Wall clock time and date at job start Tue Mar 31 2020 19:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47067 * 2 1 4 4 N 1.46501 * 109.46898 * 119.99974 * 2 1 3 5 5 C 1.35526 * 125.68399 * 294.92949 * 4 2 1 6 6 C 1.35448 * 108.87629 * 179.97438 * 5 4 2 7 7 C 1.39834 * 107.86300 * 0.02562 * 6 5 4 8 8 C 1.37658 * 125.67411 * 114.62584 * 4 2 1 9 9 C 1.46678 * 126.23178 * 0.02562 * 8 4 2 10 10 O 1.21698 * 120.00303 * 5.04238 * 9 8 4 11 11 N 1.34778 * 119.99688 * 185.04700 * 9 8 4 12 12 C 1.46497 * 119.99753 * 185.11368 * 11 9 8 13 13 C 1.53938 * 113.73132 * 251.72208 * 12 11 9 14 14 N 1.47964 * 86.18231 * 221.92274 * 13 12 11 15 15 C 1.46897 * 111.00042 * 137.58296 * 14 13 12 16 16 C 1.50699 * 109.47337 * 70.64148 * 15 14 13 17 17 O 1.21297 * 119.99616 * 0.02562 * 16 15 14 18 18 N 1.34770 * 120.00460 * 179.97438 * 16 15 14 19 19 C 1.37091 * 120.00333 * 179.97438 * 18 16 15 20 20 H 1.07998 * 119.99917 * 0.02562 * 19 18 16 21 21 C 1.38958 * 120.00040 * 180.02562 * 19 18 16 22 22 N 1.31409 * 120.00016 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99913 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46937 * 59.99999 * 23 21 19 25 25 H 1.48500 * 109.46736 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.46913 * 299.99691 * 23 21 19 27 27 C 1.47959 * 90.76254 * 24.68718 * 14 13 12 28 28 H 1.09001 * 109.46624 * 300.00007 * 1 2 3 29 29 H 1.09000 * 109.47143 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47053 * 59.99440 * 1 2 3 31 31 H 1.09001 * 109.46624 * 239.99993 * 2 1 3 32 32 H 1.09001 * 109.46878 * 60.00474 * 3 2 1 33 33 H 1.08997 * 109.46868 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47043 * 300.00627 * 3 2 1 35 35 H 1.08010 * 125.55959 * 359.96280 * 5 4 2 36 36 H 1.07998 * 126.07002 * 180.02562 * 6 5 4 37 37 H 1.08004 * 126.45463 * 179.97438 * 7 6 5 38 38 H 0.97002 * 119.99863 * 5.09964 * 11 9 8 39 39 H 1.09001 * 112.94259 * 23.42619 * 12 11 9 40 40 H 1.08997 * 113.76096 * 336.23650 * 13 12 11 41 41 H 1.09002 * 113.76148 * 107.60466 * 13 12 11 42 42 H 1.09004 * 109.46756 * 190.64189 * 15 14 13 43 43 H 1.08993 * 109.47126 * 310.63883 * 15 14 13 44 44 H 0.97004 * 119.99843 * 0.02562 * 18 16 15 45 45 H 0.96998 * 119.99997 * 180.02562 * 22 21 19 46 46 H 1.09000 * 113.76399 * 220.99486 * 27 14 13 47 47 H 1.09005 * 113.85755 * 89.64305 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.8444 -0.2761 2.4747 6 6 2.4317 -1.1677 3.3082 7 6 2.9961 -2.1795 2.5252 8 6 2.7252 -1.8718 1.2089 9 6 3.1216 -2.6576 0.0355 10 8 2.9050 -2.2315 -1.0837 11 7 3.7257 -3.8515 0.1968 12 6 4.2222 -4.5848 -0.9702 13 6 3.3915 -5.8336 -1.3167 14 7 4.6869 -6.5080 -1.5544 15 6 4.6850 -7.8649 -0.9917 16 6 3.7788 -8.7472 -1.8110 17 8 3.1925 -8.2906 -2.7697 18 7 3.6206 -10.0438 -1.4792 19 6 2.7958 -10.8464 -2.2242 20 1 2.2731 -10.4396 -3.0773 21 6 2.6322 -12.1831 -1.8818 22 7 3.2678 -12.6779 -0.8435 23 14 1.5089 -13.2768 -2.8974 24 1 1.9976 -13.3227 -4.2989 25 1 1.5076 -14.6487 -2.3289 26 1 0.1291 -12.7285 -2.8719 27 6 5.3698 -5.5589 -0.6477 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.3227 0.6193 2.7793 36 1 2.4592 -1.1078 4.3862 37 1 3.5382 -3.0419 2.8843 38 1 3.8318 -4.2252 1.0857 39 1 4.4226 -3.9382 -1.8245 40 1 2.8341 -6.2386 -0.4720 41 1 2.7835 -5.7215 -2.2144 42 1 5.6979 -8.2673 -1.0104 43 1 4.3264 -7.8312 0.0370 44 1 4.0897 -10.4091 -0.7128 45 1 3.1539 -13.6111 -0.6046 46 1 6.3425 -5.2271 -1.0109 47 1 5.3922 -5.8819 0.3931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268485374.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:41 Heat of formation + Delta-G solvation = -11.164278 kcal Electronic energy + Delta-G solvation = -28142.644534 eV Core-core repulsion = 24133.425342 eV Total energy + Delta-G solvation = -4009.219191 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.47874 -41.48302 -40.02994 -39.19036 -36.46941 -35.97918 -35.03298 -33.31358 -31.50264 -30.75919 -29.92117 -28.26658 -27.32537 -27.10324 -25.38385 -23.78314 -23.04053 -21.51889 -21.33589 -20.97536 -20.10729 -19.90573 -18.61625 -17.90867 -17.63493 -16.96521 -16.61328 -16.55105 -16.38912 -15.87002 -15.73220 -15.67696 -15.26391 -15.21725 -14.87686 -14.81165 -14.26886 -13.73983 -13.66468 -13.65343 -13.52961 -13.51556 -13.18677 -13.15866 -13.10751 -12.97762 -12.86645 -12.46965 -12.40202 -12.32103 -12.14486 -12.10658 -11.81865 -11.51393 -10.99746 -10.36246 -10.24645 -10.03098 -9.76758 -9.67047 -9.15032 -8.48087 -5.96662 0.46792 1.38068 1.39990 1.50792 1.62004 1.84776 2.03688 2.23304 2.30275 2.34742 2.84677 3.17947 3.21564 3.54452 3.65709 3.71220 3.78220 3.94375 4.09404 4.14230 4.18644 4.26775 4.35318 4.42780 4.43203 4.48240 4.53469 4.58546 4.65844 4.68879 4.73906 4.81517 4.90718 4.96399 5.02893 5.15287 5.22697 5.31385 5.33000 5.37903 5.40137 5.84326 5.85802 6.03979 6.07875 6.36036 6.48440 6.59046 7.11418 7.12254 7.54477 8.11075 8.68993 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019240 B = 0.002023 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.948164 B =13837.992084 C =14013.362539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.097 3.903 3 C -0.151 4.151 4 N -0.408 5.408 5 C 0.024 3.976 6 C -0.220 4.220 7 C -0.133 4.133 8 C -0.091 4.091 9 C 0.585 3.415 10 O -0.586 6.586 11 N -0.694 5.694 12 C 0.133 3.867 13 C 0.005 3.995 14 N -0.478 5.478 15 C 0.026 3.974 16 C 0.437 3.563 17 O -0.622 6.622 18 N -0.572 5.572 19 C -0.335 4.335 20 H 0.075 0.925 21 C -0.012 4.012 22 N -0.918 5.918 23 Si 0.991 3.009 24 H -0.273 1.273 25 H -0.268 1.268 26 H -0.273 1.273 27 C 0.011 3.989 28 H 0.079 0.921 29 H 0.041 0.959 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.089 0.911 35 H 0.194 0.806 36 H 0.164 0.836 37 H 0.163 0.837 38 H 0.417 0.583 39 H 0.108 0.892 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.116 0.884 43 H 0.085 0.915 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.117 0.883 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.041 26.218 13.430 29.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.004 4.004 3 C -0.208 4.208 4 N -0.081 5.081 5 C -0.112 4.112 6 C -0.243 4.243 7 C -0.160 4.160 8 C -0.204 4.204 9 C 0.376 3.624 10 O -0.469 6.469 11 N -0.346 5.346 12 C 0.027 3.973 13 C -0.125 4.125 14 N -0.202 5.202 15 C -0.106 4.106 16 C 0.224 3.776 17 O -0.508 6.508 18 N -0.210 5.210 19 C -0.464 4.464 20 H 0.093 0.907 21 C -0.212 4.212 22 N -0.559 5.559 23 Si 0.815 3.185 24 H -0.199 1.199 25 H -0.192 1.192 26 H -0.198 1.198 27 C -0.118 4.118 28 H 0.098 0.902 29 H 0.060 0.940 30 H 0.108 0.892 31 H 0.117 0.883 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.108 0.892 35 H 0.211 0.789 36 H 0.181 0.819 37 H 0.181 0.819 38 H 0.255 0.745 39 H 0.126 0.874 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.134 0.866 43 H 0.102 0.898 44 H 0.231 0.769 45 H 0.088 0.912 46 H 0.135 0.865 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.659 26.661 11.072 28.876 hybrid contribution -0.660 -1.378 0.740 1.698 sum -0.001 25.283 11.813 27.906 Atomic orbital electron populations 1.22115 0.92377 1.02165 1.04457 1.22005 0.96254 0.95100 0.87014 1.22089 1.01252 0.92880 1.04584 1.44387 1.39422 1.16922 1.07356 1.22507 1.04450 1.02410 0.81839 1.21167 1.05949 0.96730 1.00461 1.21708 1.02904 1.01425 0.89954 1.20021 1.11785 0.93882 0.94728 1.17422 0.76620 0.81113 0.87269 1.90718 1.57242 1.71601 1.27338 1.45526 1.59161 1.19058 1.10809 1.22797 0.93993 0.91076 0.89425 1.24233 0.93780 0.94060 1.00458 1.68351 1.08723 0.99941 1.43168 1.22365 1.00812 0.90750 0.96632 1.20830 0.86114 0.83130 0.87481 1.90509 1.52992 1.74921 1.32392 1.41914 1.41998 1.08330 1.28766 1.19586 1.23618 0.92027 1.11198 0.90662 1.26015 0.99257 0.98001 0.97901 1.69652 1.43118 1.16168 1.26941 0.85016 0.78186 0.77176 0.78123 1.19851 1.19231 1.19831 1.24509 0.98817 0.90336 0.98089 0.90205 0.94020 0.89237 0.88261 0.90086 0.93083 0.89208 0.78870 0.81856 0.81920 0.74454 0.87446 0.91054 0.92292 0.86613 0.89766 0.76863 0.91228 0.86510 0.87601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.30 71.98 0.67 -1.55 16 2 C 0.10 1.75 3.48 44.99 0.16 1.91 16 3 C -0.15 -1.83 9.16 71.98 0.66 -1.17 16 4 N -0.41 -7.83 2.64 -488.65 -1.29 -9.12 16 5 C 0.02 0.34 10.33 83.48 0.86 1.20 16 6 C -0.22 -3.10 10.81 22.01 0.24 -2.86 16 7 C -0.13 -2.22 10.35 22.57 0.23 -1.98 16 8 C -0.09 -2.02 6.89 40.35 0.28 -1.74 16 9 C 0.59 15.41 7.77 86.45 0.67 16.08 16 10 O -0.59 -19.65 14.01 -4.34 -0.06 -19.71 16 11 N -0.69 -14.78 5.34 -450.07 -2.40 -17.18 16 12 C 0.13 3.36 4.40 46.56 0.20 3.57 16 13 C 0.00 0.16 6.56 86.41 0.57 0.73 16 14 N -0.48 -15.47 5.95 -912.79 -5.43 -20.89 16 15 C 0.03 0.88 5.31 85.56 0.45 1.33 16 16 C 0.44 21.17 7.59 87.66 0.67 21.83 16 17 O -0.62 -35.69 15.13 -3.08 -0.05 -35.74 16 18 N -0.57 -29.65 5.29 -306.99 -1.62 -31.27 16 19 C -0.33 -19.31 9.68 84.04 0.81 -18.49 16 20 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 21 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 22 N -0.92 -49.54 13.05 21.67 0.28 -49.26 16 23 Si 0.99 43.49 29.55 68.60 2.03 45.51 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 26 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 27 C 0.01 0.23 7.73 86.41 0.67 0.90 16 28 H 0.08 0.83 8.01 -2.39 -0.02 0.81 16 29 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.10 2.49 5.34 -2.39 -0.01 2.48 16 32 H 0.08 0.66 7.71 -2.39 -0.02 0.64 16 33 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 34 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.19 1.37 7.91 -2.91 -0.02 1.34 16 36 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16 37 H 0.16 1.83 7.49 -2.91 -0.02 1.81 16 38 H 0.42 6.19 7.68 -92.71 -0.71 5.48 16 39 H 0.11 3.13 7.52 -2.39 -0.02 3.12 16 40 H 0.07 2.28 7.78 -2.39 -0.02 2.26 16 41 H 0.06 2.40 8.09 -2.39 -0.02 2.38 16 42 H 0.12 3.39 8.14 -2.38 -0.02 3.37 16 43 H 0.08 2.35 7.69 -2.39 -0.02 2.33 16 44 H 0.40 19.27 7.90 -92.70 -0.73 18.54 16 45 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 46 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.11 1.55 7.77 -2.38 -0.02 1.53 16 Total: -1.00 -78.49 390.38 -1.37 -79.86 By element: Atomic # 1 Polarization: 38.67 SS G_CDS: -0.44 Total: 38.22 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: 7.61 Total: 19.58 kcal Atomic # 7 Polarization: -117.27 SS G_CDS: -10.46 Total: -127.73 kcal Atomic # 8 Polarization: -55.34 SS G_CDS: -0.11 Total: -55.45 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -78.49 -1.37 -79.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268485374.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.695 kcal (2) G-P(sol) polarization free energy of solvation -78.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds