Wall clock time and date at job start Tue Mar 31 2020 18:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.47204 * 2 1 4 4 C 1.53006 * 109.46775 * 239.99961 * 2 1 3 5 5 N 1.46498 * 109.46705 * 120.00486 * 2 1 3 6 6 C 1.34777 * 120.00607 * 59.99923 * 5 2 1 7 7 O 1.21685 * 119.99322 * 5.20297 * 6 5 2 8 8 C 1.46765 * 119.99949 * 185.20196 * 6 5 2 9 9 C 1.36820 * 126.88008 * 186.12240 * 8 6 5 10 10 N 1.33475 * 107.82997 * 180.15240 * 9 8 6 11 11 C 1.30444 * 109.63418 * 0.12258 * 10 9 8 12 12 N 1.34886 * 109.14573 * 359.66570 * 11 10 9 13 13 C 1.46413 * 125.37930 * 180.56617 * 12 11 10 14 14 C 1.53281 * 109.24740 * 341.34856 * 13 12 11 15 15 N 1.47097 * 109.09221 * 45.68281 * 14 13 12 16 16 C 1.34775 * 120.98214 * 116.51393 * 15 14 13 17 17 O 1.21287 * 119.99840 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.99762 * 180.02562 * 16 15 14 19 19 C 1.50701 * 109.46882 * 179.97438 * 18 16 15 20 20 H 1.08004 * 120.00140 * 359.97438 * 19 18 16 21 21 C 1.37881 * 120.00063 * 179.72097 * 19 18 16 22 22 N 1.31512 * 119.99856 * 0.27653 * 21 19 18 23 23 Si 1.86797 * 120.00081 * 180.27158 * 21 19 18 24 24 H 1.48506 * 109.47043 * 90.00291 * 23 21 19 25 25 H 1.48501 * 109.47165 * 210.00091 * 23 21 19 26 26 H 1.48495 * 109.47400 * 330.00509 * 23 21 19 27 27 C 1.47425 * 118.03320 * 296.78142 * 15 14 13 28 28 H 1.08997 * 109.46603 * 299.99972 * 1 2 3 29 29 H 1.08997 * 109.46537 * 59.99461 * 1 2 3 30 30 H 1.08993 * 109.47163 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47092 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47191 * 300.00165 * 3 2 1 33 33 H 1.09005 * 109.46723 * 60.00576 * 3 2 1 34 34 H 1.08993 * 109.47456 * 300.00042 * 4 2 1 35 35 H 1.09004 * 109.46919 * 60.00611 * 4 2 1 36 36 H 1.09001 * 109.46747 * 180.02562 * 4 2 1 37 37 H 0.97009 * 119.99714 * 239.99609 * 5 2 1 38 38 H 1.08000 * 126.09006 * 0.18909 * 9 8 6 39 39 H 1.08998 * 109.50869 * 221.41347 * 13 12 11 40 40 H 1.09003 * 109.54157 * 101.29853 * 13 12 11 41 41 H 1.08995 * 109.53346 * 285.79544 * 14 13 12 42 42 H 1.08998 * 109.53086 * 165.56103 * 14 13 12 43 43 H 1.08999 * 109.47661 * 60.00055 * 18 16 15 44 44 H 1.08993 * 109.46924 * 299.99181 * 18 16 15 45 45 H 0.97003 * 119.99779 * 179.97438 * 22 21 19 46 46 H 1.09003 * 109.92937 * 162.33800 * 27 15 14 47 47 H 1.09001 * 109.93377 * 283.54569 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0183 -0.6907 1.1961 6 6 1.6927 -1.9811 1.4094 7 8 1.0735 -2.5999 0.5642 8 6 2.0851 -2.6397 2.6609 9 6 1.9336 -3.9627 2.9751 10 7 2.4155 -4.1482 4.2059 11 6 2.8570 -3.0156 4.6791 12 7 2.6788 -2.0502 3.7541 13 6 3.0599 -0.6453 3.9109 14 6 3.2500 -0.3365 5.4002 15 7 4.0434 -1.4107 6.0169 16 6 5.2578 -1.1605 6.5453 17 8 5.7118 -0.0362 6.5162 18 6 6.0519 -2.2780 7.1711 19 6 7.3628 -1.7377 7.6817 20 1 7.5976 -0.6901 7.5643 21 6 8.2603 -2.5799 8.3033 22 7 7.9746 -3.8557 8.4459 23 14 9.8820 -1.9088 8.9430 24 1 9.7117 -1.4585 10.3478 25 1 10.9152 -2.9739 8.8863 26 1 10.3081 -0.7605 8.1034 27 6 3.4735 -2.7702 6.0345 28 1 -0.3632 0.5138 0.8900 29 1 -0.3632 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9562 0.8901 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1393 36 1 3.1300 -0.7217 -1.2491 37 1 2.5761 -0.2193 1.8347 38 1 1.5015 -4.7219 2.3401 39 1 2.2750 -0.0076 3.5042 40 1 3.9927 -0.4589 3.3786 41 1 2.2767 -0.2767 5.8871 42 1 3.7735 0.6131 5.5116 43 1 6.2431 -3.0497 6.4255 44 1 5.4872 -2.7051 7.9997 45 1 8.6061 -4.4482 8.8829 46 1 4.2607 -3.5006 6.2219 47 1 2.7073 -2.8421 6.8065 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269023610.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:51 Heat of formation + Delta-G solvation = -3.483339 kcal Electronic energy + Delta-G solvation = -29456.920917 eV Core-core repulsion = 25448.034797 eV Total energy + Delta-G solvation = -4008.886121 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.62910 -40.14827 -39.22353 -36.83796 -36.10331 -34.34634 -33.06974 -32.20205 -30.48886 -30.17806 -28.69645 -27.79101 -27.56330 -26.24825 -24.68496 -23.58339 -22.85815 -20.91440 -20.26372 -19.93463 -18.70451 -17.84394 -16.80761 -16.72074 -16.32855 -16.09338 -15.80510 -15.32456 -15.28112 -14.84518 -14.54292 -14.47138 -14.26959 -14.13104 -13.91957 -13.60087 -13.16813 -13.00456 -12.81408 -12.56774 -12.51104 -12.42960 -12.26203 -12.16804 -11.95910 -11.80679 -11.51591 -11.42966 -11.32886 -10.85497 -10.73242 -10.40013 -10.05967 -9.93243 -9.88899 -9.48013 -9.36173 -8.98579 -8.75440 -8.51633 -8.47705 -6.14262 -4.15301 1.13918 2.26019 2.67465 2.76538 3.08239 3.22229 3.29342 3.32356 3.35680 3.42176 4.07249 4.17767 4.20547 4.39944 4.46497 4.53135 4.60386 4.63322 4.68462 5.01044 5.13632 5.21107 5.23826 5.24780 5.29849 5.34409 5.36666 5.41626 5.48430 5.50801 5.59683 5.61539 5.64581 5.80577 5.89928 5.98268 6.06472 6.22150 6.40049 6.53418 6.80576 7.00159 7.13827 7.15625 7.56826 7.82549 7.87312 7.91383 8.16201 8.83372 8.95045 9.50287 10.97714 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018101 B = 0.002742 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.473334 B =10208.183334 C =10904.754599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.168 3.832 3 C -0.158 4.158 4 C -0.166 4.166 5 N -0.731 5.731 6 C 0.605 3.395 7 O -0.523 6.523 8 C -0.102 4.102 9 C 0.073 3.927 10 N -0.485 5.485 11 C 0.237 3.763 12 N -0.437 5.437 13 C 0.076 3.924 14 C 0.099 3.901 15 N -0.638 5.638 16 C 0.526 3.474 17 O -0.533 6.533 18 C 0.006 3.994 19 C -0.514 4.514 20 H 0.075 0.925 21 C 0.057 3.943 22 N -0.896 5.896 23 Si 0.902 3.098 24 H -0.279 1.279 25 H -0.286 1.286 26 H -0.272 1.272 27 C 0.195 3.805 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.395 0.605 38 H 0.185 0.815 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.118 0.882 43 H 0.051 0.949 44 H 0.053 0.947 45 H 0.263 0.737 46 H 0.131 0.869 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.837 7.699 -14.717 22.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.083 3.917 3 C -0.215 4.215 4 C -0.224 4.224 5 N -0.386 5.386 6 C 0.392 3.608 7 O -0.400 6.400 8 C -0.217 4.217 9 C -0.082 4.082 10 N -0.203 5.203 11 C -0.026 4.026 12 N -0.121 5.121 13 C -0.048 4.048 14 C -0.025 4.025 15 N -0.376 5.376 16 C 0.319 3.681 17 O -0.407 6.407 18 C -0.033 4.033 19 C -0.553 4.553 20 H 0.093 0.907 21 C -0.144 4.144 22 N -0.535 5.535 23 Si 0.729 3.271 24 H -0.205 1.205 25 H -0.212 1.212 26 H -0.197 1.197 27 C 0.070 3.930 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.233 0.767 38 H 0.202 0.798 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.097 0.903 42 H 0.136 0.864 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.148 0.852 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -15.863 7.211 -14.847 22.892 hybrid contribution 1.039 1.224 0.099 1.609 sum -14.824 8.435 -14.748 22.548 Atomic orbital electron populations 1.22205 0.94002 1.03952 1.01874 1.20393 0.94516 0.91805 0.85036 1.22116 1.01842 0.94331 1.03229 1.22274 1.01096 1.03066 0.95957 1.46479 1.54162 1.12110 1.25857 1.16782 0.78665 0.81049 0.84300 1.90769 1.40752 1.64380 1.44065 1.21013 1.13686 0.95792 0.91164 1.22682 0.99590 0.93010 0.92882 1.70033 1.16576 1.23451 1.10262 1.23775 1.00848 0.83610 0.94352 1.45299 1.44228 1.09565 1.12971 1.22654 1.01936 0.79191 1.00995 1.21722 0.97458 0.94570 0.88796 1.48644 1.19531 1.07679 1.61729 1.22242 0.78274 0.92224 0.75379 1.90551 1.68122 1.24809 1.57234 1.19318 0.95301 0.91772 0.96863 1.21109 1.00223 0.96434 1.37485 0.90704 1.24999 0.98793 0.94782 0.95848 1.69943 1.36626 1.03589 1.43392 0.86423 0.82740 0.78621 0.79274 1.20531 1.21189 1.19703 1.20285 0.99364 0.85358 0.87992 0.92695 0.91605 0.90470 0.91777 0.90507 0.91894 0.89819 0.91850 0.92682 0.76737 0.79830 0.88350 0.88729 0.90344 0.86366 0.93096 0.92911 0.92695 0.85163 0.88230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 8.40 37.16 0.31 -1.01 16 2 C 0.17 1.36 1.06 -131.81 -0.14 1.22 16 3 C -0.16 -0.91 8.59 37.16 0.32 -0.59 16 4 C -0.17 -1.46 8.40 37.16 0.31 -1.15 16 5 N -0.73 -6.86 4.90 -48.87 -0.24 -7.10 16 6 C 0.60 7.43 7.19 -12.81 -0.09 7.34 16 7 O -0.52 -7.46 13.15 5.20 0.07 -7.39 16 8 C -0.10 -1.34 6.92 -82.32 -0.57 -1.91 16 9 C 0.07 1.02 11.67 -17.35 -0.20 0.82 16 10 N -0.48 -7.45 11.20 -10.44 -0.12 -7.57 16 11 C 0.24 3.40 7.75 -155.50 -1.20 2.19 16 12 N -0.44 -5.49 3.15 -109.85 -0.35 -5.84 16 13 C 0.08 0.75 5.42 -3.94 -0.02 0.72 16 14 C 0.10 1.13 6.44 -3.57 -0.02 1.10 16 15 N -0.64 -9.76 2.97 -173.53 -0.52 -10.28 16 16 C 0.53 10.76 7.71 -10.99 -0.08 10.68 16 17 O -0.53 -12.36 14.90 5.55 0.08 -12.28 16 18 C 0.01 0.15 3.89 -29.03 -0.11 0.04 16 19 C -0.51 -14.15 8.92 -34.44 -0.31 -14.46 16 20 H 0.07 2.14 6.75 -52.48 -0.35 1.79 16 21 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 22 N -0.90 -25.35 13.29 55.43 0.74 -24.61 16 23 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 27 C 0.19 2.71 6.63 -4.58 -0.03 2.68 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.81 6.35 -51.93 -0.33 0.48 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.94 5.99 -51.93 -0.31 0.63 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.40 3.16 4.71 -40.82 -0.19 2.97 16 38 H 0.18 2.23 8.06 -52.49 -0.42 1.80 16 39 H 0.10 0.68 6.63 -51.93 -0.34 0.34 16 40 H 0.09 0.94 7.99 -51.93 -0.41 0.52 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.12 1.41 7.02 -51.93 -0.36 1.04 16 43 H 0.05 1.23 7.55 -51.93 -0.39 0.84 16 44 H 0.05 1.25 8.13 -51.93 -0.42 0.82 16 45 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 46 H 0.13 1.98 6.26 -51.93 -0.32 1.66 16 47 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 375.87 15.07 5.66 5.66 Total: -1.00 -33.27 375.87 -8.44 -41.71 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -6.81 Total: 2.13 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: -1.94 Total: 9.17 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: -0.48 Total: -55.39 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: 0.15 Total: -19.67 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.27 -8.44 -41.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269023610.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.229 kcal (2) G-P(sol) polarization free energy of solvation -33.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds