18.32451 -17.95118 -17.41406 -16.73228 -16.50102 -16.39646 -16.20927 -16.04986 -15.52720 -15.42885 -14.93064 -14.80247 -14.75866 -14.38897 -14.10329 -13.93441 -13.84123 -13.77464 -12.92400 -12.89804 -12.67906 -12.61218 -12.53894 -12.38398 -12.32698 -12.23357 -12.16739 -11.96305 -11.78586 -11.55068 -11.54603 -11.13946 -10.88947 -10.77840 -10.49974 -10.32447 -9.85313 -9.31886 -8.12904 -6.19433 -0.11476 0.61963 0.84680 1.42351 1.44470 1.49495 1.55405 1.75982 2.04159 2.34711 2.46279 2.68138 3.16046 3.22175 3.36122 3.67651 3.84873 3.90686 4.06666 4.07102 4.15844 4.21230 4.34249 4.62125 4.66300 4.68128 4.70574 4.70683 4.74445 4.91861 4.96174 4.98954 5.04456 5.13835 5.13852 5.22996 5.43306 5.52566 5.54154 5.57930 5.61641 5.71900 5.80775 5.82093 5.92167 6.15534 6.33677 6.46667 6.63984 6.74896 6.95753 7.48066 8.99417 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.030240 B = 0.001966 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.697895 B =14239.716909 C =14899.134197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.066 4.066 3 C -0.126 4.126 4 C 0.041 3.959 5 C -0.512 4.512 6 H 0.071 0.929 7 C -0.004 4.004 8 N -0.936 5.936 9 Si 0.955 3.045 10 H -0.259 1.259 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.137 3.863 14 N -0.674 5.674 15 C 0.515 3.485 16 O -0.540 6.540 17 C 0.524 3.476 18 O -0.494 6.494 19 N -0.611 5.611 20 C 0.296 3.704 21 C -0.291 4.291 22 C 0.061 3.939 23 N -0.305 5.305 24 N -0.359 5.359 25 C 0.044 3.956 26 C -0.149 4.149 27 C -0.169 4.169 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.055 0.945 33 H 0.064 0.936 34 H -0.008 1.008 35 H -0.008 1.008 36 H 0.259 0.741 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.420 0.580 40 H 0.431 0.569 41 H 0.168 0.832 42 H 0.218 0.782 43 H 0.160 0.840 44 H 0.097 0.903 45 H 0.133 0.867 46 H 0.133 0.867 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.043 3.230 27.506 27.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.066 4.066 3 C -0.184 4.184 4 C 0.003 3.997 5 C -0.550 4.550 6 H 0.089 0.911 7 C -0.201 4.201 8 N -0.577 5.577 9 Si 0.781 3.219 10 H -0.183 1.183 11 H -0.212 1.212 12 H -0.211 1.211 13 C 0.014 3.986 14 N -0.327 5.327 15 C 0.294 3.706 16 O -0.418 6.418 17 C 0.306 3.694 18 O -0.365 6.365 19 N -0.261 5.261 20 C 0.076 3.924 21 C -0.323 4.323 22 C -0.124 4.124 23 N -0.127 5.127 24 N -0.146 5.146 25 C -0.058 4.058 26 C -0.187 4.187 27 C -0.207 4.207 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.010 0.990 35 H 0.010 0.990 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.259 0.741 40 H 0.271 0.729 41 H 0.186 0.814 42 H 0.234 0.766 43 H 0.178 0.822 44 H 0.116 0.884 45 H 0.151 0.849 46 H 0.151 0.849 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.643 2.662 28.511 28.682 hybrid contribution -0.124 0.202 -2.117 2.130 sum -1.767 2.864 26.394 26.608 Atomic orbital electron populations 1.21742 0.93773 1.01294 1.01561 1.20738 0.96625 0.96286 0.92970 1.21740 1.00286 0.94785 1.01559 1.18966 0.94615 0.94341 0.91774 1.21624 1.30235 1.12004 0.91153 0.91134 1.25889 0.95769 0.95908 1.02547 1.70105 1.38779 1.24872 1.23970 0.85541 0.78013 0.78826 0.79522 1.18283 1.21162 1.21150 1.21548 0.98958 0.95878 0.82226 1.45838 1.50944 1.31674 1.04230 1.19605 0.81789 0.84669 0.84542 1.90791 1.37945 1.26278 1.86740 1.20051 0.81000 0.84530 0.83867 1.90735 1.35092 1.24678 1.86041 1.42230 1.50613 1.31074 1.02155 1.18121 0.98985 0.95036 0.80260 1.21803 1.09935 1.00927 0.99593 1.24265 0.98246 0.98849 0.91085 1.77363 1.15074 1.03431 1.16855 1.48360 1.41352 1.23962 1.00881 1.22282 0.97629 0.88393 0.97524 1.23337 1.00107 1.03794 0.91454 1.23526 0.92856 1.02888 1.01400 0.91682 0.92561 0.93792 0.93802 0.92555 0.91692 0.98959 0.98955 0.93211 0.91546 0.91527 0.74085 0.72919 0.81436 0.76584 0.82234 0.88438 0.84851 0.84888 0.89447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 8.05 71.98 0.58 -3.50 16 2 C -0.07 -2.32 0.54 -52.18 -0.03 -2.35 16 3 C -0.13 -4.08 8.05 71.98 0.58 -3.51 16 4 C 0.04 1.95 4.04 29.85 0.12 2.07 16 5 C -0.51 -26.58 7.65 25.60 0.20 -26.38 16 6 H 0.07 3.47 5.68 -2.91 -0.02 3.45 16 7 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 8 N -0.94 -55.34 13.29 21.44 0.28 -55.05 16 9 Si 0.95 42.92 29.54 68.60 2.03 44.95 16 10 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 11 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 13 C 0.14 4.29 4.56 86.38 0.39 4.69 16 14 N -0.67 -17.30 4.95 -464.56 -2.30 -19.60 16 15 C 0.51 13.09 7.88 87.23 0.69 13.78 16 16 O -0.54 -15.83 16.48 -3.31 -0.05 -15.88 16 17 C 0.52 11.98 7.85 87.22 0.68 12.67 16 18 O -0.49 -12.46 13.60 -3.38 -0.05 -12.51 16 19 N -0.61 -11.92 5.40 -309.58 -1.67 -13.59 16 20 C 0.30 6.34 7.68 131.25 1.01 7.35 16 21 C -0.29 -6.44 9.65 22.15 0.21 -6.22 16 22 C 0.06 1.15 12.00 85.19 1.02 2.17 16 23 N -0.31 -6.48 11.98 -57.14 -0.68 -7.16 16 24 N -0.36 -6.99 3.97 -324.14 -1.29 -8.28 16 25 C 0.04 0.57 6.67 44.99 0.30 0.87 16 26 C -0.15 -1.52 10.19 30.60 0.31 -1.21 16 27 C -0.17 -1.74 10.46 30.60 0.32 -1.42 16 28 H 0.06 1.66 6.86 -2.39 -0.02 1.64 16 29 H 0.06 1.98 6.62 -2.39 -0.02 1.96 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.98 6.62 -2.39 -0.02 1.97 16 33 H 0.06 1.66 6.86 -2.39 -0.02 1.64 16 34 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 35 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 36 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 37 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.42 9.65 5.63 -92.71 -0.52 9.13 16 40 H 0.43 6.73 7.58 -92.70 -0.70 6.03 16 41 H 0.17 3.93 5.83 -2.91 -0.02 3.91 16 42 H 0.22 2.44 8.06 -2.91 -0.02 2.42 16 43 H 0.16 1.32 7.69 -2.39 -0.02 1.31 16 44 H 0.10 1.33 7.83 -2.38 -0.02 1.32 16 45 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -67.65 388.08 2.91 -64.74 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: -0.21 Total: 23.15 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 6.85 Total: -0.76 kcal Atomic # 7 Polarization: -98.03 SS G_CDS: -5.66 Total: -103.69 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.10 Total: -28.39 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -67.65 2.91 -64.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120889009.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.272 kcal (2) G-P(sol) polarization free energy of solvation -67.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds