Wall clock time and date at job start Tue Mar 31 2020 19:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47316 * 2 1 4 4 H 1.09003 * 109.47219 * 305.00534 * 3 2 1 5 5 C 1.50699 * 109.47233 * 185.00421 * 3 2 1 6 6 H 1.08001 * 119.99965 * 240.00581 * 5 3 2 7 7 C 1.37877 * 120.00275 * 60.00254 * 5 3 2 8 8 N 1.31514 * 119.99737 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00265 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.46879 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.46972 * 119.99691 * 9 7 5 12 12 H 1.48496 * 109.47211 * 240.00084 * 9 7 5 13 13 N 1.46499 * 109.46996 * 65.00586 * 3 2 1 14 14 N 1.28542 * 124.88281 * 59.69725 * 13 3 2 15 15 C 1.31931 * 110.05440 * 179.83519 * 14 13 3 16 16 C 1.47711 * 126.57014 * 180.17309 * 15 14 13 17 17 O 1.21564 * 120.00029 * 186.56785 * 16 15 14 18 18 N 1.34776 * 119.99815 * 6.56467 * 16 15 14 19 19 C 1.47152 * 120.98154 * 6.35521 * 18 16 15 20 20 C 1.53708 * 108.16242 * 129.43340 * 19 18 16 21 21 O 1.42957 * 109.15095 * 52.53694 * 20 19 18 22 22 C 1.42963 * 114.16539 * 297.28986 * 21 20 19 23 23 C 1.47155 * 120.98354 * 186.63547 * 18 16 15 24 24 C 1.41085 * 106.86619 * 0.42970 * 15 14 13 25 25 C 1.34955 * 124.88034 * 240.00067 * 13 3 2 26 26 C 1.51062 * 144.33103 * 359.97438 * 25 13 3 27 27 N 1.48146 * 105.62351 * 162.78951 * 26 25 13 28 28 C 1.48191 * 103.39907 * 26.83689 * 27 26 25 29 29 H 1.08992 * 109.47191 * 59.99578 * 1 2 3 30 30 H 1.09005 * 109.47366 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46915 * 299.99528 * 1 2 3 32 32 H 1.09001 * 109.46503 * 240.00138 * 2 1 3 33 33 H 1.09001 * 109.47341 * 120.00552 * 2 1 3 34 34 H 0.97001 * 120.00092 * 180.02562 * 8 7 5 35 35 H 1.09007 * 109.67776 * 249.20917 * 19 18 16 36 36 H 1.09001 * 109.68491 * 9.75723 * 19 18 16 37 37 H 1.09001 * 109.65441 * 292.56454 * 20 19 18 38 38 H 1.09002 * 109.48634 * 172.39661 * 20 19 18 39 39 H 1.09005 * 109.51133 * 302.66089 * 22 21 20 40 40 H 1.08997 * 109.55705 * 182.53403 * 22 21 20 41 41 H 1.09004 * 109.67607 * 350.23374 * 23 18 16 42 42 H 1.08996 * 109.67895 * 110.75116 * 23 18 16 43 43 H 1.09003 * 110.21165 * 281.81069 * 26 25 13 44 44 H 1.08999 * 110.21857 * 43.73483 * 26 25 13 45 45 H 1.00900 * 111.00604 * 145.92285 * 27 26 25 46 46 H 1.08998 * 110.22992 * 214.18918 * 28 27 26 47 47 H 1.08998 * 110.23060 * 92.22022 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1473 1.8886 0.6522 7 6 4.1433 0.8784 -1.2281 8 7 3.4061 0.3366 -2.1730 9 14 6.0050 0.8799 -1.3814 10 1 6.5988 1.5451 -0.1938 11 1 6.4961 -0.5191 -1.4630 12 1 6.3999 1.6157 -2.6093 13 7 1.6526 2.0973 1.2519 14 7 1.9983 1.7029 2.4254 15 6 1.4910 2.5066 3.3405 16 6 1.6616 2.3936 4.8033 17 8 1.0430 3.1306 5.5462 18 7 2.5030 1.4731 5.3144 19 6 3.3650 0.6650 4.4374 20 6 4.8046 0.7507 4.9693 21 8 4.8128 0.4082 6.3572 22 6 4.0564 1.2962 7.1837 23 6 2.5825 1.2423 6.7656 24 6 0.7493 3.4914 2.6545 25 6 0.8767 3.1981 1.3390 26 6 0.1024 4.2201 0.5404 27 7 -0.8165 4.8677 1.5053 28 6 -0.1139 4.7186 2.8016 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.8292 -0.0618 -2.9497 35 1 3.0285 -0.3718 4.4461 36 1 3.3241 1.0561 3.4207 37 1 5.1826 1.7651 4.8423 38 1 5.4377 0.0547 4.4189 39 1 4.4316 2.3127 7.0647 40 1 4.1503 0.9932 8.2264 41 1 2.0232 2.0162 7.2915 42 1 2.1680 0.2631 7.0047 43 1 0.7817 4.9582 0.1139 44 1 -0.4657 3.7291 -0.2497 45 1 -0.9526 5.8412 1.2776 46 1 -0.8348 4.5782 3.6070 47 1 0.5056 5.5938 2.9973 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255170440.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:19 Heat of formation + Delta-G solvation = 16.843576 kcal Electronic energy + Delta-G solvation = -30633.396745 eV Core-core repulsion = 26625.392065 eV Total energy + Delta-G solvation = -4008.004680 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.89816 -41.15169 -39.24696 -38.65119 -36.93271 -35.82207 -34.02899 -32.80356 -32.01337 -30.84107 -29.47237 -29.20851 -28.23008 -25.96340 -25.06536 -24.74014 -23.67695 -22.75455 -21.37807 -21.19380 -20.09369 -18.75473 -18.24934 -17.82152 -17.36539 -17.31361 -16.87359 -16.50857 -16.27731 -16.07911 -15.96548 -15.76817 -15.33144 -15.17578 -14.98883 -14.71937 -14.49291 -14.18195 -13.91718 -13.80885 -13.43883 -13.38748 -13.14477 -12.93838 -12.88706 -12.77149 -12.67119 -12.39327 -12.20229 -12.05881 -11.95059 -11.77089 -11.48230 -11.37196 -11.30509 -10.98411 -10.62139 -10.31863 -9.98593 -9.62153 -9.20741 -8.29041 -6.44694 0.54698 1.10636 1.38620 1.43020 1.49751 1.57118 1.83922 2.27253 2.36114 2.82320 2.99323 3.12641 3.19353 3.46140 3.65305 3.72545 3.94557 4.04636 4.11434 4.22440 4.29009 4.35181 4.36587 4.38487 4.46634 4.48337 4.53048 4.58661 4.65681 4.77800 4.78447 4.83521 4.86348 4.94476 5.00860 5.06759 5.12523 5.29138 5.36686 5.40055 5.51362 5.61084 5.64870 5.93324 6.03972 6.09616 6.13884 6.37397 6.59295 6.88447 7.19249 7.26314 8.75329 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008658 B = 0.005541 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3233.291642 B = 5051.731543 C = 7263.654251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C 0.277 3.723 4 H 0.054 0.946 5 C -0.544 4.544 6 H 0.052 0.948 7 C 0.037 3.963 8 N -0.902 5.902 9 Si 0.959 3.041 10 H -0.274 1.274 11 H -0.275 1.275 12 H -0.277 1.277 13 N -0.215 5.215 14 N -0.243 5.243 15 C -0.039 4.039 16 C 0.609 3.391 17 O -0.563 6.563 18 N -0.605 5.605 19 C 0.055 3.945 20 C 0.055 3.945 21 O -0.390 6.390 22 C 0.051 3.949 23 C 0.074 3.926 24 C -0.204 4.204 25 C -0.038 4.038 26 C 0.129 3.871 27 N -0.646 5.646 28 C 0.127 3.873 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.027 0.973 32 H 0.096 0.904 33 H 0.040 0.960 34 H 0.272 0.728 35 H 0.076 0.924 36 H 0.121 0.879 37 H 0.050 0.950 38 H 0.120 0.880 39 H 0.053 0.947 40 H 0.138 0.862 41 H 0.100 0.900 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.097 0.903 45 H 0.366 0.634 46 H 0.086 0.914 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.787 3.810 9.331 10.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.158 4.158 3 C 0.179 3.821 4 H 0.072 0.928 5 C -0.582 4.582 6 H 0.071 0.929 7 C -0.165 4.165 8 N -0.539 5.539 9 Si 0.785 3.215 10 H -0.198 1.198 11 H -0.200 1.200 12 H -0.202 1.202 13 N -0.002 5.002 14 N -0.081 5.081 15 C -0.195 4.195 16 C 0.398 3.602 17 O -0.441 6.441 18 N -0.338 5.338 19 C -0.068 4.068 20 C -0.023 4.023 21 O -0.309 6.309 22 C -0.026 4.026 23 C -0.047 4.047 24 C -0.216 4.216 25 C -0.166 4.166 26 C -0.001 4.001 27 N -0.278 5.278 28 C -0.003 4.003 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.046 0.954 32 H 0.114 0.886 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.139 0.861 37 H 0.069 0.931 38 H 0.138 0.862 39 H 0.071 0.929 40 H 0.156 0.844 41 H 0.118 0.882 42 H 0.105 0.895 43 H 0.097 0.903 44 H 0.115 0.885 45 H 0.185 0.815 46 H 0.104 0.896 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.826 2.390 9.446 9.914 hybrid contribution 1.124 1.168 -0.509 1.699 sum -0.703 3.558 8.938 9.646 Atomic orbital electron populations 1.21710 0.96320 1.01379 1.00108 1.21762 0.94267 0.96989 1.02769 1.19513 0.95874 0.91140 0.75609 0.92787 1.21244 0.90262 1.40201 1.06477 0.92946 1.25446 1.02581 0.93831 0.94667 1.69907 1.36800 1.37453 1.09741 0.85475 0.79842 0.78162 0.78052 1.19837 1.19995 1.20248 1.45876 1.30555 1.17288 1.06442 1.73522 1.20738 1.23753 0.90069 1.21150 1.06576 0.98306 0.93438 1.17058 0.78658 0.79499 0.85025 1.90681 1.49254 1.44295 1.59859 1.48011 1.39882 1.37484 1.08428 1.23182 0.90247 0.96339 0.97008 1.23065 0.95330 1.01620 0.82242 1.87925 1.71724 1.53272 1.17951 1.23117 0.88669 0.94234 0.96574 1.22515 0.99246 1.03632 0.79339 1.21179 1.05875 1.01716 0.92813 1.22506 1.01199 0.94409 0.98532 1.20835 0.92770 0.92473 0.94047 1.63727 1.41467 1.21874 1.00743 1.20579 0.94168 0.92044 0.93513 0.92743 0.92020 0.95367 0.88586 0.94104 0.91853 0.90592 0.86133 0.93131 0.86185 0.92901 0.84418 0.88160 0.89483 0.90269 0.88500 0.81519 0.89619 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.16 9.80 71.98 0.71 -4.45 16 2 C -0.12 -5.20 5.32 30.59 0.16 -5.04 16 3 C 0.28 12.62 2.37 44.24 0.10 12.72 16 4 H 0.05 2.58 8.04 -2.39 -0.02 2.56 16 5 C -0.54 -27.01 8.68 25.60 0.22 -26.79 16 6 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 7 C 0.04 1.80 5.29 84.65 0.45 2.25 16 8 N -0.90 -45.01 11.29 21.45 0.24 -44.77 16 9 Si 0.96 39.57 29.54 68.60 2.03 41.59 16 10 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 11 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 12 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 13 N -0.22 -9.18 2.48 -317.40 -0.79 -9.97 16 14 N -0.24 -10.28 8.07 -48.38 -0.39 -10.68 16 15 C -0.04 -1.60 6.82 42.33 0.29 -1.31 16 16 C 0.61 23.31 7.70 86.75 0.67 23.98 16 17 O -0.56 -22.85 16.40 -3.92 -0.06 -22.92 16 18 N -0.60 -19.56 3.01 -820.09 -2.47 -22.03 16 19 C 0.06 1.76 6.29 86.49 0.54 2.30 16 20 C 0.05 1.49 7.00 72.22 0.51 1.99 16 21 O -0.39 -10.06 10.74 -148.98 -1.60 -11.66 16 22 C 0.05 1.08 6.98 72.08 0.50 1.58 16 23 C 0.07 1.85 6.65 86.35 0.57 2.42 16 24 C -0.20 -7.80 6.96 -19.81 -0.14 -7.94 16 25 C -0.04 -1.46 7.63 41.53 0.32 -1.14 16 26 C 0.13 3.78 7.46 85.43 0.64 4.41 16 27 N -0.65 -16.55 7.76 -515.05 -4.00 -20.54 16 28 C 0.13 3.80 7.46 85.33 0.64 4.44 16 29 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 31 H 0.03 1.08 7.75 -2.39 -0.02 1.06 16 32 H 0.10 4.57 5.95 -2.39 -0.01 4.55 16 33 H 0.04 1.83 8.04 -2.39 -0.02 1.81 16 34 H 0.27 12.87 8.31 -92.71 -0.77 12.10 16 35 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 36 H 0.12 4.55 4.36 -8.73 -0.04 4.51 16 37 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 39 H 0.05 1.14 8.14 -2.38 -0.02 1.13 16 40 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.10 2.51 7.06 -2.38 -0.02 2.49 16 42 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 45 H 0.37 6.63 8.92 -89.69 -0.80 5.83 16 46 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 47 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -60.07 377.00 -0.69 -60.76 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: 0.17 Total: 30.79 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 6.18 Total: 9.43 kcal Atomic # 7 Polarization: -100.59 SS G_CDS: -7.41 Total: -107.99 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -1.66 Total: -34.58 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.59 kcal Total: -60.07 -0.69 -60.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255170440.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.605 kcal (2) G-P(sol) polarization free energy of solvation -60.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds