Wall clock time and date at job start Tue Mar 31 2020 19:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47237 * 2 1 4 4 H 1.08991 * 109.47156 * 305.62779 * 3 2 1 5 5 C 1.53004 * 109.46640 * 65.62525 * 3 2 1 6 6 N 1.46497 * 109.47207 * 174.99865 * 5 3 2 7 7 C 1.34771 * 120.00432 * 179.97438 * 6 5 3 8 8 O 1.21285 * 119.99775 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00269 * 180.02562 * 7 6 5 10 10 C 1.50704 * 109.47150 * 180.02562 * 9 7 6 11 11 C 1.38672 * 120.41375 * 269.72202 * 10 9 7 12 12 C 1.38634 * 118.41466 * 179.78168 * 11 10 9 13 13 C 1.38230 * 119.15927 * 0.51530 * 12 11 10 14 14 N 1.31848 * 120.76710 * 359.71929 * 13 12 11 15 15 C 1.31888 * 121.72286 * 0.02562 * 14 13 12 16 16 N 1.46893 * 109.46944 * 185.61982 * 3 2 1 17 17 C 1.46905 * 110.99941 * 86.26893 * 16 3 2 18 18 C 1.50700 * 109.47326 * 174.55043 * 17 16 3 19 19 O 1.21293 * 120.00088 * 0.02562 * 18 17 16 20 20 N 1.34774 * 119.99973 * 180.02562 * 18 17 16 21 21 C 1.37094 * 119.99881 * 180.02562 * 20 18 17 22 22 H 1.08002 * 120.00218 * 359.97438 * 21 20 18 23 23 C 1.38951 * 119.99849 * 179.97438 * 21 20 18 24 24 N 1.31409 * 120.00018 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 120.00176 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.47041 * 89.99801 * 25 23 21 27 27 H 1.48501 * 109.47053 * 209.99918 * 25 23 21 28 28 H 1.48499 * 109.47079 * 329.99931 * 25 23 21 29 29 H 1.08992 * 109.47018 * 294.37811 * 1 2 3 30 30 H 1.09000 * 109.47155 * 174.37123 * 1 2 3 31 31 H 1.09004 * 109.46679 * 54.37454 * 1 2 3 32 32 H 1.08992 * 109.47069 * 120.00692 * 2 1 3 33 33 H 1.09002 * 109.46774 * 240.00603 * 2 1 3 34 34 H 1.09000 * 109.46977 * 294.99912 * 5 3 2 35 35 H 1.08999 * 109.47238 * 54.99908 * 5 3 2 36 36 H 0.97004 * 119.99752 * 359.97438 * 6 5 3 37 37 H 1.08996 * 109.46782 * 300.00090 * 9 7 6 38 38 H 1.08999 * 109.47101 * 60.00014 * 9 7 6 39 39 H 1.07990 * 120.79396 * 0.02562 * 11 10 9 40 40 H 1.08004 * 120.41878 * 180.21836 * 12 11 10 41 41 H 1.08000 * 119.61541 * 179.74568 * 13 12 11 42 42 H 1.08003 * 119.61272 * 180.02562 * 15 14 13 43 43 H 1.00897 * 111.00476 * 322.31622 * 16 3 2 44 44 H 1.08999 * 109.47094 * 294.55860 * 17 16 3 45 45 H 1.09009 * 109.46783 * 54.55091 * 17 16 3 46 46 H 0.97002 * 120.00066 * 359.97438 * 20 18 17 47 47 H 0.97003 * 120.00192 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5968 1.9846 -0.8352 5 6 1.6487 2.1217 1.3140 6 7 2.2381 3.4619 1.3654 7 6 2.0262 4.2507 2.4375 8 8 1.3479 3.8507 3.3599 9 6 2.6320 5.6296 2.4901 10 6 2.2467 6.2985 3.7844 11 6 1.0931 7.0641 3.8626 12 6 0.7758 7.6570 5.0750 13 6 1.6195 7.4754 6.1547 14 7 2.7111 6.7445 6.0423 15 6 3.0415 6.1617 4.9063 16 7 3.5027 1.4447 -0.1356 17 6 3.9004 1.4009 -1.5491 18 6 5.3974 1.5392 -1.6544 19 8 6.0672 1.6616 -0.6506 20 7 5.9919 1.5268 -2.8638 21 6 7.3537 1.6521 -2.9595 22 1 7.9501 1.7611 -2.0657 23 6 7.9667 1.6388 -4.2064 24 7 9.2720 1.7593 -4.2982 25 14 6.9353 1.4495 -5.7523 26 1 6.5277 2.7906 -6.2427 27 1 7.7333 0.7612 -6.7986 28 1 5.7249 0.6461 -5.4445 29 1 -0.3633 0.4241 0.9360 30 1 -0.3633 -1.0227 -0.1008 31 1 -0.3633 0.5986 -0.8354 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 0.5631 2.1997 1.3734 35 1 2.0170 1.5305 2.1524 36 1 2.7809 3.7816 0.6278 37 1 3.7176 5.5519 2.4308 38 1 2.2636 6.2205 1.6515 39 1 0.4550 7.1921 3.0009 40 1 -0.1168 8.2571 5.1732 41 1 1.3816 7.9373 7.1015 42 1 3.9435 5.5700 4.8526 43 1 3.9148 0.6814 0.3797 44 1 3.5918 0.4504 -1.9841 45 1 3.4212 2.2192 -2.0869 46 1 5.4563 1.4285 -3.6666 47 1 9.7000 1.7504 -5.1687 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269391427.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:48 Heat of formation + Delta-G solvation = -41.325661 kcal Electronic energy + Delta-G solvation = -27741.013067 eV Core-core repulsion = 23730.485980 eV Total energy + Delta-G solvation = -4010.527087 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.56878 -39.51215 -38.65333 -37.39853 -34.22597 -33.91176 -33.73213 -32.64595 -32.08809 -31.69233 -29.22067 -27.80173 -26.11220 -24.24194 -23.74865 -23.35374 -22.54534 -20.98425 -20.25829 -19.44991 -18.43960 -17.37781 -17.05174 -16.66677 -16.63990 -16.04660 -15.50324 -15.42880 -15.10230 -14.93362 -14.73293 -14.35921 -13.93512 -13.91285 -13.63548 -13.38061 -13.26771 -13.24217 -13.11435 -12.99252 -12.53528 -12.38749 -12.26717 -12.08802 -11.79111 -11.72002 -11.61382 -11.34464 -11.20978 -10.86765 -10.64873 -10.12938 -10.02712 -9.87152 -9.62538 -9.62308 -9.13351 -9.02667 -8.70577 -8.26011 -8.21897 -6.35930 -3.87670 0.91608 1.11481 2.60920 2.97089 3.01662 3.10644 3.15082 3.67495 3.70390 3.93737 4.05338 4.22723 4.49286 4.57836 4.58690 4.62650 4.77012 4.80304 4.82063 4.91762 4.94120 5.10347 5.13302 5.19165 5.22983 5.24419 5.43888 5.49250 5.51687 5.57926 5.61739 5.67491 5.72959 5.76921 5.83008 5.89289 5.92146 6.00878 6.04233 6.43617 6.51389 6.94084 7.41013 7.52550 7.54323 7.81050 8.09224 8.21865 8.54309 8.90074 9.37116 9.77069 10.77102 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011810 B = 0.002330 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.300289 B =12012.676272 C =13694.734914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.153 4.153 3 C 0.072 3.928 4 H 0.084 0.916 5 C 0.134 3.866 6 N -0.711 5.711 7 C 0.514 3.486 8 O -0.545 6.545 9 C -0.102 4.102 10 C -0.112 4.112 11 C -0.064 4.064 12 C -0.173 4.173 13 C 0.093 3.907 14 N -0.484 5.484 15 C 0.114 3.886 16 N -0.662 5.662 17 C 0.047 3.953 18 C 0.449 3.551 19 O -0.562 6.562 20 N -0.590 5.590 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.880 5.880 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.410 0.590 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.354 0.646 44 H 0.046 0.954 45 H 0.087 0.913 46 H 0.370 0.630 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.343 6.290 8.795 23.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.192 4.192 3 C -0.039 4.039 4 H 0.102 0.898 5 C 0.010 3.990 6 N -0.363 5.363 7 C 0.300 3.700 8 O -0.423 6.423 9 C -0.142 4.142 10 C -0.114 4.114 11 C -0.090 4.090 12 C -0.193 4.193 13 C -0.064 4.064 14 N -0.193 5.193 15 C -0.043 4.043 16 N -0.294 5.294 17 C -0.086 4.086 18 C 0.234 3.766 19 O -0.444 6.444 20 N -0.230 5.230 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.520 5.520 25 Si 0.707 3.293 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.246 0.754 37 H 0.130 0.870 38 H 0.123 0.877 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.171 0.829 42 H 0.172 0.828 43 H 0.174 0.826 44 H 0.064 0.936 45 H 0.105 0.895 46 H 0.202 0.798 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.547 6.670 10.777 24.142 hybrid contribution -1.151 -0.944 -2.849 3.215 sum -21.699 5.726 7.928 23.801 Atomic orbital electron populations 1.21774 0.95244 1.01838 1.02053 1.22230 0.96943 0.97201 1.02863 1.21949 0.88965 0.95227 0.97713 0.89790 1.21341 0.97334 0.82988 0.97342 1.45799 1.53245 1.15805 1.21469 1.20410 0.80769 0.86716 0.82154 1.90714 1.39685 1.75175 1.36748 1.20616 1.03598 0.93674 0.96322 1.20315 0.96408 0.98494 0.96208 1.21427 0.95085 0.94374 0.98080 1.22091 1.01322 1.01861 0.94043 1.22749 0.90151 0.94918 0.98589 1.67696 1.17420 1.07902 1.26239 1.22661 0.98829 0.95401 0.87398 1.60112 1.06026 1.52920 1.10361 1.21764 0.95824 1.00972 0.90031 1.19693 0.88493 0.84279 0.84120 1.90580 1.65111 1.53220 1.35487 1.42216 1.08241 1.66340 1.06211 1.19421 0.80352 1.47383 0.96257 0.86277 1.25049 0.95684 0.97656 0.97802 1.69619 1.08160 1.48947 1.25277 0.86672 0.80138 0.78873 0.83666 1.19605 1.20189 1.19587 0.92313 0.92680 0.92612 0.91211 0.91373 0.91315 0.91592 0.75382 0.87048 0.87724 0.85087 0.84893 0.82940 0.82824 0.82581 0.93600 0.89528 0.79754 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.54 37.16 0.35 -0.75 16 2 C -0.15 -1.30 5.38 -26.73 -0.14 -1.44 16 3 C 0.07 0.69 2.21 -67.71 -0.15 0.54 16 4 H 0.08 0.74 7.69 -51.93 -0.40 0.34 16 5 C 0.13 1.40 5.02 -4.04 -0.02 1.38 16 6 N -0.71 -7.62 5.39 -60.29 -0.32 -7.95 16 7 C 0.51 6.09 7.82 -10.99 -0.09 6.01 16 8 O -0.55 -8.52 16.03 5.55 0.09 -8.43 16 9 C -0.10 -0.91 5.86 -29.03 -0.17 -1.08 16 10 C -0.11 -1.18 4.39 -104.48 -0.46 -1.64 16 11 C -0.06 -0.59 9.86 -39.27 -0.39 -0.98 16 12 C -0.17 -1.50 10.11 -39.44 -0.40 -1.90 16 13 C 0.09 0.92 11.18 -17.55 -0.20 0.72 16 14 N -0.48 -6.00 10.36 -13.25 -0.14 -6.14 16 15 C 0.11 1.34 10.86 -17.55 -0.19 1.15 16 16 N -0.66 -8.51 5.23 -107.99 -0.56 -9.08 16 17 C 0.05 0.67 5.99 -4.97 -0.03 0.64 16 18 C 0.45 9.40 7.83 -10.99 -0.09 9.31 16 19 O -0.56 -14.21 15.90 5.55 0.09 -14.12 16 20 N -0.59 -13.29 5.09 -10.96 -0.06 -13.35 16 21 C -0.31 -8.35 10.16 -14.93 -0.15 -8.50 16 22 H 0.12 3.75 7.39 -52.49 -0.39 3.36 16 23 C 0.04 1.10 5.50 -17.47 -0.10 1.00 16 24 N -0.88 -25.18 13.96 55.50 0.77 -24.40 16 25 Si 0.88 18.71 27.74 -169.99 -4.71 14.00 16 26 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 27 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 28 H -0.27 -5.20 6.52 56.52 0.37 -4.83 16 29 H 0.06 0.43 6.98 -51.93 -0.36 0.07 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.60 7.52 -51.93 -0.39 0.21 16 34 H 0.07 0.69 6.96 -51.93 -0.36 0.33 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.41 4.15 8.14 -40.82 -0.33 3.82 16 37 H 0.11 0.90 8.09 -51.93 -0.42 0.48 16 38 H 0.10 0.68 8.09 -51.93 -0.42 0.26 16 39 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 41 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.15 1.61 8.06 -52.48 -0.42 1.19 16 43 H 0.35 4.96 8.36 -39.29 -0.33 4.63 16 44 H 0.05 0.58 7.56 -51.93 -0.39 0.19 16 45 H 0.09 1.05 7.92 -51.92 -0.41 0.64 16 46 H 0.37 7.27 5.76 -40.82 -0.24 7.03 16 47 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 395.73 15.07 5.96 5.96 Total: -1.00 -35.16 395.73 -8.09 -43.24 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: -6.99 Total: 15.81 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -2.21 Total: 4.45 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: -0.31 Total: -60.92 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: 0.18 Total: -22.55 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -4.71 Total: 14.00 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.16 -8.09 -43.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269391427.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.919 kcal (2) G-P(sol) polarization free energy of solvation -35.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds