Wall clock time and date at job start Tue Mar 31 2020 19:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47316 * 2 1 4 4 H 1.09003 * 109.47219 * 305.00534 * 3 2 1 5 5 C 1.50699 * 109.47233 * 185.00421 * 3 2 1 6 6 H 1.08001 * 119.99965 * 240.00581 * 5 3 2 7 7 C 1.37877 * 120.00275 * 60.00254 * 5 3 2 8 8 N 1.31514 * 119.99737 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00265 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.46879 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.46972 * 119.99691 * 9 7 5 12 12 H 1.48496 * 109.47211 * 240.00084 * 9 7 5 13 13 N 1.46499 * 109.46996 * 65.00586 * 3 2 1 14 14 N 1.28542 * 124.88281 * 59.69725 * 13 3 2 15 15 C 1.31931 * 110.05440 * 179.83519 * 14 13 3 16 16 C 1.47711 * 126.57014 * 180.17309 * 15 14 13 17 17 O 1.21564 * 120.00029 * 186.56785 * 16 15 14 18 18 N 1.34776 * 119.99815 * 6.56467 * 16 15 14 19 19 C 1.47152 * 120.98154 * 6.35521 * 18 16 15 20 20 C 1.53708 * 108.16242 * 129.43340 * 19 18 16 21 21 O 1.42957 * 109.15095 * 52.53694 * 20 19 18 22 22 C 1.42963 * 114.16539 * 297.28986 * 21 20 19 23 23 C 1.47155 * 120.98354 * 186.63547 * 18 16 15 24 24 C 1.41085 * 106.86619 * 0.42970 * 15 14 13 25 25 C 1.34955 * 124.88034 * 240.00067 * 13 3 2 26 26 C 1.51062 * 144.33103 * 359.97438 * 25 13 3 27 27 N 1.48146 * 105.62351 * 162.78951 * 26 25 13 28 28 C 1.48191 * 103.39907 * 26.83689 * 27 26 25 29 29 H 1.08992 * 109.47191 * 59.99578 * 1 2 3 30 30 H 1.09005 * 109.47366 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46915 * 299.99528 * 1 2 3 32 32 H 1.09001 * 109.46503 * 240.00138 * 2 1 3 33 33 H 1.09001 * 109.47341 * 120.00552 * 2 1 3 34 34 H 0.97001 * 120.00092 * 180.02562 * 8 7 5 35 35 H 1.09007 * 109.67776 * 249.20917 * 19 18 16 36 36 H 1.09001 * 109.68491 * 9.75723 * 19 18 16 37 37 H 1.09001 * 109.65441 * 292.56454 * 20 19 18 38 38 H 1.09002 * 109.48634 * 172.39661 * 20 19 18 39 39 H 1.09005 * 109.51133 * 302.66089 * 22 21 20 40 40 H 1.08997 * 109.55705 * 182.53403 * 22 21 20 41 41 H 1.09004 * 109.67607 * 350.23374 * 23 18 16 42 42 H 1.08996 * 109.67895 * 110.75116 * 23 18 16 43 43 H 1.09003 * 110.21165 * 281.81069 * 26 25 13 44 44 H 1.08999 * 110.21857 * 43.73483 * 26 25 13 45 45 H 1.00900 * 111.00604 * 145.92285 * 27 26 25 46 46 H 1.08998 * 110.22992 * 214.18918 * 28 27 26 47 47 H 1.08998 * 110.23060 * 92.22022 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1473 1.8886 0.6522 7 6 4.1433 0.8784 -1.2281 8 7 3.4061 0.3366 -2.1730 9 14 6.0050 0.8799 -1.3814 10 1 6.5988 1.5451 -0.1938 11 1 6.4961 -0.5191 -1.4630 12 1 6.3999 1.6157 -2.6093 13 7 1.6526 2.0973 1.2519 14 7 1.9983 1.7029 2.4254 15 6 1.4910 2.5066 3.3405 16 6 1.6616 2.3936 4.8033 17 8 1.0430 3.1306 5.5462 18 7 2.5030 1.4731 5.3144 19 6 3.3650 0.6650 4.4374 20 6 4.8046 0.7507 4.9693 21 8 4.8128 0.4082 6.3572 22 6 4.0564 1.2962 7.1837 23 6 2.5825 1.2423 6.7656 24 6 0.7493 3.4914 2.6545 25 6 0.8767 3.1981 1.3390 26 6 0.1024 4.2201 0.5404 27 7 -0.8165 4.8677 1.5053 28 6 -0.1139 4.7186 2.8016 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.8292 -0.0618 -2.9497 35 1 3.0285 -0.3718 4.4461 36 1 3.3241 1.0561 3.4207 37 1 5.1826 1.7651 4.8423 38 1 5.4377 0.0547 4.4189 39 1 4.4316 2.3127 7.0647 40 1 4.1503 0.9932 8.2264 41 1 2.0232 2.0162 7.2915 42 1 2.1680 0.2631 7.0047 43 1 0.7817 4.9582 0.1139 44 1 -0.4657 3.7291 -0.2497 45 1 -0.9526 5.8412 1.2776 46 1 -0.8348 4.5782 3.6070 47 1 0.5056 5.5938 2.9973 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255170440.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:20 Heat of formation + Delta-G solvation = 35.254739 kcal Electronic energy + Delta-G solvation = -30632.598377 eV Core-core repulsion = 26625.392065 eV Total energy + Delta-G solvation = -4007.206312 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.40754 -39.87263 -37.96309 -37.34603 -35.24721 -34.52891 -32.27053 -31.53060 -30.59659 -29.46885 -27.98425 -27.90650 -26.78562 -24.47867 -23.80318 -23.22363 -22.35801 -21.38007 -19.92618 -19.65825 -18.74285 -17.08519 -16.86919 -16.44508 -16.03540 -15.88716 -15.49861 -15.24263 -14.97636 -14.84067 -14.50631 -14.39119 -13.97822 -13.85878 -13.60454 -13.13164 -13.10013 -12.69158 -12.64792 -12.31016 -12.15310 -11.83151 -11.69019 -11.63818 -11.46765 -11.33393 -11.10344 -10.98523 -10.84485 -10.44690 -10.35423 -10.19763 -10.04614 -9.96378 -9.68051 -9.52374 -9.02926 -8.77334 -8.50918 -8.26198 -7.88260 -6.42862 -4.52869 2.04992 2.58073 2.94820 3.08873 3.17379 3.19137 3.26472 3.75747 3.85202 4.13321 4.35779 4.50547 4.77176 4.86829 4.90777 4.96883 5.02262 5.17039 5.27386 5.36580 5.50615 5.55974 5.61046 5.67365 5.71658 5.76518 5.83866 5.93390 5.97632 6.00782 6.10863 6.17798 6.23251 6.39564 6.52122 6.59606 6.61721 6.66541 6.75095 6.90515 7.09095 7.14655 7.29456 7.40245 7.46064 7.52323 7.69523 7.79090 8.32110 8.49653 8.74034 9.14893 10.62262 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008658 B = 0.005541 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3233.291642 B = 5051.731543 C = 7263.654251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.067 0.933 5 C -0.531 4.531 6 H 0.068 0.932 7 C 0.071 3.929 8 N -0.884 5.884 9 Si 0.907 3.093 10 H -0.271 1.271 11 H -0.279 1.279 12 H -0.281 1.281 13 N -0.200 5.200 14 N -0.230 5.230 15 C -0.026 4.026 16 C 0.615 3.385 17 O -0.543 6.543 18 N -0.609 5.609 19 C 0.054 3.946 20 C 0.048 3.952 21 O -0.384 6.384 22 C 0.050 3.950 23 C 0.078 3.922 24 C -0.187 4.187 25 C -0.026 4.026 26 C 0.127 3.873 27 N -0.653 5.653 28 C 0.121 3.879 29 H 0.047 0.953 30 H 0.043 0.957 31 H 0.036 0.964 32 H 0.114 0.886 33 H 0.052 0.948 34 H 0.269 0.731 35 H 0.074 0.926 36 H 0.145 0.855 37 H 0.054 0.946 38 H 0.107 0.893 39 H 0.054 0.946 40 H 0.103 0.897 41 H 0.099 0.901 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.091 0.909 45 H 0.345 0.655 46 H 0.088 0.912 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.934 3.436 8.672 9.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.167 4.167 3 C 0.172 3.828 4 H 0.085 0.915 5 C -0.569 4.569 6 H 0.087 0.913 7 C -0.133 4.133 8 N -0.521 5.521 9 Si 0.733 3.267 10 H -0.195 1.195 11 H -0.205 1.205 12 H -0.207 1.207 13 N 0.013 4.987 14 N -0.068 5.068 15 C -0.180 4.180 16 C 0.403 3.597 17 O -0.419 6.419 18 N -0.343 5.343 19 C -0.069 4.069 20 C -0.029 4.029 21 O -0.303 6.303 22 C -0.028 4.028 23 C -0.044 4.044 24 C -0.199 4.199 25 C -0.154 4.154 26 C -0.004 4.004 27 N -0.282 5.282 28 C -0.008 4.008 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.132 0.868 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.162 0.838 37 H 0.072 0.928 38 H 0.125 0.875 39 H 0.072 0.928 40 H 0.121 0.879 41 H 0.118 0.882 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.109 0.891 45 H 0.160 0.840 46 H 0.106 0.894 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.977 2.016 8.779 9.222 hybrid contribution 1.184 1.282 -0.364 1.782 sum -0.793 3.298 8.415 9.073 Atomic orbital electron populations 1.21846 0.98402 1.00242 1.00307 1.21941 0.92516 0.97797 1.04423 1.19806 0.97011 0.90849 0.75173 0.91548 1.21157 0.89104 1.39986 1.06695 0.91333 1.24858 0.99291 0.94172 0.94959 1.69837 1.35579 1.37206 1.09476 0.86285 0.83873 0.78157 0.78344 1.19499 1.20457 1.20667 1.46043 1.29487 1.16382 1.06762 1.73465 1.20258 1.23104 0.90014 1.20756 1.06523 0.97980 0.92787 1.17056 0.78201 0.78950 0.85447 1.90709 1.48212 1.43320 1.59706 1.47907 1.40941 1.38555 1.06893 1.23248 0.88973 0.96680 0.97983 1.23129 0.96695 1.01360 0.81723 1.87926 1.71477 1.52637 1.18239 1.22935 0.90295 0.94329 0.95253 1.22255 0.97801 1.02935 0.81451 1.20634 1.05615 1.00756 0.92878 1.21789 1.01663 0.94696 0.97285 1.20708 0.92594 0.92960 0.94119 1.63778 1.42400 1.20108 1.01939 1.20575 0.94495 0.93016 0.92754 0.93403 0.93825 0.94494 0.86768 0.92876 0.92094 0.90814 0.83806 0.92806 0.87472 0.92800 0.87943 0.88226 0.90813 0.91988 0.89130 0.83988 0.89363 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.80 37.16 0.36 -2.48 16 2 C -0.13 -2.75 5.32 -26.73 -0.14 -2.89 16 3 C 0.27 6.00 2.37 -69.09 -0.16 5.84 16 4 H 0.07 1.55 8.04 -51.93 -0.42 1.13 16 5 C -0.53 -12.93 8.68 -34.44 -0.30 -13.23 16 6 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 7 C 0.07 1.73 5.29 -17.82 -0.09 1.63 16 8 N -0.88 -21.96 11.29 55.43 0.63 -21.33 16 9 Si 0.91 19.30 29.54 -169.99 -5.02 14.28 16 10 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 11 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 12 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 13 N -0.20 -4.18 2.48 -51.67 -0.13 -4.31 16 14 N -0.23 -4.74 8.07 33.36 0.27 -4.47 16 15 C -0.03 -0.51 6.82 -82.88 -0.57 -1.08 16 16 C 0.61 11.67 7.70 -12.39 -0.10 11.58 16 17 O -0.54 -11.03 16.40 5.31 0.09 -10.95 16 18 N -0.61 -9.92 3.01 -173.18 -0.52 -10.44 16 19 C 0.05 0.86 6.29 -3.32 -0.02 0.84 16 20 C 0.05 0.67 7.00 37.53 0.26 0.94 16 21 O -0.38 -5.32 10.74 -35.23 -0.38 -5.69 16 22 C 0.05 0.58 6.98 37.31 0.26 0.84 16 23 C 0.08 1.03 6.65 -3.53 -0.02 1.01 16 24 C -0.19 -3.58 6.96 -104.54 -0.73 -4.31 16 25 C -0.03 -0.49 7.63 -82.06 -0.63 -1.12 16 26 C 0.13 1.94 7.46 -4.11 -0.03 1.91 16 27 N -0.65 -9.00 7.76 -114.15 -0.89 -9.89 16 28 C 0.12 1.89 7.46 -4.24 -0.03 1.86 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.04 0.72 7.75 -51.93 -0.40 0.31 16 32 H 0.11 2.67 5.95 -51.93 -0.31 2.36 16 33 H 0.05 1.16 8.04 -51.93 -0.42 0.74 16 34 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 35 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 36 H 0.15 2.63 4.36 -56.83 -0.25 2.39 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.11 1.35 8.14 -51.93 -0.42 0.92 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.10 1.31 7.06 -51.93 -0.37 0.94 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.34 3.58 8.92 -39.29 -0.35 3.23 16 46 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 47 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 377.00 15.07 5.68 5.68 Total: -1.00 -27.94 377.00 -9.33 -37.27 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -7.13 Total: 8.52 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -1.93 Total: 1.33 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: -0.64 Total: -50.45 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.29 Total: -16.64 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -27.94 -9.33 -37.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255170440.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.527 kcal (2) G-P(sol) polarization free energy of solvation -27.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds