Wall clock time and date at job start Tue Mar 31 2020 19:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47589 * 2 1 4 4 H 1.09007 * 109.47066 * 304.25900 * 3 2 1 5 5 C 1.53001 * 109.47538 * 184.25924 * 3 2 1 6 6 N 1.46495 * 109.47155 * 185.00270 * 5 3 2 7 7 C 1.34775 * 120.00077 * 180.02562 * 6 5 3 8 8 O 1.21518 * 119.99900 * 359.97438 * 7 6 5 9 9 C 1.48167 * 120.00324 * 179.97438 * 7 6 5 10 10 C 1.39305 * 119.72589 * 179.72724 * 9 7 6 11 11 C 1.38595 * 119.05835 * 179.71329 * 10 9 7 12 12 C 1.38624 * 118.48748 * 0.54540 * 11 10 9 13 13 C 1.38554 * 119.35251 * 359.73494 * 12 11 10 14 14 C 1.50699 * 119.54756 * 180.02562 * 13 12 11 15 15 N 1.31523 * 120.90427 * 359.97358 * 13 12 11 16 16 N 1.46897 * 109.47187 * 64.25679 * 3 2 1 17 17 C 1.46906 * 111.00071 * 65.54788 * 16 3 2 18 18 C 1.50696 * 109.47168 * 183.46222 * 17 16 3 19 19 O 1.21287 * 120.00389 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99896 * 179.72474 * 18 17 16 21 21 C 1.37094 * 120.00076 * 179.97438 * 20 18 17 22 22 H 1.07996 * 120.00082 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99947 * 180.02562 * 21 20 18 24 24 N 1.31412 * 120.00057 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00108 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47262 * 59.99267 * 25 23 21 27 27 H 1.48499 * 109.47331 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47106 * 299.99752 * 25 23 21 29 29 H 1.08995 * 109.46997 * 294.73660 * 1 2 3 30 30 H 1.08998 * 109.46846 * 54.73714 * 1 2 3 31 31 H 1.09001 * 109.46804 * 174.73220 * 1 2 3 32 32 H 1.09008 * 109.46950 * 239.99694 * 2 1 3 33 33 H 1.09003 * 109.47116 * 120.00532 * 2 1 3 34 34 H 1.09003 * 109.46834 * 305.00253 * 5 3 2 35 35 H 1.08997 * 109.47231 * 64.99934 * 5 3 2 36 36 H 0.97005 * 120.00540 * 359.97438 * 6 5 3 37 37 H 1.08001 * 120.47002 * 359.97204 * 10 9 7 38 38 H 1.08004 * 120.74919 * 180.28152 * 11 10 9 39 39 H 1.08000 * 120.32183 * 179.75660 * 12 11 10 40 40 H 1.08998 * 109.47352 * 269.97674 * 14 13 12 41 41 H 1.09005 * 109.47344 * 29.97824 * 14 13 12 42 42 H 1.09000 * 109.47176 * 149.97565 * 14 13 12 43 43 H 1.00895 * 111.00401 * 189.50535 * 16 3 2 44 44 H 1.08995 * 109.46837 * 63.46295 * 17 16 3 45 45 H 1.08999 * 109.46857 * 303.46158 * 17 16 3 46 46 H 0.96996 * 119.99860 * 0.02562 * 20 18 17 47 47 H 0.97009 * 119.99967 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6158 1.9778 -0.8494 5 6 3.5664 1.4437 -0.1071 6 7 4.0632 2.8166 0.0129 7 6 5.3866 3.0626 -0.0530 8 8 6.1679 2.1454 -0.2113 9 6 5.8891 4.4512 0.0678 10 6 7.2586 4.6982 0.0047 11 6 7.7130 6.0030 0.1132 12 6 6.7823 7.0145 0.2927 13 6 5.4353 6.6953 0.3524 14 6 4.4197 7.7915 0.5468 15 7 5.0309 5.4488 0.2406 16 7 1.6363 2.1046 1.2475 17 6 2.2958 1.4898 2.4073 18 6 1.7939 2.1372 3.6722 19 8 0.9677 3.0233 3.6134 20 7 2.2586 1.7275 4.8691 21 6 1.8024 2.3168 6.0198 22 1 1.0704 3.1091 5.9672 23 6 2.2819 1.8948 7.2538 24 7 3.1723 0.9304 7.3178 25 14 1.6598 2.6973 8.8218 26 1 0.1904 2.5097 8.9245 27 1 2.3216 2.0712 9.9945 28 1 1.9726 4.1487 8.7927 29 1 -0.3633 0.4300 0.9333 30 1 -0.3633 0.5933 -0.8391 31 1 -0.3633 -1.0234 -0.0944 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.9872 0.8338 0.6923 35 1 3.8632 1.0329 -1.0721 36 1 3.4395 3.5489 0.1389 37 1 7.9561 3.8848 -0.1311 38 1 8.7686 6.2261 0.0635 39 1 7.1039 8.0414 0.3848 40 1 4.2466 7.9417 1.6124 41 1 4.7934 8.7156 0.1056 42 1 3.4844 7.5102 0.0628 43 1 1.8236 3.0952 1.2081 44 1 3.3737 1.6315 2.3296 45 1 2.0702 0.4237 2.4306 46 1 2.9164 1.0162 4.9164 47 1 3.5068 0.6355 8.1794 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267796895.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:12 Heat of formation + Delta-G solvation = -66.995299 kcal Electronic energy + Delta-G solvation = -28734.002754 eV Core-core repulsion = 24722.362548 eV Total energy + Delta-G solvation = -4011.640206 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.77821 -40.63060 -39.99588 -38.61199 -35.97978 -35.21540 -34.01463 -33.46218 -33.36117 -33.01122 -29.85761 -28.73403 -28.07981 -26.23778 -25.69476 -24.04230 -23.04278 -21.92161 -21.53607 -20.59492 -19.87439 -19.19485 -18.33404 -17.70302 -17.14488 -17.02678 -16.75601 -16.58700 -16.34427 -15.95969 -15.77031 -15.65474 -15.23317 -15.09398 -14.77435 -14.61237 -14.38952 -14.07716 -13.98928 -13.77984 -13.48460 -13.29712 -13.12990 -13.11159 -12.91965 -12.88508 -12.68135 -12.44083 -12.31111 -12.13647 -11.82406 -11.56707 -11.49623 -11.47401 -10.97571 -10.60324 -10.37346 -10.32226 -10.02682 -9.97803 -9.39815 -8.47115 -5.96369 -0.42701 0.18834 1.38673 1.40016 1.51513 1.59038 1.93216 2.04092 2.28093 2.76858 2.87473 2.99976 3.19524 3.48541 3.63526 3.68967 3.82031 3.97901 4.01816 4.05252 4.17162 4.28127 4.35775 4.40967 4.43635 4.55168 4.55912 4.63430 4.66960 4.73571 4.79482 4.91771 4.97683 5.06884 5.08459 5.18001 5.19039 5.24911 5.37433 5.39313 5.58031 5.61739 5.85302 6.06010 6.21560 6.33075 6.58300 6.72427 6.99103 7.11193 7.54384 8.09462 8.70235 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.007760 B = 0.003608 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3607.311870 B = 7759.543950 C = 9906.203253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 C 0.086 3.914 4 H 0.110 0.890 5 C 0.081 3.919 6 N -0.703 5.703 7 C 0.566 3.434 8 O -0.566 6.566 9 C 0.052 3.948 10 C -0.130 4.130 11 C -0.074 4.074 12 C -0.138 4.138 13 C 0.109 3.891 14 C -0.104 4.104 15 N -0.481 5.481 16 N -0.658 5.658 17 C 0.064 3.936 18 C 0.440 3.560 19 O -0.617 6.617 20 N -0.575 5.575 21 C -0.334 4.334 22 H 0.080 0.920 23 C -0.014 4.014 24 N -0.922 5.922 25 Si 0.994 3.006 26 H -0.270 1.270 27 H -0.271 1.271 28 H -0.271 1.271 29 H 0.039 0.961 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.412 0.588 37 H 0.146 0.854 38 H 0.179 0.821 39 H 0.179 0.821 40 H 0.080 0.920 41 H 0.107 0.893 42 H 0.072 0.928 43 H 0.342 0.658 44 H 0.050 0.950 45 H 0.104 0.896 46 H 0.393 0.607 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.637 8.436 -18.580 21.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.150 4.150 3 C -0.025 4.025 4 H 0.128 0.872 5 C -0.044 4.044 6 N -0.354 5.354 7 C 0.352 3.648 8 O -0.445 6.445 9 C -0.085 4.085 10 C -0.151 4.151 11 C -0.099 4.099 12 C -0.158 4.158 13 C -0.031 4.031 14 C -0.161 4.161 15 N -0.195 5.195 16 N -0.290 5.290 17 C -0.068 4.068 18 C 0.227 3.773 19 O -0.503 6.503 20 N -0.212 5.212 21 C -0.463 4.463 22 H 0.098 0.902 23 C -0.213 4.213 24 N -0.563 5.563 25 Si 0.817 3.183 26 H -0.195 1.195 27 H -0.195 1.195 28 H -0.196 1.196 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.249 0.751 37 H 0.164 0.836 38 H 0.197 0.803 39 H 0.197 0.803 40 H 0.098 0.902 41 H 0.126 0.874 42 H 0.091 0.909 43 H 0.162 0.838 44 H 0.068 0.932 45 H 0.122 0.878 46 H 0.227 0.773 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.221 7.659 -18.461 20.933 hybrid contribution 1.611 0.454 1.029 1.965 sum 7.833 8.113 -17.432 20.762 Atomic orbital electron populations 1.21571 0.94877 1.01289 1.01785 1.21539 0.96989 0.93596 1.02878 1.22076 0.90022 0.97897 0.92460 0.87228 1.22293 0.96787 0.82329 1.02977 1.45815 1.07006 1.10706 1.71886 1.18221 0.82739 0.87577 0.76222 1.90744 1.56740 1.45682 1.51351 1.21023 0.92000 0.92544 1.02911 1.22278 0.94990 0.99709 0.98153 1.22062 1.02590 0.90784 0.94445 1.22658 0.92584 1.02800 0.97743 1.21926 0.95207 0.91436 0.94546 1.20842 0.96921 0.94843 1.03512 1.67318 1.39631 1.00885 1.11622 1.60211 1.60622 1.07512 1.00641 1.21526 0.96328 1.00205 0.88745 1.20800 0.84930 0.85991 0.85571 1.90481 1.37230 1.35062 1.87517 1.41938 1.39427 1.34863 1.04955 1.19645 1.23700 1.18400 0.84596 0.90165 1.26068 0.96316 0.96934 1.02002 1.69685 1.30270 1.28664 1.27708 0.84982 0.78485 0.78272 0.76561 1.19544 1.19508 1.19618 0.94206 0.92092 0.92308 0.89051 0.92402 0.92097 0.89571 0.75114 0.83607 0.80347 0.80336 0.90164 0.87410 0.90900 0.83836 0.93189 0.87768 0.77341 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.73 71.98 0.70 -2.32 16 2 C -0.11 -2.30 5.31 30.59 0.16 -2.14 16 3 C 0.09 1.92 2.71 44.91 0.12 2.05 16 4 H 0.11 2.10 8.14 -2.38 -0.02 2.08 16 5 C 0.08 1.96 4.47 86.38 0.39 2.35 16 6 N -0.70 -18.87 5.30 -465.67 -2.47 -21.34 16 7 C 0.57 17.36 7.81 86.88 0.68 18.04 16 8 O -0.57 -19.98 16.32 -3.77 -0.06 -20.04 16 9 C 0.05 1.44 6.75 41.91 0.28 1.72 16 10 C -0.13 -2.92 9.63 22.61 0.22 -2.70 16 11 C -0.07 -1.10 10.17 22.45 0.23 -0.88 16 12 C -0.14 -1.97 9.75 22.44 0.22 -1.75 16 13 C 0.11 2.18 6.78 42.68 0.29 2.47 16 14 C -0.10 -1.51 10.17 71.24 0.72 -0.79 16 15 N -0.48 -12.55 9.45 -173.09 -1.64 -14.19 16 16 N -0.66 -20.28 5.41 -495.58 -2.68 -22.96 16 17 C 0.06 2.32 5.30 85.55 0.45 2.78 16 18 C 0.44 21.61 7.83 87.66 0.69 22.29 16 19 O -0.62 -34.54 15.85 -3.05 -0.05 -34.59 16 20 N -0.57 -30.65 5.29 -307.00 -1.62 -32.27 16 21 C -0.33 -19.43 9.68 84.04 0.81 -18.62 16 22 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16 23 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 24 N -0.92 -51.24 13.05 21.66 0.28 -50.95 16 25 Si 0.99 43.70 29.55 68.60 2.03 45.73 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 28 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 29 H 0.04 1.13 7.88 -2.39 -0.02 1.11 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.06 1.32 6.28 -2.39 -0.01 1.30 16 34 H 0.06 1.68 6.71 -2.39 -0.02 1.66 16 35 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.41 10.75 6.56 -92.70 -0.61 10.14 16 37 H 0.15 3.18 7.64 -2.91 -0.02 3.16 16 38 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 39 H 0.18 1.10 8.06 -2.91 -0.02 1.07 16 40 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.11 0.84 8.08 -2.38 -0.02 0.82 16 42 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.34 11.08 7.29 -89.70 -0.65 10.43 16 44 H 0.05 1.78 6.49 -2.39 -0.02 1.77 16 45 H 0.10 3.47 6.22 -2.39 -0.01 3.46 16 46 H 0.39 20.29 7.90 -92.71 -0.73 19.56 16 47 H 0.28 14.44 8.31 -92.70 -0.77 13.67 16 Total: -1.00 -75.81 392.76 -0.75 -76.56 By element: Atomic # 1 Polarization: 52.81 SS G_CDS: -0.97 Total: 51.84 kcal Atomic # 6 Polarization: 15.79 SS G_CDS: 6.43 Total: 22.23 kcal Atomic # 7 Polarization: -133.59 SS G_CDS: -8.12 Total: -141.72 kcal Atomic # 8 Polarization: -54.52 SS G_CDS: -0.11 Total: -54.63 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -75.81 -0.75 -76.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267796895.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.560 kcal (2) G-P(sol) polarization free energy of solvation -75.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds