Wall clock time and date at job start Tue Mar 31 2020 18:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.47204 * 2 1 4 4 C 1.53006 * 109.46775 * 239.99961 * 2 1 3 5 5 N 1.46498 * 109.46705 * 120.00486 * 2 1 3 6 6 C 1.34777 * 120.00607 * 59.99923 * 5 2 1 7 7 O 1.21685 * 119.99322 * 5.20297 * 6 5 2 8 8 C 1.46765 * 119.99949 * 185.20196 * 6 5 2 9 9 C 1.36820 * 126.88008 * 186.12240 * 8 6 5 10 10 N 1.33475 * 107.82997 * 180.15240 * 9 8 6 11 11 C 1.30444 * 109.63418 * 0.12258 * 10 9 8 12 12 N 1.34886 * 109.14573 * 359.66570 * 11 10 9 13 13 C 1.46413 * 125.37930 * 180.56617 * 12 11 10 14 14 C 1.53281 * 109.24740 * 341.34856 * 13 12 11 15 15 N 1.47097 * 109.09221 * 45.68281 * 14 13 12 16 16 C 1.34775 * 120.98214 * 116.51393 * 15 14 13 17 17 O 1.21287 * 119.99840 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.99762 * 180.02562 * 16 15 14 19 19 C 1.50701 * 109.46882 * 179.97438 * 18 16 15 20 20 H 1.08004 * 120.00140 * 359.97438 * 19 18 16 21 21 C 1.37881 * 120.00063 * 179.72097 * 19 18 16 22 22 N 1.31512 * 119.99856 * 0.27653 * 21 19 18 23 23 Si 1.86797 * 120.00081 * 180.27158 * 21 19 18 24 24 H 1.48506 * 109.47043 * 90.00291 * 23 21 19 25 25 H 1.48501 * 109.47165 * 210.00091 * 23 21 19 26 26 H 1.48495 * 109.47400 * 330.00509 * 23 21 19 27 27 C 1.47425 * 118.03320 * 296.78142 * 15 14 13 28 28 H 1.08997 * 109.46603 * 299.99972 * 1 2 3 29 29 H 1.08997 * 109.46537 * 59.99461 * 1 2 3 30 30 H 1.08993 * 109.47163 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47092 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47191 * 300.00165 * 3 2 1 33 33 H 1.09005 * 109.46723 * 60.00576 * 3 2 1 34 34 H 1.08993 * 109.47456 * 300.00042 * 4 2 1 35 35 H 1.09004 * 109.46919 * 60.00611 * 4 2 1 36 36 H 1.09001 * 109.46747 * 180.02562 * 4 2 1 37 37 H 0.97009 * 119.99714 * 239.99609 * 5 2 1 38 38 H 1.08000 * 126.09006 * 0.18909 * 9 8 6 39 39 H 1.08998 * 109.50869 * 221.41347 * 13 12 11 40 40 H 1.09003 * 109.54157 * 101.29853 * 13 12 11 41 41 H 1.08995 * 109.53346 * 285.79544 * 14 13 12 42 42 H 1.08998 * 109.53086 * 165.56103 * 14 13 12 43 43 H 1.08999 * 109.47661 * 60.00055 * 18 16 15 44 44 H 1.08993 * 109.46924 * 299.99181 * 18 16 15 45 45 H 0.97003 * 119.99779 * 179.97438 * 22 21 19 46 46 H 1.09003 * 109.92937 * 162.33800 * 27 15 14 47 47 H 1.09001 * 109.93377 * 283.54569 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0183 -0.6907 1.1961 6 6 1.6927 -1.9811 1.4094 7 8 1.0735 -2.5999 0.5642 8 6 2.0851 -2.6397 2.6609 9 6 1.9336 -3.9627 2.9751 10 7 2.4155 -4.1482 4.2059 11 6 2.8570 -3.0156 4.6791 12 7 2.6788 -2.0502 3.7541 13 6 3.0599 -0.6453 3.9109 14 6 3.2500 -0.3365 5.4002 15 7 4.0434 -1.4107 6.0169 16 6 5.2578 -1.1605 6.5453 17 8 5.7118 -0.0362 6.5162 18 6 6.0519 -2.2780 7.1711 19 6 7.3628 -1.7377 7.6817 20 1 7.5976 -0.6901 7.5643 21 6 8.2603 -2.5799 8.3033 22 7 7.9746 -3.8557 8.4459 23 14 9.8820 -1.9088 8.9430 24 1 9.7117 -1.4585 10.3478 25 1 10.9152 -2.9739 8.8863 26 1 10.3081 -0.7605 8.1034 27 6 3.4735 -2.7702 6.0345 28 1 -0.3632 0.5138 0.8900 29 1 -0.3632 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9562 0.8901 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1393 36 1 3.1300 -0.7217 -1.2491 37 1 2.5761 -0.2193 1.8347 38 1 1.5015 -4.7219 2.3401 39 1 2.2750 -0.0076 3.5042 40 1 3.9927 -0.4589 3.3786 41 1 2.2767 -0.2767 5.8871 42 1 3.7735 0.6131 5.5116 43 1 6.2431 -3.0497 6.4255 44 1 5.4872 -2.7051 7.9997 45 1 8.6061 -4.4482 8.8829 46 1 4.2607 -3.5006 6.2219 47 1 2.7073 -2.8421 6.8065 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269023610.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:50 Heat of formation + Delta-G solvation = -25.224297 kcal Electronic energy + Delta-G solvation = -29457.863676 eV Core-core repulsion = 25448.034797 eV Total energy + Delta-G solvation = -4009.828880 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.68163 -41.06759 -40.65843 -37.77137 -37.27076 -35.49361 -35.07934 -33.09971 -31.70074 -31.42249 -30.28430 -28.30477 -28.22458 -27.43583 -26.18031 -24.69861 -24.22711 -21.87837 -21.44241 -20.72865 -19.92974 -18.96855 -18.51723 -17.92478 -17.42203 -17.30497 -16.93318 -16.68892 -16.48209 -16.19156 -15.80437 -15.47045 -15.14720 -15.05121 -14.90673 -14.60581 -14.50786 -14.24216 -14.17656 -13.70573 -13.47882 -13.32363 -13.19089 -13.04970 -13.00852 -12.91540 -12.65619 -12.58486 -12.57959 -12.17392 -12.09437 -12.03487 -11.46707 -11.38916 -10.93054 -10.89397 -10.65384 -10.62015 -10.30612 -10.00647 -9.56365 -8.24540 -6.32175 0.10865 1.23214 1.41871 1.42332 1.54144 1.60407 1.68247 1.85949 1.99583 2.19730 2.42776 3.02899 3.11354 3.25222 3.33056 3.65260 3.75958 3.84664 3.95325 4.03256 4.07880 4.11996 4.23497 4.31275 4.48503 4.53909 4.63128 4.66624 4.67745 4.70989 4.81802 4.83683 4.92629 4.96754 5.01675 5.18806 5.22399 5.27461 5.30174 5.37121 5.42059 5.50217 5.72974 5.77828 5.95248 6.29163 6.32265 6.76329 6.80499 7.00241 7.23323 7.38337 8.87158 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018101 B = 0.002742 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.473334 B =10208.183334 C =10904.754599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.162 3.838 3 C -0.153 4.153 4 C -0.165 4.165 5 N -0.718 5.718 6 C 0.604 3.396 7 O -0.546 6.546 8 C -0.096 4.096 9 C 0.054 3.946 10 N -0.507 5.507 11 C 0.225 3.775 12 N -0.431 5.431 13 C 0.075 3.925 14 C 0.097 3.903 15 N -0.627 5.627 16 C 0.533 3.467 17 O -0.565 6.565 18 C 0.009 3.991 19 C -0.537 4.537 20 H 0.058 0.942 21 C 0.011 3.989 22 N -0.922 5.922 23 Si 0.961 3.039 24 H -0.271 1.271 25 H -0.278 1.278 26 H -0.273 1.273 27 C 0.197 3.803 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.051 0.949 37 H 0.403 0.597 38 H 0.194 0.806 39 H 0.136 0.864 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.118 0.882 43 H 0.039 0.961 44 H 0.048 0.952 45 H 0.267 0.733 46 H 0.112 0.888 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.584 9.805 -15.403 24.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.077 3.923 3 C -0.210 4.210 4 C -0.223 4.223 5 N -0.373 5.373 6 C 0.391 3.609 7 O -0.424 6.424 8 C -0.212 4.212 9 C -0.100 4.100 10 N -0.226 5.226 11 C -0.039 4.039 12 N -0.114 5.114 13 C -0.047 4.047 14 C -0.026 4.026 15 N -0.363 5.363 16 C 0.325 3.675 17 O -0.442 6.442 18 C -0.030 4.030 19 C -0.575 4.575 20 H 0.077 0.923 21 C -0.188 4.188 22 N -0.562 5.562 23 Si 0.786 3.214 24 H -0.196 1.196 25 H -0.203 1.203 26 H -0.197 1.197 27 C 0.073 3.927 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.242 0.758 38 H 0.211 0.789 39 H 0.154 0.846 40 H 0.116 0.884 41 H 0.126 0.874 42 H 0.136 0.864 43 H 0.057 0.943 44 H 0.066 0.934 45 H 0.076 0.924 46 H 0.130 0.870 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.644 9.338 -15.547 24.616 hybrid contribution 1.188 0.552 0.226 1.330 sum -15.456 9.889 -15.321 23.904 Atomic orbital electron populations 1.22167 0.93892 1.02483 1.03140 1.20607 0.94640 0.93058 0.83947 1.22105 1.01971 0.92349 1.04615 1.22247 1.00861 1.01793 0.97354 1.46456 1.53387 1.11067 1.26358 1.16733 0.78635 0.81871 0.83708 1.90774 1.41885 1.65136 1.44598 1.21175 1.12856 0.95679 0.91478 1.22942 1.00275 0.94015 0.92801 1.69967 1.17247 1.24358 1.11059 1.23670 1.01587 0.84000 0.94641 1.45392 1.43472 1.10298 1.12283 1.22856 1.03527 0.78241 1.00071 1.22025 0.97930 0.92924 0.89698 1.48341 1.18172 1.09333 1.60421 1.21424 0.79623 0.90646 0.75808 1.90531 1.69438 1.25382 1.58885 1.19105 0.94721 0.92606 0.96582 1.21364 1.02209 0.95860 1.38054 0.92336 1.25761 1.01969 0.95053 0.95978 1.70026 1.37769 1.04475 1.43935 0.85498 0.78939 0.78061 0.78877 1.19625 1.20324 1.19750 1.20323 0.99399 0.84072 0.88932 0.91966 0.89847 0.93232 0.91578 0.89039 0.90670 0.92595 0.89985 0.92952 0.75798 0.78941 0.84604 0.88388 0.87433 0.86361 0.94339 0.93371 0.92418 0.86971 0.85601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 8.40 71.99 0.60 -1.64 16 2 C 0.16 2.24 1.06 3.61 0.00 2.24 16 3 C -0.15 -1.21 8.59 71.98 0.62 -0.59 16 4 C -0.16 -2.66 8.40 71.98 0.60 -2.06 16 5 N -0.72 -11.86 4.90 -426.74 -2.09 -13.95 16 6 C 0.60 14.14 7.19 86.47 0.62 14.76 16 7 O -0.55 -15.45 13.15 -4.30 -0.06 -15.51 16 8 C -0.10 -2.43 6.92 40.13 0.28 -2.15 16 9 C 0.05 1.51 11.67 84.11 0.98 2.49 16 10 N -0.51 -15.54 11.20 -186.93 -2.09 -17.63 16 11 C 0.22 6.25 7.75 138.26 1.07 7.32 16 12 N -0.43 -10.10 3.15 -501.47 -1.58 -11.68 16 13 C 0.08 1.27 5.42 86.49 0.47 1.73 16 14 C 0.10 1.96 6.44 86.36 0.56 2.51 16 15 N -0.63 -18.52 2.97 -821.30 -2.44 -20.97 16 16 C 0.53 21.88 7.71 87.66 0.68 22.56 16 17 O -0.56 -26.25 14.90 -3.05 -0.05 -26.29 16 18 C 0.01 0.44 3.89 29.10 0.11 0.55 16 19 C -0.54 -30.12 8.92 25.60 0.23 -29.89 16 20 H 0.06 3.42 6.75 -2.91 -0.02 3.40 16 21 C 0.01 0.64 5.46 84.66 0.46 1.10 16 22 N -0.92 -52.72 13.29 21.45 0.28 -52.44 16 23 Si 0.96 43.97 29.54 68.60 2.03 45.99 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 25 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 26 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 27 C 0.20 5.37 6.63 85.52 0.57 5.94 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 1.00 6.35 -2.39 -0.02 0.99 16 31 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 34 H 0.06 1.24 5.99 -2.39 -0.01 1.23 16 35 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.40 5.20 4.71 -92.70 -0.44 4.76 16 38 H 0.19 4.75 8.06 -2.91 -0.02 4.72 16 39 H 0.14 1.31 6.63 -2.39 -0.02 1.29 16 40 H 0.10 1.67 7.99 -2.39 -0.02 1.65 16 41 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.12 2.52 7.02 -2.39 -0.02 2.51 16 43 H 0.04 1.94 7.55 -2.39 -0.02 1.92 16 44 H 0.05 2.34 8.13 -2.39 -0.02 2.32 16 45 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 46 H 0.11 3.50 6.26 -2.39 -0.01 3.49 16 47 H 0.13 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -73.39 375.87 2.42 -70.97 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.56 Total: 16.64 kcal Atomic # 6 Polarization: 17.01 SS G_CDS: 7.85 Total: 24.86 kcal Atomic # 7 Polarization: -108.75 SS G_CDS: -7.92 Total: -116.67 kcal Atomic # 8 Polarization: -41.70 SS G_CDS: -0.10 Total: -41.80 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -73.39 2.42 -70.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269023610.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.751 kcal (2) G-P(sol) polarization free energy of solvation -73.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds