Wall clock time and date at job start Tue Mar 31 2020 19:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47067 * 2 1 4 4 N 1.46501 * 109.46898 * 119.99974 * 2 1 3 5 5 C 1.35526 * 125.68399 * 294.92949 * 4 2 1 6 6 C 1.35448 * 108.87629 * 179.97438 * 5 4 2 7 7 C 1.39834 * 107.86300 * 0.02562 * 6 5 4 8 8 C 1.37658 * 125.67411 * 114.62584 * 4 2 1 9 9 C 1.46678 * 126.23178 * 0.02562 * 8 4 2 10 10 O 1.21698 * 120.00303 * 5.04238 * 9 8 4 11 11 N 1.34778 * 119.99688 * 185.04700 * 9 8 4 12 12 C 1.46497 * 119.99753 * 185.11368 * 11 9 8 13 13 C 1.53938 * 113.73132 * 251.72208 * 12 11 9 14 14 N 1.47964 * 86.18231 * 221.92274 * 13 12 11 15 15 C 1.46897 * 111.00042 * 137.58296 * 14 13 12 16 16 C 1.50699 * 109.47337 * 70.64148 * 15 14 13 17 17 O 1.21297 * 119.99616 * 0.02562 * 16 15 14 18 18 N 1.34770 * 120.00460 * 179.97438 * 16 15 14 19 19 C 1.37091 * 120.00333 * 179.97438 * 18 16 15 20 20 H 1.07998 * 119.99917 * 0.02562 * 19 18 16 21 21 C 1.38958 * 120.00040 * 180.02562 * 19 18 16 22 22 N 1.31409 * 120.00016 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99913 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46937 * 59.99999 * 23 21 19 25 25 H 1.48500 * 109.46736 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.46913 * 299.99691 * 23 21 19 27 27 C 1.47959 * 90.76254 * 24.68718 * 14 13 12 28 28 H 1.09001 * 109.46624 * 300.00007 * 1 2 3 29 29 H 1.09000 * 109.47143 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47053 * 59.99440 * 1 2 3 31 31 H 1.09001 * 109.46624 * 239.99993 * 2 1 3 32 32 H 1.09001 * 109.46878 * 60.00474 * 3 2 1 33 33 H 1.08997 * 109.46868 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47043 * 300.00627 * 3 2 1 35 35 H 1.08010 * 125.55959 * 359.96280 * 5 4 2 36 36 H 1.07998 * 126.07002 * 180.02562 * 6 5 4 37 37 H 1.08004 * 126.45463 * 179.97438 * 7 6 5 38 38 H 0.97002 * 119.99863 * 5.09964 * 11 9 8 39 39 H 1.09001 * 112.94259 * 23.42619 * 12 11 9 40 40 H 1.08997 * 113.76096 * 336.23650 * 13 12 11 41 41 H 1.09002 * 113.76148 * 107.60466 * 13 12 11 42 42 H 1.09004 * 109.46756 * 190.64189 * 15 14 13 43 43 H 1.08993 * 109.47126 * 310.63883 * 15 14 13 44 44 H 0.97004 * 119.99843 * 0.02562 * 18 16 15 45 45 H 0.96998 * 119.99997 * 180.02562 * 22 21 19 46 46 H 1.09000 * 113.76399 * 220.99486 * 27 14 13 47 47 H 1.09005 * 113.85755 * 89.64305 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.8444 -0.2761 2.4747 6 6 2.4317 -1.1677 3.3082 7 6 2.9961 -2.1795 2.5252 8 6 2.7252 -1.8718 1.2089 9 6 3.1216 -2.6576 0.0355 10 8 2.9050 -2.2315 -1.0837 11 7 3.7257 -3.8515 0.1968 12 6 4.2222 -4.5848 -0.9702 13 6 3.3915 -5.8336 -1.3167 14 7 4.6869 -6.5080 -1.5544 15 6 4.6850 -7.8649 -0.9917 16 6 3.7788 -8.7472 -1.8110 17 8 3.1925 -8.2906 -2.7697 18 7 3.6206 -10.0438 -1.4792 19 6 2.7958 -10.8464 -2.2242 20 1 2.2731 -10.4396 -3.0773 21 6 2.6322 -12.1831 -1.8818 22 7 3.2678 -12.6779 -0.8435 23 14 1.5089 -13.2768 -2.8974 24 1 1.9976 -13.3227 -4.2989 25 1 1.5076 -14.6487 -2.3289 26 1 0.1291 -12.7285 -2.8719 27 6 5.3698 -5.5589 -0.6477 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.3227 0.6193 2.7793 36 1 2.4592 -1.1078 4.3862 37 1 3.5382 -3.0419 2.8843 38 1 3.8318 -4.2252 1.0857 39 1 4.4226 -3.9382 -1.8245 40 1 2.8341 -6.2386 -0.4720 41 1 2.7835 -5.7215 -2.2144 42 1 5.6979 -8.2673 -1.0104 43 1 4.3264 -7.8312 0.0370 44 1 4.0897 -10.4091 -0.7128 45 1 3.1539 -13.6111 -0.6046 46 1 6.3425 -5.2271 -1.0109 47 1 5.3922 -5.8819 0.3931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268485374.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:42 Heat of formation + Delta-G solvation = 14.987677 kcal Electronic energy + Delta-G solvation = -28141.510500 eV Core-core repulsion = 24133.425342 eV Total energy + Delta-G solvation = -4008.085158 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.74976 -40.31251 -38.72093 -37.59073 -35.80196 -34.15515 -33.77481 -31.28825 -30.30240 -30.11066 -28.94806 -27.71127 -26.01298 -25.54415 -24.00094 -22.89808 -22.20438 -20.63599 -20.35831 -19.28224 -19.19173 -17.90075 -17.86436 -16.56777 -16.15202 -16.00911 -15.57866 -15.27539 -15.04157 -14.74257 -14.58326 -14.36755 -14.25390 -13.98458 -13.81641 -13.32292 -13.06491 -12.92891 -12.91258 -12.64235 -12.56028 -12.50053 -12.40278 -12.07598 -11.73579 -11.69997 -11.53203 -11.42550 -11.25357 -11.04562 -10.59639 -10.43687 -10.21054 -10.03083 -9.49737 -9.21199 -9.00207 -8.71704 -8.43977 -8.25072 -7.96426 -6.41661 -3.82416 1.26366 2.36402 2.51206 3.10888 3.20437 3.20730 3.25971 3.30731 3.88868 4.01505 4.20239 4.28349 4.50226 4.54610 4.55637 4.70547 4.81186 4.87351 4.98158 5.03542 5.07640 5.11319 5.20588 5.26708 5.29059 5.30313 5.44954 5.50352 5.61501 5.65358 5.67224 5.72987 5.77489 5.81598 5.91989 6.01236 6.18828 6.27561 6.34660 6.53347 6.59976 6.78337 6.99200 7.13100 7.34037 7.55188 8.03056 8.05454 8.61318 9.17967 9.53777 10.05691 10.76024 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019240 B = 0.002023 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.948164 B =13837.992084 C =14013.362539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.102 3.898 3 C -0.158 4.158 4 N -0.399 5.399 5 C 0.017 3.983 6 C -0.209 4.209 7 C -0.141 4.141 8 C -0.052 4.052 9 C 0.591 3.409 10 O -0.547 6.547 11 N -0.708 5.708 12 C 0.118 3.882 13 C 0.011 3.989 14 N -0.449 5.449 15 C 0.013 3.987 16 C 0.443 3.557 17 O -0.578 6.578 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C -0.009 4.009 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.133 0.867 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.164 0.836 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.403 0.597 39 H 0.125 0.875 40 H 0.070 0.930 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.054 0.946 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.097 0.903 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.509 25.308 10.732 27.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.001 3.999 3 C -0.216 4.216 4 N -0.072 5.072 5 C -0.119 4.119 6 C -0.233 4.233 7 C -0.168 4.168 8 C -0.166 4.166 9 C 0.379 3.621 10 O -0.426 6.426 11 N -0.358 5.358 12 C 0.013 3.987 13 C -0.119 4.119 14 N -0.171 5.171 15 C -0.119 4.119 16 C 0.228 3.772 17 O -0.461 6.461 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.138 4.138 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.150 0.850 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.181 0.819 36 H 0.159 0.841 37 H 0.160 0.840 38 H 0.238 0.762 39 H 0.143 0.857 40 H 0.088 0.912 41 H 0.118 0.882 42 H 0.111 0.889 43 H 0.072 0.928 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.115 0.885 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.094 25.766 8.322 27.077 hybrid contribution -0.477 -1.172 1.548 1.999 sum -0.383 24.594 9.871 26.504 Atomic orbital electron populations 1.22153 0.93459 1.03232 1.02898 1.22012 0.95419 0.94255 0.88178 1.22134 1.02162 0.94308 1.03004 1.44207 1.39412 1.17083 1.06532 1.21901 1.05529 1.01780 0.82709 1.20796 1.06141 0.97079 0.99278 1.21340 1.03862 1.00810 0.90767 1.20058 1.09173 0.92597 0.94741 1.17047 0.77125 0.80768 0.87120 1.90731 1.55580 1.70604 1.25704 1.45722 1.59764 1.19676 1.10664 1.23169 0.94296 0.92158 0.89100 1.24311 0.93729 0.91697 1.02187 1.68390 1.08160 0.99798 1.40801 1.22452 1.01393 0.91372 0.96707 1.19669 0.86516 0.83247 0.87793 1.90535 1.51224 1.74146 1.30230 1.41853 1.41897 1.07691 1.28655 1.19650 1.21832 0.90719 1.10640 0.87990 1.25260 0.98279 0.97437 0.96972 1.69602 1.42776 1.15575 1.26422 0.85916 0.80211 0.78453 0.79642 1.19870 1.20974 1.19924 1.24450 0.99098 0.93207 0.97087 0.92113 0.91712 0.90475 0.84966 0.92058 0.91769 0.90430 0.81867 0.84133 0.83984 0.76223 0.85744 0.91224 0.88181 0.88948 0.92766 0.77502 0.91830 0.88476 0.90923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.30 37.16 0.35 -0.85 16 2 C 0.10 0.92 3.48 -67.93 -0.24 0.68 16 3 C -0.16 -1.05 9.16 37.16 0.34 -0.71 16 4 N -0.40 -3.99 2.64 -105.80 -0.28 -4.27 16 5 C 0.02 0.14 10.33 -16.92 -0.17 -0.04 16 6 C -0.21 -1.77 10.81 -39.98 -0.43 -2.20 16 7 C -0.14 -1.32 10.35 -39.12 -0.40 -1.72 16 8 C -0.05 -0.59 6.89 -81.98 -0.56 -1.15 16 9 C 0.59 7.57 7.77 -12.85 -0.10 7.47 16 10 O -0.55 -8.55 14.01 5.19 0.07 -8.48 16 11 N -0.71 -7.73 5.34 -56.24 -0.30 -8.03 16 12 C 0.12 1.49 4.40 -69.61 -0.31 1.19 16 13 C 0.01 0.17 6.56 -2.76 -0.02 0.15 16 14 N -0.45 -7.40 5.95 -239.86 -1.43 -8.83 16 15 C 0.01 0.23 5.31 -4.98 -0.03 0.20 16 16 C 0.44 10.54 7.59 -10.99 -0.08 10.45 16 17 O -0.58 -15.88 15.13 5.54 0.08 -15.80 16 18 N -0.56 -14.37 5.29 -10.96 -0.06 -14.42 16 19 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 20 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.58 13.05 55.50 0.72 -23.85 16 23 Si 0.93 21.22 29.55 -169.99 -5.02 16.19 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 C -0.01 -0.10 7.73 -2.76 -0.02 -0.12 16 28 H 0.06 0.38 8.01 -51.93 -0.42 -0.04 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.13 1.53 5.34 -51.93 -0.28 1.25 16 32 H 0.06 0.33 7.71 -51.93 -0.40 -0.07 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.16 0.89 7.91 -52.48 -0.42 0.47 16 36 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.14 1.00 7.49 -52.48 -0.39 0.61 16 38 H 0.40 3.38 7.68 -40.82 -0.31 3.07 16 39 H 0.12 1.74 7.52 -51.93 -0.39 1.35 16 40 H 0.07 1.10 7.78 -51.93 -0.40 0.70 16 41 H 0.10 1.87 8.09 -51.93 -0.42 1.45 16 42 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 43 H 0.05 0.83 7.69 -51.93 -0.40 0.43 16 44 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 45 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.07 0.70 7.77 -51.93 -0.40 0.29 16 LS Contribution 390.38 15.07 5.88 5.88 Total: -1.00 -34.16 390.38 -9.27 -43.43 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -7.03 Total: 12.86 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -1.92 Total: 5.32 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: -1.34 Total: -59.41 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: 0.16 Total: -24.28 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.16 -9.27 -43.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268485374.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.421 kcal (2) G-P(sol) polarization free energy of solvation -34.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds