Wall clock time and date at job start Tue Mar 31 2020 17:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47144 * 2 1 4 4 C 1.53003 * 109.47117 * 119.99870 * 2 1 3 5 5 C 1.53000 * 109.46745 * 64.99808 * 4 2 1 6 6 H 1.08997 * 109.47488 * 304.99916 * 5 4 2 7 7 C 1.53004 * 109.46624 * 184.99815 * 5 4 2 8 8 N 1.46504 * 109.46936 * 185.00174 * 7 5 4 9 9 C 1.36929 * 119.99912 * 180.02562 * 8 7 5 10 10 H 1.08002 * 120.00475 * 359.97438 * 9 8 7 11 11 C 1.38818 * 120.00005 * 180.02562 * 9 8 7 12 12 N 1.31615 * 120.00078 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00083 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47332 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47345 * 119.99835 * 13 11 9 16 16 H 1.48504 * 109.47141 * 239.99746 * 13 11 9 17 17 N 1.46501 * 109.47059 * 65.00111 * 5 4 2 18 18 C 1.34777 * 120.00180 * 274.99438 * 17 5 4 19 19 O 1.21531 * 119.99805 * 0.02562 * 18 17 5 20 20 C 1.47999 * 120.00075 * 179.97438 * 18 17 5 21 21 C 1.39872 * 120.46076 * 179.97438 * 20 18 17 22 22 C 1.38454 * 118.35544 * 180.02562 * 21 20 18 23 23 C 1.39295 * 119.19150 * 0.02562 * 22 21 20 24 24 C 1.48340 * 119.57362 * 180.02562 * 23 22 21 25 25 N 1.34775 * 120.00219 * 179.97438 * 24 23 22 26 26 O 1.21494 * 119.99687 * 359.97438 * 24 23 22 27 27 N 1.32714 * 120.85766 * 359.97438 * 23 22 21 28 28 C 1.31415 * 121.80348 * 0.02562 * 27 23 22 29 29 H 1.08994 * 109.47146 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46817 * 300.00325 * 1 2 3 31 31 H 1.09006 * 109.47246 * 59.99640 * 1 2 3 32 32 H 1.09002 * 109.47122 * 240.00128 * 2 1 3 33 33 H 1.09000 * 109.47185 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.46781 * 299.99922 * 3 2 1 35 35 H 1.09002 * 109.47007 * 60.00058 * 3 2 1 36 36 H 1.08996 * 109.46833 * 304.99905 * 4 2 1 37 37 H 1.08995 * 109.46759 * 184.99709 * 4 2 1 38 38 H 1.08995 * 109.47388 * 305.00036 * 7 5 4 39 39 H 1.09002 * 109.47168 * 65.00245 * 7 5 4 40 40 H 0.97002 * 119.99791 * 0.02562 * 8 7 5 41 41 H 0.96997 * 120.00558 * 179.97438 * 12 11 9 42 42 H 0.97003 * 120.00195 * 95.00006 * 17 5 4 43 43 H 1.07996 * 120.82109 * 0.02562 * 21 20 18 44 44 H 1.08003 * 120.39925 * 180.02562 * 22 21 20 45 45 H 0.97003 * 120.00046 * 359.97438 * 25 24 23 46 46 H 0.96995 * 120.00039 * 180.02562 * 25 24 23 47 47 H 1.08004 * 119.64552 * 180.02562 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 -2.1954 1.1880 6 1 0.5563 -2.2706 1.0527 7 6 2.0354 -2.8887 2.4919 8 7 1.7569 -4.3233 2.3876 9 6 2.0349 -5.1530 3.4407 10 1 2.4599 -4.7501 4.3482 11 6 1.7716 -6.5124 3.3417 12 7 1.2542 -7.0036 2.2357 13 14 2.1515 -7.6445 4.7782 14 1 2.7239 -6.8513 5.8956 15 1 0.9018 -8.3071 5.2302 16 1 3.1315 -8.6751 4.3505 17 7 2.3146 -2.8420 0.0626 18 6 1.7814 -2.7779 -1.1735 19 8 0.7371 -2.1832 -1.3547 20 6 2.4681 -3.4306 -2.3105 21 6 1.9230 -3.3705 -3.5972 22 6 2.6016 -3.9969 -4.6288 23 6 3.7945 -4.6611 -4.3526 24 6 4.5288 -5.3346 -5.4515 25 7 5.6841 -5.9793 -5.1941 26 8 4.0888 -5.3051 -6.5836 27 7 4.2832 -4.6982 -3.1192 28 6 3.6694 -4.1164 -2.1133 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6054 -0.2617 2.1369 37 1 3.1263 -0.6443 1.2951 38 1 3.0996 -2.7374 2.6721 39 1 1.4633 -2.4667 3.3182 40 1 1.3756 -4.6853 1.5724 41 1 1.0705 -7.9535 2.1663 42 1 3.1483 -3.3164 0.2071 43 1 0.9958 -2.8484 -3.7815 44 1 2.2107 -3.9709 -5.6353 45 1 6.0356 -6.0025 -4.2903 46 1 6.1644 -6.4194 -5.9127 47 1 4.0987 -4.1681 -1.1236 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268116096.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:13 Heat of formation + Delta-G solvation = -60.606855 kcal Electronic energy + Delta-G solvation = -29028.897376 eV Core-core repulsion = 25017.534194 eV Total energy + Delta-G solvation = -4011.363182 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.02292 -40.97855 -39.73875 -37.97753 -36.42968 -35.13211 -34.96608 -33.52092 -33.34767 -32.36696 -30.47853 -27.92300 -27.15949 -26.70887 -24.77627 -24.63172 -23.07555 -22.07498 -21.45311 -20.79199 -19.55522 -19.22947 -18.73017 -18.19577 -17.48446 -16.95838 -16.72962 -16.49185 -16.25521 -16.10742 -15.79400 -15.45094 -15.20863 -15.17677 -14.75520 -14.50874 -14.47676 -14.29977 -14.16358 -13.87054 -13.60429 -13.18743 -12.99927 -12.93082 -12.81852 -12.51809 -12.31246 -12.03557 -11.86699 -11.68487 -11.62322 -11.37510 -11.25352 -11.18395 -11.09102 -10.95425 -10.80752 -10.62040 -10.40225 -9.91260 -8.97692 -7.92257 -5.20789 -0.88320 0.03420 1.28513 1.49575 1.51043 1.59982 1.99987 2.11518 2.24509 2.57991 2.75867 3.01504 3.42968 3.55658 3.67097 3.68245 3.81421 3.83912 4.01465 4.03257 4.12328 4.28002 4.40201 4.45074 4.52225 4.69958 4.78953 4.84067 4.88389 4.92261 4.93888 4.95924 5.04155 5.13469 5.20439 5.26615 5.27698 5.42468 5.54781 5.60343 5.60950 5.69293 5.73430 6.16979 6.28683 6.50798 6.55407 7.14368 7.19750 7.36979 8.10903 8.34043 9.30666 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.007253 B = 0.004052 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3859.335970 B = 6908.456733 C =10049.616145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.090 4.090 3 C -0.141 4.141 4 C -0.114 4.114 5 C 0.147 3.853 6 H 0.070 0.930 7 C 0.143 3.857 8 N -0.742 5.742 9 C -0.239 4.239 10 H 0.079 0.921 11 C -0.070 4.070 12 N -0.967 5.967 13 Si 0.967 3.033 14 H -0.265 1.265 15 H -0.300 1.300 16 H -0.295 1.295 17 N -0.697 5.697 18 C 0.559 3.441 19 O -0.545 6.545 20 C -0.163 4.163 21 C -0.021 4.021 22 C -0.117 4.117 23 C 0.079 3.921 24 C 0.577 3.423 25 N -0.814 5.814 26 O -0.568 6.568 27 N -0.461 5.461 28 C 0.136 3.864 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.041 0.959 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.042 0.958 39 H 0.037 0.963 40 H 0.375 0.625 41 H 0.248 0.752 42 H 0.407 0.593 43 H 0.164 0.836 44 H 0.166 0.834 45 H 0.421 0.579 46 H 0.417 0.583 47 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.302 11.925 -10.517 17.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.108 4.108 3 C -0.199 4.199 4 C -0.153 4.153 5 C 0.042 3.958 6 H 0.088 0.912 7 C 0.017 3.983 8 N -0.385 5.385 9 C -0.371 4.371 10 H 0.097 0.903 11 C -0.263 4.263 12 N -0.618 5.618 13 Si 0.797 3.203 14 H -0.189 1.189 15 H -0.228 1.228 16 H -0.222 1.222 17 N -0.348 5.348 18 C 0.345 3.655 19 O -0.424 6.424 20 C -0.168 4.168 21 C -0.048 4.048 22 C -0.138 4.138 23 C -0.059 4.059 24 C 0.360 3.640 25 N -0.377 5.377 26 O -0.447 6.447 27 N -0.172 5.172 28 C -0.025 4.025 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.207 0.793 41 H 0.057 0.943 42 H 0.244 0.756 43 H 0.182 0.818 44 H 0.183 0.817 45 H 0.253 0.747 46 H 0.250 0.750 47 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 8.038 11.985 -10.951 18.116 hybrid contribution -0.334 -1.194 0.566 1.363 sum 7.704 10.791 -10.385 16.842 Atomic orbital electron populations 1.21776 0.95704 1.01537 1.00156 1.21085 0.95867 0.96098 0.97798 1.21813 1.00891 0.95418 1.01757 1.21969 1.01904 0.92441 0.98954 1.21243 0.97297 0.92587 0.84634 0.91159 1.21140 0.98729 0.83776 0.94678 1.42520 1.76510 1.02888 1.16594 1.19643 1.33110 0.89346 0.94978 0.90326 1.25458 1.02653 0.98553 0.99621 1.69815 1.51541 1.12444 1.27981 0.85168 0.76647 0.79040 0.79457 1.18892 1.22765 1.22198 1.45839 1.27190 1.54938 1.06824 1.18110 0.84647 0.79717 0.83023 1.90769 1.23372 1.43656 1.84627 1.21268 0.97951 1.02192 0.95395 1.21906 0.99156 0.93623 0.90101 1.22236 0.94095 0.95615 1.01835 1.21412 0.94614 0.98002 0.91857 1.17905 0.81541 0.78227 0.86335 1.43525 1.23361 1.54611 1.16211 1.90815 1.68724 1.62354 1.22769 1.67527 1.33378 1.17316 0.98955 1.23221 0.90535 0.90174 0.98526 0.93021 0.93244 0.93941 0.92230 0.92400 0.93050 0.92185 0.89957 0.90360 0.94047 0.94547 0.79315 0.94267 0.75582 0.81845 0.81672 0.74669 0.75005 0.80124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 8.03 71.98 0.58 -2.91 16 2 C -0.09 -2.11 2.38 -10.79 -0.03 -2.13 16 3 C -0.14 -2.67 9.19 71.98 0.66 -2.01 16 4 C -0.11 -2.60 4.36 30.60 0.13 -2.47 16 5 C 0.15 4.28 2.33 44.99 0.10 4.38 16 6 H 0.07 2.42 5.92 -2.39 -0.01 2.41 16 7 C 0.14 4.94 5.82 86.38 0.50 5.44 16 8 N -0.74 -34.21 5.43 -343.44 -1.87 -36.08 16 9 C -0.24 -12.41 9.99 84.04 0.84 -11.57 16 10 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 11 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 12 N -0.97 -57.07 13.06 21.65 0.28 -56.79 16 13 Si 0.97 44.39 29.55 68.60 2.03 46.42 16 14 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 15 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 16 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 17 N -0.70 -19.17 4.42 -445.26 -1.97 -21.14 16 18 C 0.56 15.99 6.34 86.83 0.55 16.54 16 19 O -0.54 -17.72 11.36 -3.81 -0.04 -17.77 16 20 C -0.16 -4.09 5.90 -19.93 -0.12 -4.20 16 21 C -0.02 -0.49 9.71 22.72 0.22 -0.27 16 22 C -0.12 -2.59 9.62 22.58 0.22 -2.37 16 23 C 0.08 1.85 6.75 41.96 0.28 2.13 16 24 C 0.58 13.14 8.09 86.93 0.70 13.84 16 25 N -0.81 -12.39 8.86 -175.26 -1.55 -13.94 16 26 O -0.57 -16.16 17.15 -3.70 -0.06 -16.22 16 27 N -0.46 -10.62 9.52 -183.90 -1.75 -12.37 16 28 C 0.14 3.17 10.71 85.12 0.91 4.09 16 29 H 0.05 1.61 4.75 -2.39 -0.01 1.60 16 30 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.06 1.59 5.19 -2.39 -0.01 1.57 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.37 18.85 7.33 -92.71 -0.68 18.17 16 41 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 42 H 0.41 10.37 6.66 -92.71 -0.62 9.76 16 43 H 0.16 3.43 7.73 -2.91 -0.02 3.41 16 44 H 0.17 3.22 7.63 -2.91 -0.02 3.20 16 45 H 0.42 5.42 8.15 -92.71 -0.76 4.67 16 46 H 0.42 4.58 8.93 -92.71 -0.83 3.75 16 47 H 0.18 3.63 6.41 -2.91 -0.02 3.61 16 Total: -1.00 -68.29 383.52 -0.74 -69.03 By element: Atomic # 1 Polarization: 45.59 SS G_CDS: -1.83 Total: 43.76 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: 6.03 Total: 15.11 kcal Atomic # 7 Polarization: -133.47 SS G_CDS: -6.86 Total: -140.32 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -0.11 Total: -33.99 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -68.29 -0.74 -69.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268116096.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.420 kcal (2) G-P(sol) polarization free energy of solvation -68.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds