Wall clock time and date at job start Tue Mar 31 2020 18:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47369 * 2 1 4 4 C 1.53002 * 109.46898 * 239.99962 * 2 1 3 5 5 C 1.50700 * 109.47171 * 120.00193 * 2 1 3 6 6 O 1.20781 * 119.99560 * 359.97438 * 5 2 1 7 7 C 1.49086 * 119.99958 * 179.97438 * 5 2 1 8 8 O 1.21362 * 119.99826 * 0.02562 * 7 5 2 9 9 N 1.34778 * 119.99683 * 179.97438 * 7 5 2 10 10 C 1.46504 * 119.99681 * 179.97438 * 9 7 5 11 11 C 1.50699 * 109.46853 * 179.97438 * 10 9 7 12 12 C 1.40073 * 126.12443 * 259.87822 * 11 10 9 13 13 N 1.31016 * 108.25278 * 179.83938 * 12 11 10 14 14 N 1.39746 * 108.17893 * 0.35712 * 13 12 11 15 15 C 1.34642 * 126.12213 * 80.00621 * 11 10 9 16 16 C 1.51042 * 127.91181 * 359.67789 * 15 11 10 17 17 N 1.47502 * 106.99911 * 169.72456 * 16 15 11 18 18 C 1.36935 * 121.00921 * 222.89840 * 17 16 15 19 19 H 1.08006 * 119.99822 * 155.91133 * 18 17 16 20 20 C 1.38810 * 120.00372 * 335.91985 * 18 17 16 21 21 N 1.31616 * 119.99791 * 344.46029 * 20 18 17 22 22 Si 1.86801 * 120.00237 * 164.46376 * 20 18 17 23 23 H 1.48504 * 109.47067 * 59.99674 * 22 20 18 24 24 H 1.48499 * 109.47175 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46938 * 299.99878 * 22 20 18 26 26 C 1.47087 * 117.97661 * 42.92530 * 17 16 15 27 27 C 1.46547 * 127.32582 * 179.45335 * 14 13 12 28 28 H 1.08998 * 109.46817 * 300.00240 * 1 2 3 29 29 H 1.09001 * 109.46828 * 59.99511 * 1 2 3 30 30 H 1.08994 * 109.47315 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47253 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.46857 * 300.00157 * 3 2 1 33 33 H 1.09001 * 109.47009 * 59.99696 * 3 2 1 34 34 H 1.08994 * 109.47101 * 300.00085 * 4 2 1 35 35 H 1.09006 * 109.47208 * 59.99917 * 4 2 1 36 36 H 1.08998 * 109.47012 * 180.02562 * 4 2 1 37 37 H 0.96992 * 120.00124 * 359.97438 * 9 7 5 38 38 H 1.08997 * 109.47040 * 60.00068 * 10 9 7 39 39 H 1.08995 * 109.46963 * 299.99998 * 10 9 7 40 40 H 1.07995 * 125.87459 * 0.03643 * 12 11 10 41 41 H 1.08997 * 109.94720 * 289.10011 * 16 15 11 42 42 H 1.08994 * 109.94586 * 50.35420 * 16 15 11 43 43 H 0.97001 * 120.00162 * 180.02562 * 21 20 18 44 44 H 1.08996 * 109.51638 * 56.33228 * 26 17 16 45 45 H 1.08993 * 109.51397 * 176.49306 * 26 17 16 46 46 H 1.09003 * 109.50738 * 41.61264 * 27 14 13 47 47 H 1.09005 * 109.50863 * 281.47866 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0324 -0.7104 1.2304 6 8 1.2475 -1.1691 2.0256 7 6 3.4982 -0.8472 1.4660 8 8 4.2868 -0.3859 0.6672 9 7 3.9474 -1.4821 2.5668 10 6 5.3877 -1.6169 2.7980 11 6 5.6219 -2.3600 4.0880 12 6 5.9478 -1.7867 5.3238 13 7 6.0680 -2.7497 6.2039 14 7 5.8310 -3.9649 5.5558 15 6 5.5578 -3.6940 4.2584 16 6 5.2363 -4.7473 3.2247 17 7 5.5352 -6.0563 3.8354 18 6 6.1821 -7.0338 3.1276 19 1 6.7326 -7.8033 3.6486 20 6 6.1306 -7.0358 1.7404 21 7 5.2322 -6.3056 1.1143 22 14 7.3361 -8.0748 0.7624 23 1 7.1693 -9.5040 1.1297 24 1 7.0735 -7.9033 -0.6891 25 1 8.7236 -7.6436 1.0692 26 6 5.1166 -6.2798 5.2277 27 6 5.8685 -5.3071 6.1427 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1393 36 1 3.1300 -0.7217 -1.2491 37 1 3.3171 -1.8497 3.2057 38 1 5.8396 -0.6271 2.8621 39 1 5.8380 -2.1692 1.9732 40 1 6.0747 -0.7320 5.5184 41 1 4.1814 -4.6946 2.9557 42 1 5.8547 -4.6003 2.3393 43 1 5.1959 -6.3072 0.1449 44 1 4.0439 -6.1086 5.3174 45 1 5.3480 -7.3048 5.5173 46 1 5.3934 -5.2889 7.1235 47 1 6.9044 -5.6307 6.2453 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128268423.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:58 Heat of formation + Delta-G solvation = 27.772817 kcal Electronic energy + Delta-G solvation = -29612.937677 eV Core-core repulsion = 25605.406925 eV Total energy + Delta-G solvation = -4007.530752 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.08997 -40.68493 -38.44813 -36.37249 -36.12688 -34.71087 -33.01287 -31.33415 -30.25659 -29.05246 -27.56911 -27.39788 -26.48221 -25.68745 -24.43603 -23.49000 -21.83202 -21.16342 -20.24742 -19.18040 -18.33578 -17.43401 -16.75167 -16.43530 -16.04959 -15.66864 -15.46982 -15.09782 -14.75404 -14.54018 -14.33378 -13.90056 -13.74446 -13.65328 -13.37714 -13.32410 -13.15021 -12.57408 -12.55952 -12.51294 -12.30218 -12.27296 -11.77577 -11.70704 -11.64097 -11.50124 -11.33763 -11.08532 -11.01413 -10.89513 -10.80761 -10.76278 -10.23931 -10.22216 -10.10642 -9.29049 -8.95171 -8.90781 -8.58599 -7.97823 -7.11077 -6.03678 -3.46591 1.05629 2.36127 2.70638 2.97151 3.12317 3.27801 3.33140 3.35187 3.35509 4.28414 4.29818 4.56577 4.74202 4.75178 4.91181 5.03647 5.17714 5.18944 5.33437 5.42471 5.43501 5.51756 5.52130 5.57820 5.64140 5.67941 5.71636 5.78703 5.80469 5.83059 5.96391 6.01411 6.13176 6.19398 6.21660 6.31837 6.40361 6.46883 6.51667 6.87392 6.88998 7.04004 7.10760 7.53478 7.56890 7.58562 8.06642 8.12786 8.19436 8.89455 9.51926 10.04605 11.07317 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010443 B = 0.003828 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.676988 B = 7312.746673 C = 8988.946337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.095 4.095 3 C -0.142 4.142 4 C -0.145 4.145 5 C 0.360 3.640 6 O -0.419 6.419 7 C 0.474 3.526 8 O -0.512 6.512 9 N -0.692 5.692 10 C 0.207 3.793 11 C -0.293 4.293 12 C 0.058 3.942 13 N -0.317 5.317 14 N -0.357 5.357 15 C 0.122 3.878 16 C 0.230 3.770 17 N -0.596 5.596 18 C -0.266 4.266 19 H 0.074 0.926 20 C 0.009 3.991 21 N -0.904 5.904 22 Si 0.909 3.091 23 H -0.281 1.281 24 H -0.288 1.288 25 H -0.282 1.282 26 C 0.128 3.872 27 C 0.113 3.887 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.408 0.592 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.176 0.824 41 H 0.057 0.943 42 H 0.110 0.890 43 H 0.260 0.740 44 H 0.036 0.964 45 H 0.085 0.915 46 H 0.080 0.920 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.903 11.997 0.588 13.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.096 4.096 3 C -0.199 4.199 4 C -0.202 4.202 5 C 0.229 3.771 6 O -0.288 6.288 7 C 0.256 3.744 8 O -0.389 6.389 9 N -0.344 5.344 10 C 0.084 3.916 11 C -0.305 4.305 12 C -0.129 4.129 13 N -0.137 5.137 14 N -0.138 5.138 15 C -0.010 4.010 16 C 0.103 3.897 17 N -0.319 5.319 18 C -0.394 4.394 19 H 0.091 0.909 20 C -0.190 4.190 21 N -0.547 5.547 22 Si 0.738 3.262 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.208 1.208 26 C 0.000 4.000 27 C -0.010 4.010 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.243 0.757 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.193 0.807 41 H 0.075 0.925 42 H 0.127 0.873 43 H 0.070 0.930 44 H 0.054 0.946 45 H 0.103 0.897 46 H 0.099 0.901 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.517 11.594 1.589 12.938 hybrid contribution 0.209 -0.525 -0.889 1.054 sum -5.308 11.070 0.699 12.296 Atomic orbital electron populations 1.21783 0.92405 1.02882 1.02264 1.20946 0.97174 0.97356 0.94149 1.21898 1.03367 0.92479 1.02206 1.21915 1.03518 0.99869 0.94874 1.25008 0.88934 0.76336 0.86786 1.90410 1.58722 1.35818 1.43875 1.20798 0.90566 0.80391 0.82630 1.90694 1.56889 1.47057 1.44296 1.46280 1.09556 1.55228 1.23346 1.19445 0.79205 0.99142 0.93831 1.19380 1.22345 0.92290 0.96500 1.23674 0.99785 0.98680 0.90761 1.77177 1.25140 0.89407 1.21938 1.48510 1.52974 1.05710 1.06595 1.22604 0.94311 0.96437 0.87598 1.19940 1.00091 0.78813 0.90867 1.44190 1.67487 1.11480 1.08698 1.19128 1.24880 1.06738 0.88658 0.90867 1.25034 0.97755 0.99145 0.97085 1.69934 1.33026 1.43257 1.08496 0.86265 0.80950 0.79914 0.79033 1.20686 1.21324 1.20798 1.21281 0.95894 0.96857 0.85965 1.22563 1.02792 0.77803 0.97859 0.92125 0.91599 0.91894 0.90027 0.91368 0.92708 0.92310 0.91393 0.89931 0.75651 0.90723 0.90237 0.80678 0.92549 0.87251 0.92982 0.94561 0.89660 0.90129 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 7.76 37.16 0.29 -1.03 16 2 C -0.09 -1.04 0.76 -155.66 -0.12 -1.16 16 3 C -0.14 -1.36 8.29 37.16 0.31 -1.05 16 4 C -0.14 -1.57 8.29 37.16 0.31 -1.27 16 5 C 0.36 4.90 6.03 -29.81 -0.18 4.72 16 6 O -0.42 -6.33 16.09 5.98 0.10 -6.23 16 7 C 0.47 7.08 7.55 -11.76 -0.09 6.99 16 8 O -0.51 -8.29 13.39 5.49 0.07 -8.22 16 9 N -0.69 -10.38 5.54 -62.04 -0.34 -10.73 16 10 C 0.21 3.21 5.95 -5.19 -0.03 3.18 16 11 C -0.29 -5.02 5.46 -105.21 -0.57 -5.59 16 12 C 0.06 0.93 11.97 -17.21 -0.21 0.73 16 13 N -0.32 -5.83 12.61 30.70 0.39 -5.44 16 14 N -0.36 -6.84 4.03 -56.93 -0.23 -7.07 16 15 C 0.12 2.42 6.71 -82.16 -0.55 1.87 16 16 C 0.23 5.16 5.11 -4.48 -0.02 5.14 16 17 N -0.60 -13.84 3.01 -172.97 -0.52 -14.36 16 18 C -0.27 -6.75 9.67 -15.06 -0.15 -6.90 16 19 H 0.07 1.80 7.88 -52.48 -0.41 1.39 16 20 C 0.01 0.24 5.00 -17.43 -0.09 0.15 16 21 N -0.90 -24.40 11.07 55.49 0.61 -23.79 16 22 Si 0.91 20.63 29.58 -169.99 -5.03 15.60 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 C 0.13 2.40 6.49 -3.59 -0.02 2.38 16 27 C 0.11 1.93 7.44 -3.88 -0.03 1.90 16 28 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.66 8.10 -51.93 -0.42 0.23 16 31 H 0.08 0.90 6.43 -51.93 -0.33 0.56 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 1.03 6.43 -51.93 -0.33 0.70 16 37 H 0.41 6.10 7.93 -40.82 -0.32 5.78 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.18 2.17 8.06 -52.49 -0.42 1.75 16 41 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 42 H 0.11 2.74 6.46 -51.93 -0.34 2.40 16 43 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 44 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.09 1.46 7.94 -51.93 -0.41 1.05 16 46 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 384.32 15.07 5.79 5.79 Total: -1.00 -29.39 384.32 -7.51 -36.90 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -7.20 Total: 7.50 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: -1.15 Total: 10.04 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: -0.09 Total: -61.39 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.17 Total: -14.45 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.39 -7.51 -36.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128268423.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.675 kcal (2) G-P(sol) polarization free energy of solvation -29.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds