Wall clock time and date at job start Tue Mar 31 2020 18:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47029 * 2 1 4 4 C 1.52999 * 109.47042 * 239.99644 * 2 1 3 5 5 O 1.45196 * 109.46578 * 119.99817 * 2 1 3 6 6 C 1.34547 * 117.00212 * 60.00422 * 5 2 1 7 7 O 1.21406 * 119.99943 * 359.97438 * 6 5 2 8 8 N 1.34783 * 120.00176 * 179.97438 * 6 5 2 9 9 C 1.36232 * 126.12293 * 180.30436 * 8 6 5 10 10 C 1.35076 * 107.56200 * 180.13639 * 9 8 6 11 11 C 1.50699 * 126.00627 * 179.84370 * 10 9 8 12 12 N 1.46902 * 109.47244 * 269.71912 * 11 10 9 13 13 C 1.46902 * 111.00147 * 190.00070 * 12 11 10 14 14 C 1.50704 * 109.46980 * 170.35765 * 13 12 11 15 15 H 1.08002 * 120.00162 * 354.92078 * 14 13 12 16 16 C 1.37874 * 119.99790 * 174.91733 * 14 13 12 17 17 N 1.31512 * 120.00364 * 359.97438 * 16 14 13 18 18 Si 1.86809 * 119.99844 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.46769 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46686 * 119.99892 * 18 16 14 21 21 H 1.48496 * 109.46995 * 239.99901 * 18 16 14 22 22 C 1.46900 * 111.00035 * 66.04467 * 12 11 10 23 23 C 1.52993 * 109.47274 * 61.77224 * 22 12 11 24 24 C 1.47199 * 109.47592 * 180.16442 * 23 22 12 25 25 N 8.19097 * 61.00923 * 159.55755 * 2 1 3 26 26 C 1.40176 * 107.98326 * 359.58194 * 10 9 8 27 27 N 1.30655 * 108.42722 * 0.26136 * 26 10 9 28 28 H 1.08996 * 109.47441 * 300.00566 * 1 2 3 29 29 H 1.09004 * 109.46729 * 60.00365 * 1 2 3 30 30 H 1.09007 * 109.47095 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47052 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47546 * 299.99829 * 3 2 1 33 33 H 1.09002 * 109.47160 * 59.99724 * 3 2 1 34 34 H 1.08997 * 109.47581 * 300.00269 * 4 2 1 35 35 H 1.08996 * 109.47173 * 60.00231 * 4 2 1 36 36 H 1.09000 * 109.46856 * 180.02562 * 4 2 1 37 37 H 1.07997 * 126.21430 * 359.97438 * 9 8 6 38 38 H 1.08997 * 109.47526 * 149.71910 * 11 10 9 39 39 H 1.08997 * 109.47414 * 29.71621 * 11 10 9 40 40 H 1.09000 * 109.47205 * 290.35417 * 13 12 11 41 41 H 1.08993 * 109.47132 * 50.35886 * 13 12 11 42 42 H 0.96999 * 120.00593 * 180.02562 * 17 16 14 43 43 H 1.08999 * 109.47180 * 301.77171 * 22 12 11 44 44 H 1.09002 * 109.47236 * 181.77503 * 22 12 11 45 45 H 1.08995 * 109.47487 * 300.16730 * 23 22 12 46 46 H 1.09001 * 109.47258 * 60.16514 * 23 22 12 47 47 H 1.08010 * 125.78943 * 180.23567 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6844 1.1856 6 6 1.6524 -1.9714 1.3383 7 8 0.9518 -2.5081 0.5046 8 7 2.0681 -2.6648 2.4167 9 6 1.7833 -3.9682 2.6922 10 6 2.3838 -4.2783 3.8617 11 6 2.3360 -5.6155 4.5549 12 7 1.1898 -5.6505 5.4731 13 6 1.2435 -6.8372 6.3373 14 6 0.1966 -6.7214 7.4152 15 1 -0.3887 -5.8182 7.5047 16 6 -0.0139 -7.7685 8.2870 17 7 0.6985 -8.8686 8.1777 18 14 -1.3121 -7.6253 9.6226 19 1 -1.9713 -6.2978 9.5317 20 1 -2.3268 -8.6947 9.4432 21 1 -0.6705 -7.7699 10.9540 22 6 -0.0785 -5.5944 4.7341 23 6 -0.1910 -6.8165 3.8205 24 6 -1.4602 -6.7583 3.0771 25 7 -2.4398 -6.7134 2.5024 26 6 3.0642 -3.1393 4.3141 27 7 2.8760 -2.1760 3.4517 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6767 -1.7490 -1.2492 35 1 1.6768 -0.2076 -2.1392 36 1 3.1300 -0.7217 -1.2489 37 1 1.1838 -4.6321 2.0869 38 1 3.2571 -5.7662 5.1178 39 1 2.2307 -6.4063 3.8122 40 1 1.0540 -7.7298 5.7411 41 1 2.2300 -6.9088 6.7952 42 1 0.5501 -9.6055 8.7908 43 1 -0.1082 -4.6865 4.1317 44 1 -0.9099 -5.5900 5.4390 45 1 0.6419 -6.8225 3.1175 46 1 -0.1643 -7.7243 4.4232 47 1 3.6453 -3.0697 5.2219 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142801457.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:34 Heat of formation + Delta-G solvation = 37.523193 kcal Electronic energy + Delta-G solvation = -28901.703946 eV Core-core repulsion = 24894.596002 eV Total energy + Delta-G solvation = -4007.107944 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.14781 -40.64343 -37.93268 -37.35337 -35.95203 -34.57853 -32.97058 -32.50204 -31.15869 -30.20280 -27.78489 -27.75610 -27.41158 -25.69589 -24.22048 -23.28376 -22.01782 -20.71985 -20.11369 -19.53869 -18.24449 -17.46598 -17.00959 -16.95842 -16.30747 -15.80395 -15.40536 -14.98787 -14.74047 -14.58341 -14.39758 -14.12727 -14.02377 -13.71037 -13.64157 -13.15712 -13.03573 -12.86078 -12.54733 -12.36546 -12.32081 -12.29574 -12.05378 -12.00473 -11.85569 -11.84298 -11.55716 -11.32964 -11.18513 -10.90227 -10.80302 -10.75730 -10.69109 -10.58525 -10.27870 -10.01918 -9.90980 -9.33865 -8.86092 -8.51615 -7.44074 -6.11833 -4.13183 0.88669 1.44114 2.62607 2.66508 3.07230 3.10290 3.12090 3.27375 3.36311 3.40507 4.28922 4.29806 4.36319 4.38462 4.48438 4.51687 4.69898 4.97921 5.10902 5.13383 5.17403 5.18057 5.24979 5.29463 5.33124 5.39200 5.42012 5.46643 5.50893 5.63916 5.67574 5.73555 5.88456 5.91913 5.95247 6.00217 6.09717 6.23547 6.36452 6.57544 6.67442 7.09256 7.15134 7.17622 7.69099 7.76798 7.83211 7.93787 8.01577 8.38314 8.95267 9.52480 10.98330 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017163 B = 0.002651 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.054315 B =10557.852128 C =11188.626464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.128 3.872 3 C -0.139 4.139 4 C -0.186 4.186 5 O -0.330 6.330 6 C 0.692 3.308 7 O -0.523 6.523 8 N -0.360 5.360 9 C 0.076 3.924 10 C -0.176 4.176 11 C 0.114 3.886 12 N -0.522 5.522 13 C 0.186 3.814 14 C -0.509 4.509 15 H 0.065 0.935 16 C 0.059 3.941 17 N -0.896 5.896 18 Si 0.893 3.107 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.071 3.929 23 C -0.075 4.075 24 C 0.222 3.778 25 N -0.458 5.458 26 C 0.106 3.894 27 N -0.273 5.273 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.184 0.816 38 H 0.090 0.910 39 H 0.044 0.956 40 H 0.006 0.994 41 H 0.033 0.967 42 H 0.261 0.739 43 H 0.061 0.939 44 H 0.093 0.907 45 H 0.098 0.902 46 H 0.125 0.875 47 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.799 14.640 -15.087 22.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.092 3.908 3 C -0.197 4.197 4 C -0.243 4.243 5 O -0.244 6.244 6 C 0.449 3.551 7 O -0.407 6.407 8 N -0.163 5.163 9 C -0.059 4.059 10 C -0.185 4.185 11 C -0.015 4.015 12 N -0.245 5.245 13 C 0.062 3.938 14 C -0.548 4.548 15 H 0.083 0.917 16 C -0.143 4.143 17 N -0.536 5.536 18 Si 0.721 3.279 19 H -0.196 1.196 20 H -0.212 1.212 21 H -0.210 1.210 22 C -0.060 4.060 23 C -0.117 4.117 24 C -0.096 4.096 25 N -0.136 5.136 26 C -0.087 4.087 27 N -0.090 5.090 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.201 0.799 38 H 0.108 0.892 39 H 0.062 0.938 40 H 0.024 0.976 41 H 0.051 0.949 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.112 0.888 45 H 0.116 0.884 46 H 0.142 0.858 47 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 5.317 16.120 -16.347 23.566 hybrid contribution -0.606 -1.654 0.669 1.884 sum 4.712 14.467 -15.677 21.846 Atomic orbital electron populations 1.22552 0.93571 1.05127 1.03132 1.22330 0.94727 0.92030 0.81720 1.21853 1.02514 0.91877 1.03412 1.22540 1.01910 1.03281 0.96532 1.86472 1.69947 1.21764 1.46216 1.17308 0.77241 0.81199 0.79328 1.90985 1.38270 1.70695 1.40783 1.45764 1.42250 1.09775 1.18501 1.22675 1.00604 0.84368 0.98204 1.20552 1.03427 0.98970 0.95566 1.20558 0.96839 0.89484 0.94585 1.62404 0.99105 1.44725 1.18263 1.19888 0.98297 0.84691 0.90962 1.21158 1.19221 1.00940 1.13462 0.91698 1.24938 0.96354 0.95247 0.97762 1.69935 1.40403 1.05176 1.38050 0.86515 0.81488 0.78137 0.81769 1.19638 1.21173 1.21010 1.22067 0.95407 0.93414 0.95095 1.20257 0.87414 1.05861 0.98154 1.29304 0.94826 0.92526 0.92945 1.81180 1.11916 1.09664 1.10866 1.24423 0.96581 0.89690 0.97961 1.77640 1.11330 1.22421 0.97625 0.91676 0.90564 0.89587 0.91178 0.89828 0.91123 0.89626 0.90560 0.91774 0.79921 0.89202 0.93808 0.97633 0.94885 0.92891 0.92098 0.88830 0.88390 0.85771 0.78238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.75 8.37 37.16 0.31 -1.44 16 2 C 0.13 1.23 1.13 -90.62 -0.10 1.13 16 3 C -0.14 -0.96 8.85 37.15 0.33 -0.63 16 4 C -0.19 -1.63 8.37 37.16 0.31 -1.31 16 5 O -0.33 -4.24 9.76 -40.08 -0.39 -4.63 16 6 C 0.69 9.73 8.00 54.06 0.43 10.16 16 7 O -0.52 -7.67 12.16 -19.20 -0.23 -7.90 16 8 N -0.36 -5.08 3.64 -16.57 -0.06 -5.14 16 9 C 0.08 0.97 9.55 -16.72 -0.16 0.81 16 10 C -0.18 -2.20 4.98 -105.02 -0.52 -2.72 16 11 C 0.11 1.50 5.23 -4.98 -0.03 1.48 16 12 N -0.52 -8.81 4.70 -237.52 -1.12 -9.92 16 13 C 0.19 3.94 4.51 -4.97 -0.02 3.92 16 14 C -0.51 -12.56 8.37 -34.44 -0.29 -12.85 16 15 H 0.06 1.63 7.29 -52.49 -0.38 1.24 16 16 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 17 N -0.90 -24.26 13.29 55.43 0.74 -23.53 16 18 Si 0.89 20.42 29.54 -169.99 -5.02 15.40 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C 0.07 1.12 4.85 -3.83 -0.02 1.10 16 23 C -0.08 -1.06 5.04 -29.52 -0.15 -1.20 16 24 C 0.22 3.53 15.44 -20.74 -0.32 3.21 16 25 N -0.46 -8.34 18.54 42.18 0.78 -7.56 16 26 C 0.11 1.29 11.95 -17.33 -0.21 1.08 16 27 N -0.27 -3.82 12.35 30.66 0.38 -3.44 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.09 1.00 5.88 -51.93 -0.31 0.70 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.93 5.88 -51.93 -0.31 0.63 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.18 2.10 8.05 -52.49 -0.42 1.68 16 38 H 0.09 1.13 7.94 -51.93 -0.41 0.72 16 39 H 0.04 0.52 6.05 -51.93 -0.31 0.20 16 40 H 0.01 0.13 6.09 -51.93 -0.32 -0.19 16 41 H 0.03 0.75 7.94 -51.93 -0.41 0.34 16 42 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 43 H 0.06 0.90 6.23 -51.93 -0.32 0.58 16 44 H 0.09 1.70 6.88 -51.93 -0.36 1.35 16 45 H 0.10 1.11 6.31 -51.93 -0.33 0.78 16 46 H 0.12 1.95 6.34 -51.93 -0.33 1.62 16 47 H 0.20 1.85 8.06 -52.48 -0.42 1.43 16 LS Contribution 389.66 15.07 5.87 5.87 Total: -1.00 -30.34 389.66 -6.31 -36.65 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -6.73 Total: 0.06 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -0.53 Total: 4.15 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: 0.72 Total: -49.59 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -0.62 Total: -12.54 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.34 -6.31 -36.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142801457.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.170 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds