Wall clock time and date at job start Tue Mar 31 2020 19:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47589 * 2 1 4 4 H 1.09007 * 109.47066 * 304.25900 * 3 2 1 5 5 C 1.53001 * 109.47538 * 184.25924 * 3 2 1 6 6 N 1.46495 * 109.47155 * 185.00270 * 5 3 2 7 7 C 1.34775 * 120.00077 * 180.02562 * 6 5 3 8 8 O 1.21518 * 119.99900 * 359.97438 * 7 6 5 9 9 C 1.48167 * 120.00324 * 179.97438 * 7 6 5 10 10 C 1.39305 * 119.72589 * 179.72724 * 9 7 6 11 11 C 1.38595 * 119.05835 * 179.71329 * 10 9 7 12 12 C 1.38624 * 118.48748 * 0.54540 * 11 10 9 13 13 C 1.38554 * 119.35251 * 359.73494 * 12 11 10 14 14 C 1.50699 * 119.54756 * 180.02562 * 13 12 11 15 15 N 1.31523 * 120.90427 * 359.97358 * 13 12 11 16 16 N 1.46897 * 109.47187 * 64.25679 * 3 2 1 17 17 C 1.46906 * 111.00071 * 65.54788 * 16 3 2 18 18 C 1.50696 * 109.47168 * 183.46222 * 17 16 3 19 19 O 1.21287 * 120.00389 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99896 * 179.72474 * 18 17 16 21 21 C 1.37094 * 120.00076 * 179.97438 * 20 18 17 22 22 H 1.07996 * 120.00082 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99947 * 180.02562 * 21 20 18 24 24 N 1.31412 * 120.00057 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00108 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47262 * 59.99267 * 25 23 21 27 27 H 1.48499 * 109.47331 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47106 * 299.99752 * 25 23 21 29 29 H 1.08995 * 109.46997 * 294.73660 * 1 2 3 30 30 H 1.08998 * 109.46846 * 54.73714 * 1 2 3 31 31 H 1.09001 * 109.46804 * 174.73220 * 1 2 3 32 32 H 1.09008 * 109.46950 * 239.99694 * 2 1 3 33 33 H 1.09003 * 109.47116 * 120.00532 * 2 1 3 34 34 H 1.09003 * 109.46834 * 305.00253 * 5 3 2 35 35 H 1.08997 * 109.47231 * 64.99934 * 5 3 2 36 36 H 0.97005 * 120.00540 * 359.97438 * 6 5 3 37 37 H 1.08001 * 120.47002 * 359.97204 * 10 9 7 38 38 H 1.08004 * 120.74919 * 180.28152 * 11 10 9 39 39 H 1.08000 * 120.32183 * 179.75660 * 12 11 10 40 40 H 1.08998 * 109.47352 * 269.97674 * 14 13 12 41 41 H 1.09005 * 109.47344 * 29.97824 * 14 13 12 42 42 H 1.09000 * 109.47176 * 149.97565 * 14 13 12 43 43 H 1.00895 * 111.00401 * 189.50535 * 16 3 2 44 44 H 1.08995 * 109.46837 * 63.46295 * 17 16 3 45 45 H 1.08999 * 109.46857 * 303.46158 * 17 16 3 46 46 H 0.96996 * 119.99860 * 0.02562 * 20 18 17 47 47 H 0.97009 * 119.99967 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6158 1.9778 -0.8494 5 6 3.5664 1.4437 -0.1071 6 7 4.0632 2.8166 0.0129 7 6 5.3866 3.0626 -0.0530 8 8 6.1679 2.1454 -0.2113 9 6 5.8891 4.4512 0.0678 10 6 7.2586 4.6982 0.0047 11 6 7.7130 6.0030 0.1132 12 6 6.7823 7.0145 0.2927 13 6 5.4353 6.6953 0.3524 14 6 4.4197 7.7915 0.5468 15 7 5.0309 5.4488 0.2406 16 7 1.6363 2.1046 1.2475 17 6 2.2958 1.4898 2.4073 18 6 1.7939 2.1372 3.6722 19 8 0.9677 3.0233 3.6134 20 7 2.2586 1.7275 4.8691 21 6 1.8024 2.3168 6.0198 22 1 1.0704 3.1091 5.9672 23 6 2.2819 1.8948 7.2538 24 7 3.1723 0.9304 7.3178 25 14 1.6598 2.6973 8.8218 26 1 0.1904 2.5097 8.9245 27 1 2.3216 2.0712 9.9945 28 1 1.9726 4.1487 8.7927 29 1 -0.3633 0.4300 0.9333 30 1 -0.3633 0.5933 -0.8391 31 1 -0.3633 -1.0234 -0.0944 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.9872 0.8338 0.6923 35 1 3.8632 1.0329 -1.0721 36 1 3.4395 3.5489 0.1389 37 1 7.9561 3.8848 -0.1311 38 1 8.7686 6.2261 0.0635 39 1 7.1039 8.0414 0.3848 40 1 4.2466 7.9417 1.6124 41 1 4.7934 8.7156 0.1056 42 1 3.4844 7.5102 0.0628 43 1 1.8236 3.0952 1.2081 44 1 3.3737 1.6315 2.3296 45 1 2.0702 0.4237 2.4306 46 1 2.9164 1.0162 4.9164 47 1 3.5068 0.6355 8.1794 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267796895.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:13 Heat of formation + Delta-G solvation = -41.186296 kcal Electronic energy + Delta-G solvation = -28732.883592 eV Core-core repulsion = 24722.362548 eV Total energy + Delta-G solvation = -4010.521044 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.86772 -39.48752 -38.42368 -37.20740 -34.18997 -33.86111 -33.25150 -32.65435 -31.92940 -31.14575 -28.73332 -27.94052 -26.56848 -24.99124 -24.16359 -23.14113 -22.26799 -20.77390 -20.21053 -19.04405 -18.20921 -17.87130 -16.83934 -16.78366 -16.28993 -15.67131 -15.58952 -15.33359 -14.87931 -14.68480 -14.35401 -14.25347 -13.98381 -13.83850 -13.65770 -13.43683 -13.37323 -13.17826 -12.71043 -12.49951 -12.48486 -12.21035 -12.12778 -11.88154 -11.61915 -11.42998 -11.26499 -10.99356 -10.83936 -10.54844 -10.43135 -10.42087 -10.21047 -10.18007 -9.73535 -9.46337 -9.31945 -9.09675 -8.45464 -8.04014 -7.92147 -6.38000 -3.78794 0.42154 0.94391 2.58585 2.93830 3.21882 3.27289 3.31662 3.64100 3.81108 3.95366 4.12614 4.35100 4.39795 4.53340 4.68764 4.70150 4.79281 4.91740 5.11566 5.15748 5.23843 5.29074 5.30029 5.32779 5.38562 5.40625 5.55227 5.58971 5.74369 5.80627 5.81517 5.84281 5.84947 5.94671 6.03020 6.11407 6.25503 6.29456 6.33436 6.34960 6.57836 7.18623 7.26461 7.57772 7.58055 7.62114 8.05507 8.09566 8.65288 9.21434 9.58509 10.10234 10.79723 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.007760 B = 0.003608 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3607.311870 B = 7759.543950 C = 9906.203253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C 0.077 3.923 4 H 0.089 0.911 5 C 0.078 3.922 6 N -0.707 5.707 7 C 0.573 3.427 8 O -0.534 6.534 9 C 0.085 3.915 10 C -0.120 4.120 11 C -0.079 4.079 12 C -0.151 4.151 13 C 0.130 3.870 14 C -0.106 4.106 15 N -0.457 5.457 16 N -0.652 5.652 17 C 0.044 3.956 18 C 0.443 3.557 19 O -0.582 6.582 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.273 1.273 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.071 0.929 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.410 0.590 37 H 0.148 0.852 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.346 0.654 44 H 0.045 0.955 45 H 0.089 0.911 46 H 0.391 0.609 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.834 7.294 -17.911 20.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C -0.034 4.034 4 H 0.107 0.893 5 C -0.048 4.048 6 N -0.359 5.359 7 C 0.357 3.643 8 O -0.410 6.410 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.104 4.104 12 C -0.171 4.171 13 C -0.011 4.011 14 C -0.164 4.164 15 N -0.170 5.170 16 N -0.284 5.284 17 C -0.089 4.089 18 C 0.228 3.772 19 O -0.466 6.466 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.200 1.200 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.247 0.753 37 H 0.166 0.834 38 H 0.160 0.840 39 H 0.158 0.842 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.166 0.834 44 H 0.063 0.937 45 H 0.107 0.893 46 H 0.224 0.776 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.426 6.537 -17.770 19.697 hybrid contribution 1.858 0.743 0.888 2.189 sum 7.284 7.281 -16.883 19.776 Atomic orbital electron populations 1.21619 0.94604 1.00567 1.03092 1.21506 0.97358 0.94257 1.02001 1.21989 0.90315 0.97323 0.93804 0.89260 1.22290 0.96788 0.82854 1.02851 1.45793 1.07268 1.10324 1.72544 1.17855 0.82615 0.86941 0.76848 1.90784 1.56058 1.44595 1.49557 1.21100 0.90936 0.93062 1.00245 1.22105 0.95806 0.98186 0.97948 1.21622 1.00647 0.92123 0.96054 1.22205 0.93692 1.00951 1.00249 1.21349 0.93358 0.91780 0.94579 1.20771 0.97626 0.94343 1.03621 1.67380 1.39035 0.99938 1.10642 1.60207 1.60578 1.07599 1.00018 1.21770 0.96348 1.00017 0.90734 1.19792 0.86134 0.86846 0.84408 1.90515 1.35795 1.33556 1.86748 1.41850 1.39033 1.34584 1.04638 1.19639 1.22688 1.17601 0.82923 0.88023 1.25249 0.96551 0.96693 0.99425 1.69612 1.29949 1.28147 1.26634 0.85934 0.78930 0.79121 0.80319 1.19882 1.20999 1.19982 0.91009 0.93206 0.93535 0.91805 0.91400 0.90596 0.90910 0.75311 0.83447 0.83984 0.84205 0.89776 0.90559 0.90034 0.83359 0.93657 0.89302 0.77551 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.73 37.16 0.36 -1.29 16 2 C -0.11 -1.25 5.31 -26.73 -0.14 -1.40 16 3 C 0.08 0.90 2.71 -67.72 -0.18 0.72 16 4 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 5 C 0.08 0.95 4.47 -4.04 -0.02 0.94 16 6 N -0.71 -9.33 5.30 -61.15 -0.32 -9.66 16 7 C 0.57 8.49 7.81 -12.18 -0.10 8.40 16 8 O -0.53 -9.11 16.32 5.35 0.09 -9.02 16 9 C 0.09 1.14 6.75 -83.01 -0.56 0.58 16 10 C -0.12 -1.36 9.63 -39.05 -0.38 -1.73 16 11 C -0.08 -0.68 10.17 -39.31 -0.40 -1.08 16 12 C -0.15 -1.28 9.75 -39.32 -0.38 -1.67 16 13 C 0.13 1.37 6.78 -82.61 -0.56 0.81 16 14 C -0.11 -0.85 10.17 36.00 0.37 -0.48 16 15 N -0.46 -5.90 9.45 -6.06 -0.06 -5.96 16 16 N -0.65 -10.04 5.41 -107.99 -0.58 -10.62 16 17 C 0.04 0.78 5.30 -4.97 -0.03 0.75 16 18 C 0.44 10.57 7.83 -10.99 -0.09 10.48 16 19 O -0.58 -15.79 15.85 5.55 0.09 -15.70 16 20 N -0.56 -14.60 5.29 -10.97 -0.06 -14.66 16 21 C -0.30 -8.46 9.68 -14.94 -0.14 -8.61 16 22 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -25.00 13.05 55.50 0.72 -24.28 16 25 Si 0.93 21.35 29.55 -169.99 -5.02 16.33 16 26 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 28 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 29 H 0.07 1.03 7.88 -51.93 -0.41 0.62 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 33 H 0.07 0.81 6.28 -51.93 -0.33 0.49 16 34 H 0.08 1.05 6.71 -51.93 -0.35 0.70 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.41 5.22 6.56 -40.82 -0.27 4.96 16 37 H 0.15 1.58 7.64 -52.49 -0.40 1.18 16 38 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 39 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.41 8.08 -51.93 -0.42 -0.01 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.35 5.53 7.29 -39.29 -0.29 5.24 16 44 H 0.05 0.79 6.49 -51.93 -0.34 0.46 16 45 H 0.09 1.48 6.22 -51.93 -0.32 1.16 16 46 H 0.39 9.81 7.90 -40.82 -0.32 9.49 16 47 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 392.76 15.07 5.92 5.92 Total: -1.00 -33.84 392.76 -8.33 -42.17 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: -6.76 Total: 18.55 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -2.34 Total: 6.94 kcal Atomic # 7 Polarization: -64.88 SS G_CDS: -0.30 Total: -65.18 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: 0.18 Total: -24.72 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.84 -8.33 -42.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267796895.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.980 kcal (2) G-P(sol) polarization free energy of solvation -33.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds