Wall clock time and date at job start Tue Mar 31 2020 18:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47369 * 2 1 4 4 C 1.53002 * 109.46898 * 239.99962 * 2 1 3 5 5 C 1.50700 * 109.47171 * 120.00193 * 2 1 3 6 6 O 1.20781 * 119.99560 * 359.97438 * 5 2 1 7 7 C 1.49086 * 119.99958 * 179.97438 * 5 2 1 8 8 O 1.21362 * 119.99826 * 0.02562 * 7 5 2 9 9 N 1.34778 * 119.99683 * 179.97438 * 7 5 2 10 10 C 1.46504 * 119.99681 * 179.97438 * 9 7 5 11 11 C 1.50699 * 109.46853 * 179.97438 * 10 9 7 12 12 C 1.40073 * 126.12443 * 259.87822 * 11 10 9 13 13 N 1.31016 * 108.25278 * 179.83938 * 12 11 10 14 14 N 1.39746 * 108.17893 * 0.35712 * 13 12 11 15 15 C 1.34642 * 126.12213 * 80.00621 * 11 10 9 16 16 C 1.51042 * 127.91181 * 359.67789 * 15 11 10 17 17 N 1.47502 * 106.99911 * 169.72456 * 16 15 11 18 18 C 1.36935 * 121.00921 * 222.89840 * 17 16 15 19 19 H 1.08006 * 119.99822 * 155.91133 * 18 17 16 20 20 C 1.38810 * 120.00372 * 335.91985 * 18 17 16 21 21 N 1.31616 * 119.99791 * 344.46029 * 20 18 17 22 22 Si 1.86801 * 120.00237 * 164.46376 * 20 18 17 23 23 H 1.48504 * 109.47067 * 59.99674 * 22 20 18 24 24 H 1.48499 * 109.47175 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46938 * 299.99878 * 22 20 18 26 26 C 1.47087 * 117.97661 * 42.92530 * 17 16 15 27 27 C 1.46547 * 127.32582 * 179.45335 * 14 13 12 28 28 H 1.08998 * 109.46817 * 300.00240 * 1 2 3 29 29 H 1.09001 * 109.46828 * 59.99511 * 1 2 3 30 30 H 1.08994 * 109.47315 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47253 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.46857 * 300.00157 * 3 2 1 33 33 H 1.09001 * 109.47009 * 59.99696 * 3 2 1 34 34 H 1.08994 * 109.47101 * 300.00085 * 4 2 1 35 35 H 1.09006 * 109.47208 * 59.99917 * 4 2 1 36 36 H 1.08998 * 109.47012 * 180.02562 * 4 2 1 37 37 H 0.96992 * 120.00124 * 359.97438 * 9 7 5 38 38 H 1.08997 * 109.47040 * 60.00068 * 10 9 7 39 39 H 1.08995 * 109.46963 * 299.99998 * 10 9 7 40 40 H 1.07995 * 125.87459 * 0.03643 * 12 11 10 41 41 H 1.08997 * 109.94720 * 289.10011 * 16 15 11 42 42 H 1.08994 * 109.94586 * 50.35420 * 16 15 11 43 43 H 0.97001 * 120.00162 * 180.02562 * 21 20 18 44 44 H 1.08996 * 109.51638 * 56.33228 * 26 17 16 45 45 H 1.08993 * 109.51397 * 176.49306 * 26 17 16 46 46 H 1.09003 * 109.50738 * 41.61264 * 27 14 13 47 47 H 1.09005 * 109.50863 * 281.47866 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0324 -0.7104 1.2304 6 8 1.2475 -1.1691 2.0256 7 6 3.4982 -0.8472 1.4660 8 8 4.2868 -0.3859 0.6672 9 7 3.9474 -1.4821 2.5668 10 6 5.3877 -1.6169 2.7980 11 6 5.6219 -2.3600 4.0880 12 6 5.9478 -1.7867 5.3238 13 7 6.0680 -2.7497 6.2039 14 7 5.8310 -3.9649 5.5558 15 6 5.5578 -3.6940 4.2584 16 6 5.2363 -4.7473 3.2247 17 7 5.5352 -6.0563 3.8354 18 6 6.1821 -7.0338 3.1276 19 1 6.7326 -7.8033 3.6486 20 6 6.1306 -7.0358 1.7404 21 7 5.2322 -6.3056 1.1143 22 14 7.3361 -8.0748 0.7624 23 1 7.1693 -9.5040 1.1297 24 1 7.0735 -7.9033 -0.6891 25 1 8.7236 -7.6436 1.0692 26 6 5.1166 -6.2798 5.2277 27 6 5.8685 -5.3071 6.1427 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1393 36 1 3.1300 -0.7217 -1.2491 37 1 3.3171 -1.8497 3.2057 38 1 5.8396 -0.6271 2.8621 39 1 5.8380 -2.1692 1.9732 40 1 6.0747 -0.7320 5.5184 41 1 4.1814 -4.6946 2.9557 42 1 5.8547 -4.6003 2.3393 43 1 5.1959 -6.3072 0.1449 44 1 4.0439 -6.1086 5.3174 45 1 5.3480 -7.3048 5.5173 46 1 5.3934 -5.2889 7.1235 47 1 6.9044 -5.6307 6.2453 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128268423.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:57 Heat of formation + Delta-G solvation = 9.369459 kcal Electronic energy + Delta-G solvation = -29613.735707 eV Core-core repulsion = 25605.406925 eV Total energy + Delta-G solvation = -4008.328782 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.49382 -41.84521 -39.65038 -38.00503 -37.15123 -35.96116 -34.65136 -32.95402 -31.86259 -30.49417 -28.48582 -28.21521 -27.92448 -27.15640 -25.74850 -25.09401 -23.37322 -22.27590 -21.65862 -20.42597 -19.79450 -18.59991 -18.57051 -17.69102 -17.41366 -16.89239 -16.78047 -16.51074 -16.24968 -15.71392 -15.61290 -15.45690 -15.18656 -14.99076 -14.76742 -14.59056 -14.40462 -14.02293 -13.81932 -13.49839 -13.36818 -13.15663 -13.05206 -13.03267 -12.97714 -12.73114 -12.64689 -12.55300 -12.54510 -12.39244 -12.06262 -11.93749 -11.91837 -11.72835 -11.65259 -10.79499 -10.43568 -10.18823 -10.10232 -9.42643 -8.98193 -8.00338 -5.44704 -0.08255 0.87820 1.45300 1.46153 1.48698 1.54151 1.59183 1.93713 2.09116 2.43972 3.17121 3.19112 3.40090 3.54960 3.57071 3.78936 3.87505 3.90671 4.07279 4.15632 4.20704 4.30589 4.33988 4.42010 4.68843 4.69429 4.74708 4.75238 4.83482 4.86957 4.88443 4.94332 4.95481 4.97674 5.02617 5.15901 5.18699 5.22698 5.32062 5.35645 5.41422 5.56247 5.71457 5.80120 6.04925 6.18082 6.36196 6.76717 6.90776 6.96583 7.62854 8.14408 9.09090 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010443 B = 0.003828 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.676988 B = 7312.746673 C = 8988.946337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.094 4.094 3 C -0.138 4.138 4 C -0.143 4.143 5 C 0.362 3.638 6 O -0.437 6.437 7 C 0.470 3.530 8 O -0.525 6.525 9 N -0.692 5.692 10 C 0.212 3.788 11 C -0.280 4.280 12 C 0.069 3.931 13 N -0.326 5.326 14 N -0.367 5.367 15 C 0.096 3.904 16 C 0.249 3.751 17 N -0.615 5.615 18 C -0.272 4.272 19 H 0.080 0.920 20 C -0.041 4.041 21 N -0.932 5.932 22 Si 0.968 3.032 23 H -0.272 1.272 24 H -0.294 1.294 25 H -0.281 1.281 26 C 0.127 3.873 27 C 0.117 3.883 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.048 0.952 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.408 0.592 38 H 0.098 0.902 39 H 0.055 0.945 40 H 0.218 0.782 41 H 0.030 0.970 42 H 0.076 0.924 43 H 0.253 0.747 44 H 0.037 0.963 45 H 0.101 0.899 46 H 0.112 0.888 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.966 13.394 1.333 14.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.095 4.095 3 C -0.195 4.195 4 C -0.200 4.200 5 C 0.233 3.767 6 O -0.308 6.308 7 C 0.253 3.747 8 O -0.403 6.403 9 N -0.344 5.344 10 C 0.089 3.911 11 C -0.292 4.292 12 C -0.118 4.118 13 N -0.146 5.146 14 N -0.148 5.148 15 C -0.036 4.036 16 C 0.122 3.878 17 N -0.339 5.339 18 C -0.401 4.401 19 H 0.098 0.902 20 C -0.237 4.237 21 N -0.577 5.577 22 Si 0.795 3.205 23 H -0.197 1.197 24 H -0.221 1.221 25 H -0.207 1.207 26 C 0.000 4.000 27 C -0.005 4.005 28 H 0.079 0.921 29 H 0.110 0.890 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.114 0.886 36 H 0.081 0.919 37 H 0.244 0.756 38 H 0.116 0.884 39 H 0.074 0.926 40 H 0.234 0.766 41 H 0.048 0.952 42 H 0.094 0.906 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.119 0.881 46 H 0.130 0.870 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.579 12.980 2.370 14.325 hybrid contribution 0.225 -0.931 -1.072 1.437 sum -5.354 12.049 1.298 13.249 Atomic orbital electron populations 1.21786 0.91023 1.02578 1.03593 1.21054 0.98181 0.97868 0.92407 1.21884 1.02315 0.91487 1.03799 1.21909 1.02226 0.99799 0.96048 1.25327 0.87871 0.75998 0.87543 1.90404 1.58738 1.36772 1.44850 1.21181 0.91412 0.79948 0.82196 1.90686 1.57443 1.47617 1.44553 1.46255 1.09301 1.55250 1.23586 1.19376 0.79630 0.99751 0.92316 1.19557 1.20708 0.91465 0.97477 1.24288 0.97903 1.00168 0.89414 1.77167 1.25613 0.89419 1.22423 1.48700 1.53296 1.06568 1.06266 1.22248 0.96850 0.96742 0.87737 1.19350 0.97762 0.79907 0.90776 1.44430 1.67814 1.11386 1.10252 1.19487 1.24572 1.06897 0.89134 0.90215 1.25733 0.99240 1.00636 0.98077 1.70091 1.34630 1.44975 1.08031 0.85341 0.78951 0.78940 0.77226 1.19727 1.22063 1.20669 1.21438 0.96134 0.98472 0.83912 1.22539 1.02908 0.76699 0.98398 0.92083 0.88971 0.93043 0.91622 0.88909 0.92006 0.93285 0.88650 0.91895 0.75641 0.88352 0.92634 0.76574 0.95240 0.90632 0.93748 0.94505 0.88120 0.87031 0.90282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 7.76 71.98 0.56 -1.78 16 2 C -0.09 -1.96 0.76 -52.92 -0.04 -2.00 16 3 C -0.14 -2.38 8.29 71.98 0.60 -1.79 16 4 C -0.14 -3.01 8.29 71.98 0.60 -2.41 16 5 C 0.36 9.86 6.03 28.60 0.17 10.03 16 6 O -0.44 -13.30 16.09 -1.51 -0.02 -13.33 16 7 C 0.47 14.22 7.55 87.16 0.66 14.88 16 8 O -0.53 -17.20 13.39 -3.28 -0.04 -17.24 16 9 N -0.69 -21.06 5.54 -468.54 -2.60 -23.66 16 10 C 0.21 6.60 5.95 85.63 0.51 7.11 16 11 C -0.28 -9.41 5.46 -20.24 -0.11 -9.52 16 12 C 0.07 2.05 11.97 85.26 1.02 3.07 16 13 N -0.33 -11.30 12.61 -56.80 -0.72 -12.02 16 14 N -0.37 -13.67 4.03 -334.03 -1.35 -15.02 16 15 C 0.10 3.81 6.71 41.31 0.28 4.09 16 16 C 0.25 11.69 5.11 85.55 0.44 12.12 16 17 N -0.62 -29.13 3.01 -701.15 -2.11 -31.24 16 18 C -0.27 -14.00 9.67 84.03 0.81 -13.19 16 19 H 0.08 3.91 7.88 -2.91 -0.02 3.89 16 20 C -0.04 -2.15 5.00 84.86 0.42 -1.73 16 21 N -0.93 -52.43 11.07 21.65 0.24 -52.19 16 22 Si 0.97 43.11 29.58 68.60 2.03 45.14 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 24 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 25 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 26 C 0.13 4.71 6.49 86.35 0.56 5.27 16 27 C 0.12 3.81 7.44 86.46 0.64 4.45 16 28 H 0.06 1.08 8.10 -2.39 -0.02 1.06 16 29 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 31 H 0.06 1.37 6.43 -2.39 -0.02 1.36 16 32 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.06 1.59 6.43 -2.39 -0.02 1.57 16 37 H 0.41 12.44 7.93 -92.71 -0.74 11.71 16 38 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 39 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.22 4.47 8.06 -2.91 -0.02 4.45 16 41 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.08 4.02 6.46 -2.39 -0.02 4.01 16 43 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 44 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.10 3.35 7.94 -2.39 -0.02 3.33 16 46 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 47 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 Total: -1.00 -64.71 384.32 2.80 -61.91 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: 0.25 Total: 29.05 kcal Atomic # 6 Polarization: 21.48 SS G_CDS: 7.12 Total: 28.60 kcal Atomic # 7 Polarization: -127.59 SS G_CDS: -6.53 Total: -134.12 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -0.07 Total: -30.57 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -64.71 2.80 -61.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128268423.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.277 kcal (2) G-P(sol) polarization free energy of solvation -64.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds