Wall clock time and date at job start Tue Mar 31 2020 19:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47237 * 2 1 4 4 H 1.08991 * 109.47156 * 305.62779 * 3 2 1 5 5 C 1.53004 * 109.46640 * 65.62525 * 3 2 1 6 6 N 1.46497 * 109.47207 * 174.99865 * 5 3 2 7 7 C 1.34771 * 120.00432 * 179.97438 * 6 5 3 8 8 O 1.21285 * 119.99775 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00269 * 180.02562 * 7 6 5 10 10 C 1.50704 * 109.47150 * 180.02562 * 9 7 6 11 11 C 1.38672 * 120.41375 * 269.72202 * 10 9 7 12 12 C 1.38634 * 118.41466 * 179.78168 * 11 10 9 13 13 C 1.38230 * 119.15927 * 0.51530 * 12 11 10 14 14 N 1.31848 * 120.76710 * 359.71929 * 13 12 11 15 15 C 1.31888 * 121.72286 * 0.02562 * 14 13 12 16 16 N 1.46893 * 109.46944 * 185.61982 * 3 2 1 17 17 C 1.46905 * 110.99941 * 86.26893 * 16 3 2 18 18 C 1.50700 * 109.47326 * 174.55043 * 17 16 3 19 19 O 1.21293 * 120.00088 * 0.02562 * 18 17 16 20 20 N 1.34774 * 119.99973 * 180.02562 * 18 17 16 21 21 C 1.37094 * 119.99881 * 180.02562 * 20 18 17 22 22 H 1.08002 * 120.00218 * 359.97438 * 21 20 18 23 23 C 1.38951 * 119.99849 * 179.97438 * 21 20 18 24 24 N 1.31409 * 120.00018 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 120.00176 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.47041 * 89.99801 * 25 23 21 27 27 H 1.48501 * 109.47053 * 209.99918 * 25 23 21 28 28 H 1.48499 * 109.47079 * 329.99931 * 25 23 21 29 29 H 1.08992 * 109.47018 * 294.37811 * 1 2 3 30 30 H 1.09000 * 109.47155 * 174.37123 * 1 2 3 31 31 H 1.09004 * 109.46679 * 54.37454 * 1 2 3 32 32 H 1.08992 * 109.47069 * 120.00692 * 2 1 3 33 33 H 1.09002 * 109.46774 * 240.00603 * 2 1 3 34 34 H 1.09000 * 109.46977 * 294.99912 * 5 3 2 35 35 H 1.08999 * 109.47238 * 54.99908 * 5 3 2 36 36 H 0.97004 * 119.99752 * 359.97438 * 6 5 3 37 37 H 1.08996 * 109.46782 * 300.00090 * 9 7 6 38 38 H 1.08999 * 109.47101 * 60.00014 * 9 7 6 39 39 H 1.07990 * 120.79396 * 0.02562 * 11 10 9 40 40 H 1.08004 * 120.41878 * 180.21836 * 12 11 10 41 41 H 1.08000 * 119.61541 * 179.74568 * 13 12 11 42 42 H 1.08003 * 119.61272 * 180.02562 * 15 14 13 43 43 H 1.00897 * 111.00476 * 322.31622 * 16 3 2 44 44 H 1.08999 * 109.47094 * 294.55860 * 17 16 3 45 45 H 1.09009 * 109.46783 * 54.55091 * 17 16 3 46 46 H 0.97002 * 120.00066 * 359.97438 * 20 18 17 47 47 H 0.97003 * 120.00192 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5968 1.9846 -0.8352 5 6 1.6487 2.1217 1.3140 6 7 2.2381 3.4619 1.3654 7 6 2.0262 4.2507 2.4375 8 8 1.3479 3.8507 3.3599 9 6 2.6320 5.6296 2.4901 10 6 2.2467 6.2985 3.7844 11 6 1.0931 7.0641 3.8626 12 6 0.7758 7.6570 5.0750 13 6 1.6195 7.4754 6.1547 14 7 2.7111 6.7445 6.0423 15 6 3.0415 6.1617 4.9063 16 7 3.5027 1.4447 -0.1356 17 6 3.9004 1.4009 -1.5491 18 6 5.3974 1.5392 -1.6544 19 8 6.0672 1.6616 -0.6506 20 7 5.9919 1.5268 -2.8638 21 6 7.3537 1.6521 -2.9595 22 1 7.9501 1.7611 -2.0657 23 6 7.9667 1.6388 -4.2064 24 7 9.2720 1.7593 -4.2982 25 14 6.9353 1.4495 -5.7523 26 1 6.5277 2.7906 -6.2427 27 1 7.7333 0.7612 -6.7986 28 1 5.7249 0.6461 -5.4445 29 1 -0.3633 0.4241 0.9360 30 1 -0.3633 -1.0227 -0.1008 31 1 -0.3633 0.5986 -0.8354 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 0.5631 2.1997 1.3734 35 1 2.0170 1.5305 2.1524 36 1 2.7809 3.7816 0.6278 37 1 3.7176 5.5519 2.4308 38 1 2.2636 6.2205 1.6515 39 1 0.4550 7.1921 3.0009 40 1 -0.1168 8.2571 5.1732 41 1 1.3816 7.9373 7.1015 42 1 3.9435 5.5700 4.8526 43 1 3.9148 0.6814 0.3797 44 1 3.5918 0.4504 -1.9841 45 1 3.4212 2.2192 -2.0869 46 1 5.4563 1.4285 -3.6666 47 1 9.7000 1.7504 -5.1687 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269391427.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:47 Heat of formation + Delta-G solvation = -69.537965 kcal Electronic energy + Delta-G solvation = -27742.236444 eV Core-core repulsion = 23730.485980 eV Total energy + Delta-G solvation = -4011.750464 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.36756 -40.49141 -40.13123 -38.46937 -35.98808 -35.01053 -34.52235 -33.76978 -33.46985 -32.80964 -30.06973 -28.82514 -27.39949 -25.56366 -24.50074 -24.35070 -23.29305 -21.81545 -21.25354 -21.08712 -20.24694 -18.23041 -17.90495 -17.73428 -17.45698 -17.28546 -16.75017 -16.54234 -16.41237 -15.90972 -15.72520 -15.39684 -15.18414 -14.92710 -14.68235 -14.52724 -14.25231 -14.18089 -14.10409 -13.96160 -13.91550 -13.50506 -13.39553 -13.01851 -12.93226 -12.57284 -12.53563 -12.40592 -12.37940 -12.05498 -11.96341 -11.57173 -11.47390 -11.05273 -10.66621 -10.40414 -10.39292 -10.21105 -9.94645 -9.89715 -9.30607 -8.38426 -5.99041 0.16846 0.37748 1.31845 1.37901 1.46530 1.69921 2.01612 2.25371 2.32439 2.72530 2.94082 3.18389 3.43146 3.51607 3.74481 3.83270 3.92041 3.94084 4.09323 4.12524 4.13775 4.22364 4.24741 4.38565 4.49883 4.52982 4.55446 4.58695 4.62414 4.77456 4.79742 4.85926 4.88721 4.96662 5.16617 5.19355 5.23346 5.31894 5.39212 5.55897 5.57374 5.80638 5.93564 6.06295 6.34337 6.63102 6.66757 6.92589 7.04192 7.33345 7.44622 8.02289 8.79287 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011810 B = 0.002330 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.300289 B =12012.676272 C =13694.734914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.149 4.149 3 C 0.084 3.916 4 H 0.106 0.894 5 C 0.135 3.865 6 N -0.706 5.706 7 C 0.512 3.488 8 O -0.588 6.588 9 C -0.096 4.096 10 C -0.122 4.122 11 C -0.072 4.072 12 C -0.169 4.169 13 C 0.078 3.922 14 N -0.517 5.517 15 C 0.087 3.913 16 N -0.676 5.676 17 C 0.063 3.937 18 C 0.450 3.550 19 O -0.613 6.613 20 N -0.593 5.593 21 C -0.325 4.325 22 H 0.054 0.946 23 C -0.018 4.018 24 N -0.937 5.937 25 Si 0.965 3.035 26 H -0.256 1.256 27 H -0.280 1.280 28 H -0.229 1.229 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.045 0.955 36 H 0.415 0.585 37 H 0.117 0.883 38 H 0.136 0.864 39 H 0.156 0.844 40 H 0.166 0.834 41 H 0.177 0.823 42 H 0.150 0.850 43 H 0.345 0.655 44 H 0.076 0.924 45 H 0.122 0.878 46 H 0.389 0.611 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.396 6.691 6.298 27.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.188 4.188 3 C -0.026 4.026 4 H 0.124 0.876 5 C 0.011 3.989 6 N -0.357 5.357 7 C 0.299 3.701 8 O -0.469 6.469 9 C -0.136 4.136 10 C -0.124 4.124 11 C -0.097 4.097 12 C -0.188 4.188 13 C -0.079 4.079 14 N -0.226 5.226 15 C -0.070 4.070 16 N -0.308 5.308 17 C -0.069 4.069 18 C 0.237 3.763 19 O -0.497 6.497 20 N -0.235 5.235 21 C -0.455 4.455 22 H 0.072 0.928 23 C -0.217 4.217 24 N -0.578 5.578 25 Si 0.786 3.214 26 H -0.181 1.181 27 H -0.205 1.205 28 H -0.152 1.152 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.063 0.937 36 H 0.252 0.748 37 H 0.135 0.865 38 H 0.153 0.847 39 H 0.174 0.826 40 H 0.184 0.816 41 H 0.194 0.806 42 H 0.168 0.832 43 H 0.164 0.836 44 H 0.094 0.906 45 H 0.140 0.860 46 H 0.225 0.775 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -24.628 7.067 8.269 26.923 hybrid contribution 0.134 -1.047 -1.888 2.163 sum -24.495 6.019 6.381 26.018 Atomic orbital electron populations 1.21747 0.94116 1.02387 1.02338 1.22179 0.97830 0.96157 1.02674 1.21934 0.86781 0.96148 0.97744 0.87644 1.21352 0.97687 0.82665 0.97210 1.45815 1.52804 1.15759 1.21278 1.20867 0.80069 0.87602 0.81569 1.90693 1.41766 1.76209 1.38197 1.20649 1.03823 0.92262 0.96837 1.20486 0.96816 0.98852 0.96260 1.21828 0.94823 0.93779 0.99316 1.22476 1.01838 1.01228 0.93250 1.23258 0.89758 0.94644 1.00239 1.67651 1.18993 1.09103 1.26862 1.22773 0.99603 0.96399 0.88190 1.60066 1.08171 1.52914 1.09608 1.21682 0.90014 1.03857 0.91392 1.21061 0.91431 0.81059 0.82699 1.90566 1.67321 1.54528 1.37250 1.42041 1.06410 1.67273 1.07761 1.18980 0.82560 1.49248 0.94664 0.92793 1.26137 0.97115 0.96354 1.02055 1.69813 1.10910 1.50369 1.26701 0.85358 0.79173 0.79983 0.76934 1.18066 1.20502 1.15237 0.92660 0.92221 0.91527 0.92052 0.90989 0.90481 0.93689 0.74814 0.86468 0.84651 0.82643 0.81629 0.80624 0.83241 0.83617 0.90602 0.86041 0.77504 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.54 71.98 0.69 -1.04 16 2 C -0.15 -2.12 5.38 30.60 0.16 -1.96 16 3 C 0.08 1.36 2.21 44.92 0.10 1.46 16 4 H 0.11 1.33 7.69 -2.39 -0.02 1.31 16 5 C 0.14 2.62 5.02 86.38 0.43 3.05 16 6 N -0.71 -14.11 5.39 -463.06 -2.49 -16.61 16 7 C 0.51 11.77 7.82 87.66 0.69 12.46 16 8 O -0.59 -18.41 16.03 -3.04 -0.05 -18.46 16 9 C -0.10 -1.62 5.86 29.10 0.17 -1.45 16 10 C -0.12 -2.51 4.39 -19.77 -0.09 -2.60 16 11 C -0.07 -1.22 9.86 22.47 0.22 -0.99 16 12 C -0.17 -2.60 10.11 22.36 0.23 -2.38 16 13 C 0.08 1.48 11.18 84.69 0.95 2.43 16 14 N -0.52 -13.19 10.36 -195.85 -2.03 -15.22 16 15 C 0.09 2.12 10.86 84.67 0.92 3.04 16 16 N -0.68 -15.95 5.23 -495.57 -2.59 -18.54 16 17 C 0.06 1.56 5.99 85.56 0.51 2.07 16 18 C 0.45 18.44 7.83 87.66 0.69 19.12 16 19 O -0.61 -31.85 15.90 -3.07 -0.05 -31.90 16 20 N -0.59 -26.06 5.09 -306.99 -1.56 -27.63 16 21 C -0.33 -18.38 10.16 84.04 0.85 -17.52 16 22 H 0.05 3.67 7.39 -2.91 -0.02 3.65 16 23 C -0.02 -0.99 5.50 84.93 0.47 -0.52 16 24 N -0.94 -55.61 13.96 21.66 0.30 -55.30 16 25 Si 0.97 37.19 27.74 68.60 1.90 39.10 16 26 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 27 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 28 H -0.23 -7.24 6.52 99.48 0.65 -6.59 16 29 H 0.05 0.69 6.98 -2.39 -0.02 0.67 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.07 1.01 7.52 -2.39 -0.02 0.99 16 34 H 0.08 1.40 6.96 -2.39 -0.02 1.38 16 35 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.42 7.54 8.14 -92.71 -0.75 6.78 16 37 H 0.12 1.84 8.09 -2.39 -0.02 1.82 16 38 H 0.14 1.41 8.09 -2.39 -0.02 1.39 16 39 H 0.16 1.77 8.06 -2.92 -0.02 1.75 16 40 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 41 H 0.18 2.26 8.06 -2.91 -0.02 2.24 16 42 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 43 H 0.34 9.35 8.36 -89.70 -0.75 8.60 16 44 H 0.08 1.53 7.56 -2.39 -0.02 1.51 16 45 H 0.12 2.28 7.92 -2.38 -0.02 2.26 16 46 H 0.39 13.92 5.76 -92.71 -0.53 13.39 16 47 H 0.28 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -83.94 395.73 -0.67 -84.61 By element: Atomic # 1 Polarization: 45.87 SS G_CDS: -1.08 Total: 44.79 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: 6.99 Total: 15.17 kcal Atomic # 7 Polarization: -124.93 SS G_CDS: -8.37 Total: -133.30 kcal Atomic # 8 Polarization: -50.26 SS G_CDS: -0.10 Total: -50.36 kcal Atomic # 14 Polarization: 37.19 SS G_CDS: 1.90 Total: 39.10 kcal Total: -83.94 -0.67 -84.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269391427.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.068 kcal (2) G-P(sol) polarization free energy of solvation -83.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds