Wall clock time and date at job start Tue Mar 31 2020 18:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46511 * 2 1 4 4 C 1.52996 * 109.47169 * 239.99899 * 2 1 3 5 5 N 1.46497 * 109.47223 * 119.99700 * 2 1 3 6 6 C 1.34778 * 119.99947 * 60.00221 * 5 2 1 7 7 O 1.21563 * 119.99841 * 359.97438 * 6 5 2 8 8 C 1.47712 * 119.99977 * 180.02562 * 6 5 2 9 9 N 1.31872 * 126.58731 * 359.96910 * 8 6 5 10 10 N 1.28483 * 110.05396 * 179.97438 * 9 8 6 11 11 H 0.96996 * 124.90722 * 180.02562 * 10 9 8 12 12 C 1.35223 * 110.19249 * 0.02562 * 10 9 8 13 13 C 1.35189 * 107.07981 * 359.93154 * 12 10 9 14 14 C 1.50382 * 109.43739 * 179.97438 * 13 12 10 15 15 N 1.46836 * 107.54005 * 0.10862 * 14 13 12 16 16 C 1.34777 * 126.87462 * 179.97438 * 15 14 13 17 17 O 1.21285 * 120.00082 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00129 * 179.97438 * 16 15 14 19 19 C 1.52992 * 109.47163 * 180.02562 * 18 16 15 20 20 C 1.50703 * 109.47163 * 180.02562 * 19 18 16 21 21 H 1.07995 * 119.99532 * 359.97438 * 20 19 18 22 22 C 1.37882 * 120.00079 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99758 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99756 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47157 * 90.00036 * 24 22 20 26 26 H 1.48504 * 109.46667 * 209.99645 * 24 22 20 27 27 H 1.48495 * 109.47421 * 329.99737 * 24 22 20 28 28 C 1.46807 * 106.25315 * 359.93759 * 15 14 13 29 29 H 1.08996 * 109.47338 * 299.99764 * 1 2 3 30 30 H 1.08997 * 109.47344 * 60.00333 * 1 2 3 31 31 H 1.09008 * 109.46778 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47068 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.47287 * 299.99389 * 3 2 1 34 34 H 1.08998 * 109.47626 * 59.99962 * 3 2 1 35 35 H 1.08998 * 109.47384 * 299.99864 * 4 2 1 36 36 H 1.09003 * 109.46968 * 60.00052 * 4 2 1 37 37 H 1.09004 * 109.47157 * 179.97438 * 4 2 1 38 38 H 0.97005 * 120.00064 * 240.00396 * 5 2 1 39 39 H 1.09002 * 109.85619 * 240.57739 * 14 13 12 40 40 H 1.09001 * 109.85484 * 119.63432 * 14 13 12 41 41 H 1.09005 * 109.46601 * 300.00169 * 18 16 15 42 42 H 1.09001 * 109.47163 * 59.99771 * 18 16 15 43 43 H 1.09002 * 109.47371 * 299.99885 * 19 18 16 44 44 H 1.09001 * 109.47399 * 60.00142 * 19 18 16 45 45 H 0.96996 * 119.99456 * 180.02562 * 23 22 20 46 46 H 1.08992 * 109.84319 * 119.49235 * 28 15 14 47 47 H 1.08998 * 109.83869 * 240.40836 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0184 -0.6905 1.1962 6 6 1.6928 -1.9809 1.4095 7 8 0.9936 -2.5715 0.6095 8 6 2.1847 -2.6770 2.6159 9 7 2.9459 -2.1651 3.5633 10 7 3.1832 -3.0500 4.4640 11 1 3.7206 -2.9035 5.2581 12 6 2.5756 -4.2152 4.1451 13 6 1.9281 -4.0181 2.9749 14 6 1.2311 -5.2872 2.5687 15 7 1.5059 -6.2933 3.6022 16 6 1.0690 -7.5681 3.6264 17 8 0.3716 -7.9873 2.7270 18 6 1.4480 -8.4729 4.7704 19 6 0.8274 -9.8546 4.5549 20 6 1.2058 -10.7593 5.6993 21 1 1.8271 -10.3861 6.4999 22 6 0.7587 -12.0634 5.7241 23 7 1.0894 -12.8530 6.7225 24 14 -0.3154 -12.7090 4.3388 25 1 0.5438 -13.2855 3.2737 26 1 -1.2234 -13.7597 4.8652 27 1 -1.1206 -11.5952 3.7766 28 6 2.3526 -5.6332 4.6035 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6765 1.9564 -0.8901 34 1 1.6765 1.9564 0.8899 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7209 -1.2494 38 1 2.5760 -0.2191 1.8347 39 1 1.6151 -5.6292 1.6076 40 1 0.1574 -5.1133 2.4975 41 1 2.5331 -8.5655 4.8163 42 1 1.0795 -8.0505 5.7052 43 1 -0.2578 -9.7624 4.5087 44 1 1.1963 -10.2769 3.6202 45 1 0.7752 -13.7705 6.7397 46 1 1.8509 -5.6345 5.5711 47 1 3.3075 -6.1530 4.6811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271769669.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:40 Heat of formation + Delta-G solvation = 19.363472 kcal Electronic energy + Delta-G solvation = -28256.467042 eV Core-core repulsion = 24248.571633 eV Total energy + Delta-G solvation = -4007.895409 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.37919 -40.21465 -39.57558 -36.93478 -36.74943 -33.54413 -33.04021 -31.94901 -31.34335 -30.84963 -28.40046 -27.78197 -27.55553 -26.54846 -25.08680 -24.21014 -21.34154 -20.92388 -20.53327 -19.77701 -18.99787 -18.04770 -17.49664 -17.05107 -16.84479 -16.16404 -15.83172 -15.61775 -15.33390 -14.98430 -14.58488 -14.34660 -14.09977 -13.91025 -13.90636 -13.43480 -13.11543 -12.88882 -12.62304 -12.47887 -12.45936 -12.38355 -12.32432 -12.29719 -11.95970 -11.63065 -11.51284 -11.42592 -11.40243 -10.98031 -10.20743 -10.11218 -10.07821 -9.80710 -9.78581 -9.52983 -9.38467 -9.38092 -9.20388 -8.52151 -8.41792 -6.04450 -4.03502 1.12891 1.60272 2.04616 2.74655 2.92677 2.98296 3.08806 3.38392 3.45206 3.56248 3.68907 4.15211 4.29615 4.42329 4.50452 4.53728 4.67554 4.84585 5.08746 5.11558 5.13597 5.14341 5.24719 5.31299 5.38028 5.42397 5.46597 5.48366 5.60138 5.62694 5.63594 5.69441 5.92582 5.96886 5.98734 6.03574 6.05953 6.21643 6.25188 6.48294 6.61699 7.13316 7.33696 7.40422 7.41361 7.56807 7.76922 7.93312 8.42065 8.52730 8.97795 9.58588 11.08163 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.025244 B = 0.002112 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.921412 B =13253.698544 C =14150.300604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.168 3.832 3 C -0.155 4.155 4 C -0.166 4.166 5 N -0.713 5.713 6 C 0.606 3.394 7 O -0.517 6.517 8 C 0.019 3.981 9 N -0.246 5.246 10 N -0.349 5.349 11 H 0.449 0.551 12 C -0.021 4.021 13 C -0.162 4.162 14 C 0.183 3.817 15 N -0.625 5.625 16 C 0.537 3.463 17 O -0.524 6.524 18 C -0.115 4.115 19 C -0.001 4.001 20 C -0.525 4.525 21 H 0.073 0.927 22 C 0.069 3.931 23 N -0.903 5.903 24 Si 0.876 3.124 25 H -0.276 1.276 26 H -0.288 1.288 27 H -0.260 1.260 28 C 0.193 3.807 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.405 0.595 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.025 0.975 44 H 0.021 0.979 45 H 0.263 0.737 46 H 0.092 0.908 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.236 31.727 -8.114 33.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.083 3.917 3 C -0.212 4.212 4 C -0.224 4.224 5 N -0.366 5.366 6 C 0.391 3.609 7 O -0.390 6.390 8 C -0.142 4.142 9 N -0.083 5.083 10 N -0.062 5.062 11 H 0.294 0.706 12 C -0.148 4.148 13 C -0.173 4.173 14 C 0.060 3.940 15 N -0.363 5.363 16 C 0.329 3.671 17 O -0.398 6.398 18 C -0.155 4.155 19 C -0.038 4.038 20 C -0.563 4.563 21 H 0.091 0.909 22 C -0.132 4.132 23 N -0.542 5.542 24 Si 0.704 3.296 25 H -0.202 1.202 26 H -0.214 1.214 27 H -0.184 1.184 28 C 0.067 3.933 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.240 0.760 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.044 0.956 44 H 0.039 0.961 45 H 0.073 0.927 46 H 0.110 0.890 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.770 31.743 -8.878 33.462 hybrid contribution -0.125 -0.556 0.059 0.573 sum 5.645 31.187 -8.820 32.898 Atomic orbital electron populations 1.22247 0.93992 1.04315 1.01803 1.20382 0.94620 0.91756 0.84900 1.22086 1.01662 0.94356 1.03126 1.22246 1.00993 1.02962 0.96152 1.46007 1.53693 1.11482 1.25410 1.16819 0.79662 0.81259 0.83207 1.90778 1.37062 1.66245 1.44917 1.21142 1.03439 0.92363 0.97233 1.73703 1.17574 1.17439 0.99549 1.42436 1.38546 1.05337 1.19922 0.70551 1.21818 1.01299 0.92593 0.99127 1.20707 1.04264 0.95035 0.97285 1.19410 0.99812 0.82704 0.92114 1.48394 1.52892 1.11337 1.23714 1.21278 0.78503 0.78653 0.88698 1.90706 1.37159 1.72935 1.38983 1.21702 1.02705 0.96571 0.94542 1.19411 0.96719 0.90064 0.97647 1.21074 1.32717 0.95612 1.06913 0.90894 1.24967 0.95742 0.96785 0.95709 1.69908 1.45893 1.07009 1.31347 0.86806 0.81202 0.79031 0.82609 1.20198 1.21438 1.18449 1.19541 0.96844 0.84061 0.92839 0.92667 0.91740 0.90100 0.91873 0.90693 0.91868 0.90100 0.91745 0.92665 0.76017 0.89851 0.89849 0.89366 0.89336 0.95646 0.96093 0.92697 0.88984 0.88967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 8.40 37.16 0.31 -1.02 16 2 C 0.17 1.23 1.06 -131.82 -0.14 1.09 16 3 C -0.15 -0.71 8.59 37.16 0.32 -0.39 16 4 C -0.17 -1.33 8.40 37.16 0.31 -1.02 16 5 N -0.71 -5.90 5.10 -48.59 -0.25 -6.15 16 6 C 0.61 6.97 7.24 -12.39 -0.09 6.88 16 7 O -0.52 -7.35 13.13 5.31 0.07 -7.28 16 8 C 0.02 0.21 7.13 -82.86 -0.59 -0.38 16 9 N -0.25 -2.25 11.93 33.37 0.40 -1.85 16 10 N -0.35 -2.54 6.84 33.49 0.23 -2.31 16 11 H 0.45 1.47 8.96 -190.44 -1.71 -0.23 16 12 C -0.02 -0.20 8.21 -82.19 -0.67 -0.87 16 13 C -0.16 -1.99 6.92 -104.74 -0.72 -2.72 16 14 C 0.18 2.59 6.93 -5.16 -0.04 2.56 16 15 N -0.62 -8.98 3.35 -176.11 -0.59 -9.57 16 16 C 0.54 9.84 7.88 -10.98 -0.09 9.75 16 17 O -0.52 -11.78 16.37 5.55 0.09 -11.69 16 18 C -0.12 -2.15 4.91 -27.89 -0.14 -2.29 16 19 C 0.00 -0.01 3.33 -27.89 -0.09 -0.11 16 20 C -0.53 -14.71 9.66 -34.44 -0.33 -15.05 16 21 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 22 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 23 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 24 Si 0.88 22.43 27.47 -169.99 -4.67 17.77 16 25 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.26 -6.64 6.54 56.52 0.37 -6.27 16 28 C 0.19 1.91 6.58 -5.04 -0.03 1.88 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.87 6.16 -51.92 -0.32 0.55 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.28 8.14 -51.92 -0.42 -0.14 16 34 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.08 0.87 6.16 -51.93 -0.32 0.55 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.40 2.63 8.20 -40.82 -0.33 2.30 16 39 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 42 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 43 H 0.03 0.65 7.16 -51.93 -0.37 0.28 16 44 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 45 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 46 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 385.94 15.07 5.82 5.82 Total: -1.00 -36.32 385.94 -8.75 -45.07 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -8.53 Total: -3.19 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -2.09 Total: 0.26 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.56 Total: -46.75 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: 0.16 Total: -18.98 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.67 Total: 17.77 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.32 -8.75 -45.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271769669.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.436 kcal (2) G-P(sol) polarization free energy of solvation -36.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds